Wall clock time and date at job start Tue Mar 31 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50703 * 119.99940 * 2 1 4 4 H 1.08999 * 110.67351 * 357.03464 * 3 2 1 5 5 O 1.44379 * 110.61327 * 234.06927 * 3 2 1 6 6 C 1.43750 * 106.97321 * 201.43549 * 5 3 2 7 7 C 1.54109 * 107.29094 * 26.51294 * 6 5 3 8 8 C 1.54808 * 104.18800 * 357.97349 * 7 6 5 9 9 H 1.08998 * 110.91361 * 97.35147 * 8 7 6 10 10 C 1.50700 * 110.90363 * 220.92005 * 8 7 6 11 11 O 1.21292 * 119.99960 * 118.54635 * 10 8 7 12 12 N 1.34777 * 120.00093 * 298.54160 * 10 8 7 13 13 C 1.46496 * 120.00089 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47105 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46946 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.47274 * 55.00346 * 15 14 13 17 17 C 1.53006 * 109.47020 * 175.00315 * 15 14 13 18 18 N 1.46504 * 109.47114 * 294.99855 * 15 14 13 19 19 C 1.36943 * 119.99781 * 155.00305 * 18 15 14 20 20 H 1.08002 * 119.99788 * 359.97438 * 19 18 15 21 21 C 1.38811 * 119.99622 * 180.27904 * 19 18 15 22 22 N 1.31622 * 119.99400 * 179.72313 * 21 19 18 23 23 Si 1.86800 * 120.00144 * 359.72086 * 21 19 18 24 24 H 1.48506 * 109.46719 * 90.00417 * 23 21 19 25 25 H 1.48501 * 109.46793 * 210.00071 * 23 21 19 26 26 H 1.48489 * 109.47333 * 330.00315 * 23 21 19 27 27 H 1.07998 * 119.99894 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99943 * 0.02562 * 1 2 3 29 29 H 1.07993 * 119.99475 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.87711 * 267.09413 * 6 5 3 31 31 H 1.08992 * 110.00244 * 146.00861 * 6 5 3 32 32 H 1.08998 * 110.48515 * 239.29273 * 7 6 5 33 33 H 1.09007 * 110.48062 * 116.64635 * 7 6 5 34 34 H 0.96998 * 119.99712 * 0.02562 * 12 10 8 35 35 H 1.09006 * 109.47072 * 60.00329 * 13 12 10 36 36 H 1.09003 * 109.47688 * 300.00350 * 13 12 10 37 37 H 1.08997 * 109.47025 * 60.00806 * 14 13 12 38 38 H 1.08998 * 109.47192 * 299.99944 * 14 13 12 39 39 H 1.08998 * 109.46686 * 299.99752 * 17 15 14 40 40 H 1.09001 * 109.47072 * 59.99907 * 17 15 14 41 41 H 1.08996 * 109.47059 * 179.97438 * 17 15 14 42 42 H 0.97000 * 120.00410 * 335.00630 * 18 15 14 43 43 H 0.97009 * 119.99492 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 1.3740 2.1476 -0.0528 5 8 3.0045 1.3488 -1.0942 6 6 4.0002 2.3277 -0.7526 7 6 4.0581 2.4047 0.7855 8 6 2.9646 1.4152 1.2563 9 1 3.3984 0.4481 1.5105 10 6 2.1948 1.9796 2.4225 11 8 1.0023 2.1779 2.3230 12 7 2.8313 2.2639 3.5759 13 6 2.0831 2.8131 4.7093 14 6 3.0345 3.0429 5.8853 15 6 2.2529 3.6159 7.0692 16 1 1.4188 2.9559 7.3076 17 6 3.1769 3.7291 8.2835 18 7 1.7409 4.9433 6.7198 19 6 0.6318 5.4378 7.3529 20 1 0.1344 4.8490 8.1094 21 6 0.1433 6.6931 7.0178 22 7 -0.9259 7.1661 7.6224 23 14 1.0033 7.7112 5.7088 24 1 0.4192 7.4025 4.3787 25 1 0.8220 9.1548 6.0061 26 1 2.4520 7.3855 5.7008 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 3.7213 3.2986 -1.1620 31 1 4.9708 2.0249 -1.1454 32 1 3.8307 3.4149 1.1257 33 1 5.0376 2.0909 1.1465 34 1 3.7850 2.1056 3.6553 35 1 1.3038 2.1106 5.0049 36 1 1.6276 3.7601 4.4196 37 1 3.8140 3.7453 5.5901 38 1 3.4895 2.0957 6.1750 39 1 3.5578 2.7415 8.5434 40 1 4.0109 4.3891 8.0451 41 1 2.6202 4.1377 9.1268 42 1 2.1874 5.4720 6.0401 43 1 -1.2671 8.0435 7.3885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753014235.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:02 Heat of formation + Delta-G solvation = -82.351726 kcal Electronic energy + Delta-G solvation = -22376.705227 eV Core-core repulsion = 19035.466978 eV Total energy + Delta-G solvation = -3341.238248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52607 -39.68385 -38.24830 -35.94232 -34.81052 -34.27625 -33.37030 -31.56853 -29.92619 -29.24965 -25.78849 -24.95002 -23.54985 -23.09086 -21.80444 -21.15931 -20.98446 -19.66940 -18.52175 -17.39741 -17.07746 -16.99612 -16.77025 -16.17019 -15.98144 -15.72730 -15.16315 -14.86491 -14.60054 -14.58432 -14.47344 -14.20174 -13.74964 -13.66591 -13.47661 -12.94607 -12.90238 -12.62609 -12.46708 -12.27085 -12.21038 -12.08487 -12.00830 -11.89302 -11.78934 -11.62818 -11.02156 -10.93597 -10.74173 -10.39618 -10.12510 -9.30207 -8.02385 -5.34017 1.19238 1.32692 1.38235 1.44045 1.55362 2.08295 2.47083 2.95857 3.30161 3.43120 3.50727 3.62418 3.75180 3.96589 4.02998 4.07149 4.17710 4.22482 4.25748 4.30440 4.39951 4.64511 4.71560 4.75547 4.80405 4.83420 4.86045 4.96379 5.00961 5.03637 5.07935 5.17336 5.36280 5.42532 5.57383 5.58703 5.72476 5.79831 5.87582 6.22493 6.53421 7.09708 7.23208 7.86938 8.04111 9.19779 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018231 B = 0.003837 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.458434 B = 7295.408533 C = 7607.066390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.164 4.164 3 C 0.121 3.879 4 H 0.056 0.944 5 O -0.384 6.384 6 C 0.040 3.960 7 C -0.141 4.141 8 C -0.127 4.127 9 H 0.141 0.859 10 C 0.515 3.485 11 O -0.581 6.581 12 N -0.709 5.709 13 C 0.127 3.873 14 C -0.118 4.118 15 C 0.167 3.833 16 H 0.041 0.959 17 C -0.155 4.155 18 N -0.751 5.751 19 C -0.222 4.222 20 H 0.056 0.944 21 C -0.066 4.066 22 N -0.987 5.987 23 Si 0.949 3.051 24 H -0.289 1.289 25 H -0.296 1.296 26 H -0.246 1.246 27 H 0.123 0.877 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.419 0.581 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.027 0.973 42 H 0.364 0.636 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.514 -15.938 -15.162 28.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C 0.063 3.937 4 H 0.074 0.926 5 O -0.304 6.304 6 C -0.037 4.037 7 C -0.179 4.179 8 C -0.149 4.149 9 H 0.159 0.841 10 C 0.302 3.698 11 O -0.461 6.461 12 N -0.362 5.362 13 C 0.003 3.997 14 C -0.156 4.156 15 C 0.059 3.941 16 H 0.059 0.941 17 C -0.214 4.214 18 N -0.395 5.395 19 C -0.354 4.354 20 H 0.074 0.926 21 C -0.257 4.257 22 N -0.638 5.638 23 Si 0.778 3.222 24 H -0.216 1.216 25 H -0.223 1.223 26 H -0.170 1.170 27 H 0.141 0.859 28 H 0.101 0.899 29 H 0.152 0.848 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.144 0.856 34 H 0.256 0.744 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.197 0.803 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.509 -15.923 -15.263 27.551 hybrid contribution -0.190 1.363 -0.144 1.384 sum 16.320 -14.559 -15.408 26.753 Atomic orbital electron populations 1.24047 0.96146 1.02525 0.97351 1.22744 0.95814 0.97231 1.02360 1.21917 0.90628 0.96627 0.84546 0.92587 1.88909 1.38996 1.61037 1.41453 1.23373 0.93321 0.92492 0.94486 1.23024 0.99884 0.99128 0.95872 1.22868 0.96750 1.02755 0.92499 0.84122 1.20782 0.87418 0.77289 0.84348 1.90745 1.17453 1.54407 1.83465 1.45862 1.13254 1.64787 1.12250 1.21168 0.94921 0.97587 0.86066 1.21954 0.97546 1.03178 0.92898 1.20444 0.94762 0.85168 0.93724 0.94098 1.22249 0.99328 1.01725 0.98135 1.42851 1.32212 1.17706 1.46718 1.19046 1.02303 0.99192 1.14827 0.92575 1.25450 0.98700 0.99165 1.02398 1.69886 1.26778 1.19602 1.47535 0.85485 0.79820 0.77887 0.79056 1.21597 1.22332 1.16985 0.85894 0.89884 0.84765 0.92402 0.86732 0.90788 0.85642 0.74367 0.93202 0.94298 0.89894 0.87248 0.90345 0.92692 0.95369 0.80321 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 14.33 67.77 0.97 -2.62 16 2 C -0.16 -3.45 9.24 25.64 0.24 -3.21 16 3 C 0.12 2.72 2.73 30.53 0.08 2.80 16 4 H 0.06 1.59 7.24 -2.39 -0.02 1.57 16 5 O -0.38 -8.17 11.21 -148.98 -1.67 -9.84 16 6 C 0.04 0.56 7.70 72.36 0.56 1.12 16 7 C -0.14 -1.72 6.55 31.59 0.21 -1.51 16 8 C -0.13 -2.22 2.94 -10.24 -0.03 -2.25 16 9 H 0.14 1.69 8.05 -2.39 -0.02 1.67 16 10 C 0.51 13.09 7.05 87.66 0.62 13.70 16 11 O -0.58 -21.21 15.80 -3.07 -0.05 -21.26 16 12 N -0.71 -14.87 5.50 -463.05 -2.55 -17.42 16 13 C 0.13 3.64 5.56 86.38 0.48 4.12 16 14 C -0.12 -2.77 4.87 30.59 0.15 -2.62 16 15 C 0.17 5.70 2.89 44.99 0.13 5.83 16 16 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 17 C -0.15 -4.65 9.49 71.98 0.68 -3.97 16 18 N -0.75 -33.76 4.38 -322.92 -1.41 -35.17 16 19 C -0.22 -12.68 10.41 84.03 0.87 -11.81 16 20 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 21 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 22 N -0.99 -64.67 13.97 21.65 0.30 -64.37 16 23 Si 0.95 46.51 27.73 68.60 1.90 48.41 16 24 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 26 H -0.25 -10.56 6.52 99.48 0.65 -9.91 16 27 H 0.12 2.09 8.06 -2.91 -0.02 2.07 16 28 H 0.08 2.12 7.87 -2.91 -0.02 2.09 16 29 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.07 7.85 -2.39 -0.02 1.05 16 33 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.42 5.06 8.47 -92.71 -0.79 4.27 16 35 H 0.05 1.61 8.14 -2.38 -0.02 1.60 16 36 H 0.04 1.44 7.75 -2.39 -0.02 1.42 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.36 15.75 5.66 -92.71 -0.53 15.23 16 43 H 0.26 16.03 8.31 -92.70 -0.77 15.26 16 Total: -1.00 -79.03 355.33 1.57 -77.46 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -0.38 Total: 26.09 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.43 Total: -3.91 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -3.66 Total: -116.96 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.72 Total: -31.09 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.90 Total: 48.41 kcal Total: -79.03 1.57 -77.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753014235.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.896 kcal (2) G-P(sol) polarization free energy of solvation -79.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds