Wall clock time and date at job start Tue Mar 31 2020 05:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 119.99940 * 2 1 4 4 H 1.08999 * 110.67351 * 357.03464 * 3 2 1 5 5 O 1.44379 * 110.61327 * 234.06927 * 3 2 1 6 6 C 1.43750 * 106.97321 * 201.43549 * 5 3 2 7 7 C 1.54109 * 107.29094 * 26.51294 * 6 5 3 8 8 C 1.54808 * 104.18800 * 357.97349 * 7 6 5 9 9 H 1.08998 * 110.91361 * 97.35147 * 8 7 6 10 10 C 1.50700 * 110.90363 * 220.92005 * 8 7 6 11 11 O 1.21292 * 119.99960 * 118.54635 * 10 8 7 12 12 N 1.34777 * 120.00093 * 298.54160 * 10 8 7 13 13 C 1.46496 * 120.00089 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47105 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.47274 * 55.00346 * 15 14 13 17 17 C 1.53006 * 109.47020 * 175.00315 * 15 14 13 18 18 N 1.46504 * 109.47114 * 294.99855 * 15 14 13 19 19 C 1.36943 * 119.99781 * 155.00305 * 18 15 14 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 15 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 15 22 22 N 1.31622 * 119.99400 * 179.72313 * 21 19 18 23 23 Si 1.86800 * 120.00144 * 359.72086 * 21 19 18 24 24 H 1.48506 * 109.46719 * 90.00417 * 23 21 19 25 25 H 1.48501 * 109.46793 * 210.00071 * 23 21 19 26 26 H 1.48489 * 109.47333 * 330.00315 * 23 21 19 27 27 H 1.07998 * 119.99894 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99943 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.99475 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.87711 * 267.09413 * 6 5 3 31 31 H 1.08992 * 110.00244 * 146.00861 * 6 5 3 32 32 H 1.08998 * 110.48515 * 239.29273 * 7 6 5 33 33 H 1.09007 * 110.48062 * 116.64635 * 7 6 5 34 34 H 0.96998 * 119.99712 * 0.02562 * 12 10 8 35 35 H 1.09006 * 109.47072 * 60.00329 * 13 12 10 36 36 H 1.09003 * 109.47688 * 300.00350 * 13 12 10 37 37 H 1.08997 * 109.47025 * 60.00806 * 14 13 12 38 38 H 1.08998 * 109.47192 * 299.99944 * 14 13 12 39 39 H 1.08998 * 109.46686 * 299.99752 * 17 15 14 40 40 H 1.09001 * 109.47072 * 59.99907 * 17 15 14 41 41 H 1.08996 * 109.47059 * 179.97438 * 17 15 14 42 42 H 0.97000 * 120.00410 * 335.00630 * 18 15 14 43 43 H 0.97009 * 119.99492 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3740 2.1476 -0.0528 5 8 3.0045 1.3488 -1.0942 6 6 4.0002 2.3277 -0.7526 7 6 4.0581 2.4047 0.7855 8 6 2.9646 1.4152 1.2563 9 1 3.3984 0.4481 1.5105 10 6 2.1948 1.9796 2.4225 11 8 1.0023 2.1779 2.3230 12 7 2.8313 2.2639 3.5759 13 6 2.0831 2.8131 4.7093 14 6 3.0345 3.0429 5.8853 15 6 2.2529 3.6159 7.0692 16 1 1.4188 2.9559 7.3076 17 6 3.1769 3.7291 8.2835 18 7 1.7409 4.9433 6.7198 19 6 0.6318 5.4378 7.3529 20 1 0.1344 4.8490 8.1094 21 6 0.1433 6.6931 7.0178 22 7 -0.9259 7.1661 7.6224 23 14 1.0033 7.7112 5.7088 24 1 0.4192 7.4025 4.3787 25 1 0.8220 9.1548 6.0061 26 1 2.4520 7.3855 5.7008 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 3.7213 3.2986 -1.1620 31 1 4.9708 2.0249 -1.1454 32 1 3.8307 3.4149 1.1257 33 1 5.0376 2.0909 1.1465 34 1 3.7850 2.1056 3.6553 35 1 1.3038 2.1106 5.0049 36 1 1.6276 3.7601 4.4196 37 1 3.8140 3.7453 5.5901 38 1 3.4895 2.0957 6.1750 39 1 3.5578 2.7415 8.5434 40 1 4.0109 4.3891 8.0451 41 1 2.6202 4.1377 9.1268 42 1 2.1874 5.4720 6.0401 43 1 -1.2671 8.0435 7.3885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753014235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:03 Heat of formation + Delta-G solvation = -57.141423 kcal Electronic energy + Delta-G solvation = -22375.612026 eV Core-core repulsion = 19035.466978 eV Total energy + Delta-G solvation = -3340.145048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.59902 -38.70611 -36.77641 -34.61190 -33.95517 -32.76088 -32.10472 -29.84000 -28.91167 -28.17992 -24.40238 -23.36585 -22.62698 -22.11265 -20.54472 -20.21498 -19.77627 -17.81658 -17.41481 -16.55602 -16.00791 -15.95939 -15.46479 -15.06505 -14.68153 -14.11244 -13.93278 -13.81643 -13.67863 -13.48717 -12.98513 -12.71346 -12.53435 -12.23669 -12.14512 -11.94828 -11.76215 -11.33798 -11.24301 -11.13453 -11.05349 -10.81417 -10.67952 -10.42968 -10.09525 -10.03056 -9.78059 -9.58395 -9.52711 -9.00922 -8.91964 -7.27919 -5.76443 -3.12133 2.02645 2.58326 3.08930 3.36555 3.39971 3.45501 3.74050 4.16655 4.30246 4.48922 4.59366 4.75622 4.85319 4.93223 5.05416 5.11682 5.12329 5.16601 5.40127 5.41639 5.44925 5.55563 5.57865 5.59410 5.66129 5.77092 5.92367 6.03863 6.20086 6.23091 6.32845 6.42452 6.44877 6.50030 6.53119 6.67776 6.75440 6.95101 7.47787 7.99436 8.20326 8.42517 9.20599 9.93131 10.12096 11.42063 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.003837 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.458434 B = 7295.408533 C = 7607.066390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.159 4.159 3 C 0.126 3.874 4 H 0.088 0.912 5 O -0.370 6.370 6 C 0.048 3.952 7 C -0.149 4.149 8 C -0.138 4.138 9 H 0.112 0.888 10 C 0.519 3.481 11 O -0.528 6.528 12 N -0.728 5.728 13 C 0.120 3.880 14 C -0.136 4.136 15 C 0.179 3.821 16 H 0.058 0.942 17 C -0.164 4.164 18 N -0.748 5.748 19 C -0.243 4.243 20 H 0.091 0.909 21 C 0.006 3.994 22 N -0.934 5.934 23 Si 0.881 3.119 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.397 0.603 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.360 0.640 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.293 -14.318 -14.090 24.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.178 4.178 3 C 0.069 3.931 4 H 0.105 0.895 5 O -0.289 6.289 6 C -0.029 4.029 7 C -0.187 4.187 8 C -0.160 4.160 9 H 0.130 0.870 10 C 0.304 3.696 11 O -0.404 6.404 12 N -0.379 5.379 13 C -0.003 4.003 14 C -0.174 4.174 15 C 0.070 3.930 16 H 0.076 0.924 17 C -0.224 4.224 18 N -0.391 5.391 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.581 5.581 23 Si 0.712 3.288 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.205 1.205 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.230 0.770 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.193 0.807 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.182 -14.250 -14.193 23.514 hybrid contribution 1.153 0.965 -0.507 1.586 sum 13.335 -13.285 -14.701 23.883 Atomic orbital electron populations 1.23940 0.95749 1.02443 0.96774 1.22516 0.95728 0.96649 1.02858 1.21999 0.90449 0.97347 0.83324 0.89458 1.88923 1.38508 1.60262 1.41234 1.23130 0.92913 0.93032 0.93830 1.22981 0.99000 1.00204 0.96499 1.22896 0.96996 1.01058 0.95025 0.86987 1.20128 0.87855 0.78206 0.83433 1.90755 1.14872 1.52208 1.82562 1.46121 1.12371 1.65834 1.13580 1.21473 0.94456 0.99869 0.84484 1.22107 0.98472 1.01031 0.95829 1.20128 0.94287 0.87743 0.90880 0.92359 1.22396 1.00061 0.99413 1.00521 1.42825 1.33440 1.15808 1.47073 1.19066 1.01682 0.99974 1.16539 0.89156 1.24650 0.97498 0.97431 0.99379 1.69701 1.24383 1.19102 1.44953 0.86599 0.79221 0.80287 0.82704 1.21040 1.21761 1.20469 0.87920 0.87881 0.86932 0.91985 0.89432 0.89842 0.89418 0.77003 0.91308 0.90294 0.91762 0.91411 0.94221 0.93662 0.92215 0.80749 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 14.33 29.01 0.42 -1.23 16 2 C -0.16 -1.75 9.24 -36.03 -0.33 -2.08 16 3 C 0.13 1.47 2.73 -26.83 -0.07 1.39 16 4 H 0.09 1.17 7.24 -51.93 -0.38 0.80 16 5 O -0.37 -4.23 11.21 -35.23 -0.39 -4.63 16 6 C 0.05 0.40 7.70 37.74 0.29 0.69 16 7 C -0.15 -1.17 6.55 -25.20 -0.16 -1.34 16 8 C -0.14 -1.38 2.94 -89.76 -0.26 -1.64 16 9 H 0.11 0.92 8.05 -51.93 -0.42 0.50 16 10 C 0.52 6.93 7.05 -10.99 -0.08 6.86 16 11 O -0.53 -9.40 15.80 5.55 0.09 -9.31 16 12 N -0.73 -8.62 5.50 -60.29 -0.33 -8.95 16 13 C 0.12 1.81 5.56 -4.04 -0.02 1.78 16 14 C -0.14 -1.85 4.87 -26.73 -0.13 -1.98 16 15 C 0.18 3.22 2.89 -67.93 -0.20 3.02 16 16 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 17 C -0.16 -2.69 9.49 37.16 0.35 -2.34 16 18 N -0.75 -17.06 4.38 -53.42 -0.23 -17.29 16 19 C -0.24 -6.76 10.41 -15.06 -0.16 -6.91 16 20 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 22 N -0.93 -29.46 13.97 55.49 0.78 -28.68 16 23 Si 0.88 22.25 27.73 -169.99 -4.71 17.54 16 24 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 27 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 28 H 0.10 1.21 7.87 -52.49 -0.41 0.80 16 29 H 0.11 1.06 8.06 -52.49 -0.42 0.63 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 33 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.40 3.34 8.47 -40.82 -0.35 2.99 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.47 7.75 -51.93 -0.40 1.06 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16 43 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -33.86 355.33 -7.17 -41.03 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.26 Total: 8.63 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -0.45 Total: -3.69 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.21 Total: -54.93 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.31 Total: -13.94 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.86 -7.17 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753014235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.110 kcal (2) G-P(sol) polarization free energy of solvation -33.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds