Wall clock time and date at job start Tue Mar 31 2020 05:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47092 * 2 1 4 4 C 1.52996 * 109.46970 * 240.00624 * 2 1 3 5 5 C 1.53006 * 109.47455 * 175.00106 * 4 2 1 6 6 N 1.46496 * 109.47470 * 179.97438 * 5 4 2 7 7 C 1.34773 * 120.00202 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99662 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00176 * 179.97438 * 7 6 5 10 10 H 1.09000 * 110.66348 * 56.78851 * 9 7 6 11 11 C 1.55000 * 110.74711 * 293.37075 * 9 7 6 12 12 C 1.55829 * 102.78522 * 241.67356 * 11 9 7 13 13 H 1.09003 * 115.92954 * 158.43747 * 12 11 9 14 14 C 1.55814 * 105.32763 * 287.31185 * 12 11 9 15 15 C 1.55000 * 102.78981 * 72.69149 * 14 12 11 16 16 C 1.55819 * 110.74718 * 180.02562 * 9 7 6 17 17 H 1.09006 * 115.38816 * 319.48545 * 16 9 7 18 18 O 1.46529 * 101.24536 * 32.42151 * 12 11 9 19 19 N 1.46498 * 109.47444 * 120.00478 * 2 1 3 20 20 C 1.36943 * 119.99727 * 275.00028 * 19 2 1 21 21 H 1.07998 * 120.00392 * 359.97438 * 20 19 2 22 22 C 1.38811 * 119.99586 * 179.97438 * 20 19 2 23 23 N 1.31618 * 120.00460 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99694 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 60.00129 * 24 22 20 27 27 H 1.48500 * 109.47454 * 300.00122 * 24 22 20 28 28 H 1.08999 * 109.46730 * 299.99738 * 1 2 3 29 29 H 1.08995 * 109.47045 * 59.99688 * 1 2 3 30 30 H 1.08996 * 109.47005 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47063 * 294.99505 * 4 2 1 32 32 H 1.09002 * 109.47699 * 54.99624 * 4 2 1 33 33 H 1.09005 * 109.46494 * 299.99747 * 5 4 2 34 34 H 1.09002 * 109.47061 * 59.99127 * 5 4 2 35 35 H 0.96999 * 119.99943 * 359.97438 * 6 5 4 36 36 H 1.08999 * 110.75471 * 359.97438 * 11 9 7 37 37 H 1.08997 * 110.74767 * 123.35269 * 11 9 7 38 38 H 1.09005 * 110.75368 * 314.36796 * 14 12 11 39 39 H 1.09001 * 110.75025 * 191.01571 * 14 12 11 40 40 H 1.09002 * 110.75233 * 241.67933 * 15 14 12 41 41 H 1.08997 * 110.90770 * 118.39516 * 15 14 12 42 42 H 0.96998 * 120.00095 * 94.99488 * 19 2 1 43 43 H 0.97001 * 119.99952 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0532 -1.3042 -2.5097 7 6 5.3740 -1.3397 -2.7754 8 8 6.1584 -0.7999 -2.0241 9 6 5.8764 -2.0510 -4.0053 10 1 5.4095 -1.6445 -4.9025 11 6 5.6294 -3.5773 -3.8963 12 6 7.0721 -4.1643 -3.9434 13 1 7.1937 -5.1642 -3.5267 14 6 7.5377 -3.9949 -5.4206 15 6 7.7847 -2.4686 -5.5297 16 6 7.4290 -1.9592 -4.1006 17 1 7.8577 -0.9947 -3.8282 18 8 7.8342 -3.1030 -3.2801 19 7 2.0184 -0.6907 1.1961 20 6 2.1492 -0.0076 2.3757 21 1 1.8927 1.0404 2.4242 22 6 2.6115 -0.6622 3.5092 23 7 2.9246 -1.9392 3.4500 24 14 2.7906 0.2698 5.1181 25 1 3.2984 -0.6490 6.1685 26 1 1.4686 0.8076 5.5285 27 1 3.7466 1.3916 4.9367 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.7516 -1.7714 -1.2057 32 1 1.6053 -0.2616 -2.1370 33 1 3.8532 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4261 35 1 3.4259 -1.7362 -3.1104 36 1 5.1434 -3.8234 -2.9522 37 1 5.0396 -3.9343 -4.7405 38 1 6.7549 -4.3097 -6.1108 39 1 8.4589 -4.5490 -5.6012 40 1 7.1249 -2.0228 -6.2741 41 1 8.8280 -2.2593 -5.7658 42 1 2.2491 -1.6318 1.1525 43 1 2.8319 -2.4231 2.6144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753014482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:58 Heat of formation + Delta-G solvation = -69.077347 kcal Electronic energy + Delta-G solvation = -22539.106409 eV Core-core repulsion = 19198.443781 eV Total energy + Delta-G solvation = -3340.662628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.26553 -38.94654 -36.67029 -34.46241 -32.74968 -32.33456 -31.24018 -29.91594 -28.94385 -27.92707 -24.18335 -23.36476 -22.41645 -21.69386 -20.82524 -20.28055 -19.56256 -17.57435 -17.35086 -16.75291 -16.07161 -15.40382 -15.30920 -14.93926 -14.57401 -14.23736 -14.17216 -13.55709 -13.38049 -13.04060 -12.83092 -12.61464 -12.20874 -12.09712 -11.90645 -11.76916 -11.53595 -11.36551 -11.26610 -11.03832 -10.90961 -10.74955 -10.65816 -10.53531 -10.20990 -10.12245 -9.92012 -9.55995 -9.10946 -8.91228 -8.81597 -6.99565 -6.04489 -3.04555 2.75368 3.21407 3.55919 3.60251 3.64024 3.77182 4.20185 4.28798 4.43693 4.57470 4.72255 4.79240 4.81691 4.89132 4.97009 5.14052 5.19839 5.26652 5.30210 5.49307 5.52073 5.55124 5.67499 5.70531 5.72764 5.76453 5.80126 5.85558 5.99758 6.10251 6.27756 6.32202 6.36868 6.41443 6.57911 6.66067 6.80428 6.99500 7.62756 7.85997 8.37672 8.80860 9.27351 10.13771 10.28161 11.43763 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.003511 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.809677 B = 7972.914973 C = 8644.163884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.180 3.820 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.123 3.877 6 N -0.730 5.730 7 C 0.517 3.483 8 O -0.528 6.528 9 C -0.141 4.141 10 H 0.106 0.894 11 C -0.138 4.138 12 C 0.059 3.941 13 H 0.131 0.869 14 C -0.149 4.149 15 C -0.150 4.150 16 C 0.089 3.911 17 H 0.137 0.863 18 O -0.361 6.361 19 N -0.735 5.735 20 C -0.330 4.330 21 H 0.064 0.936 22 C -0.044 4.044 23 N -0.943 5.943 24 Si 1.079 2.921 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.295 1.295 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.395 0.605 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.366 0.634 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.820 -3.210 -22.908 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.069 3.931 3 H 0.068 0.932 4 C -0.172 4.172 5 C 0.000 4.000 6 N -0.381 5.381 7 C 0.302 3.698 8 O -0.403 6.403 9 C -0.163 4.163 10 H 0.124 0.876 11 C -0.176 4.176 12 C 0.001 3.999 13 H 0.149 0.851 14 C -0.186 4.186 15 C -0.188 4.188 16 C 0.030 3.970 17 H 0.154 0.846 18 O -0.279 6.279 19 N -0.378 5.378 20 C -0.461 4.461 21 H 0.082 0.918 22 C -0.242 4.242 23 N -0.589 5.589 24 Si 0.910 3.090 25 H -0.211 1.211 26 H -0.224 1.224 27 H -0.222 1.222 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.228 0.772 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.199 0.801 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.962 -2.710 -20.499 21.264 hybrid contribution -1.078 -0.302 -2.123 2.400 sum 3.884 -3.012 -22.621 23.149 Atomic orbital electron populations 1.22409 0.99073 1.00730 1.00078 1.20085 0.91850 0.95563 0.85572 0.93204 1.22076 0.94026 1.01617 0.99439 1.21417 0.94233 0.97203 0.87145 1.46105 1.07188 1.57255 1.27577 1.20287 0.82393 0.80301 0.86832 1.90750 1.55181 1.45225 1.49183 1.23094 0.98715 0.96843 0.97621 0.87583 1.23260 0.98167 0.92648 1.03573 1.24715 0.89868 0.93593 0.91739 0.85090 1.23268 1.02044 0.96473 0.96842 1.23285 1.02618 0.95762 0.97116 1.24472 0.90808 0.92507 0.89176 0.84579 1.90176 1.66963 1.17338 1.53464 1.42458 1.79249 1.09759 1.06345 1.20014 1.41950 0.95045 0.89114 0.91818 1.25734 0.99364 0.97493 1.01611 1.70884 1.51272 1.08343 1.28359 0.83263 0.75791 0.74353 0.75638 1.21073 1.22377 1.22242 0.92641 0.94459 0.93678 0.91812 0.91813 0.91818 0.90176 0.77209 0.90029 0.89667 0.90525 0.90733 0.90514 0.90436 0.80070 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.49 37.16 0.35 -2.54 16 2 C 0.18 3.52 2.89 -67.93 -0.20 3.32 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 5 C 0.12 2.09 5.56 -4.04 -0.02 2.07 16 6 N -0.73 -9.86 5.56 -60.29 -0.33 -10.20 16 7 C 0.52 7.78 6.98 -10.99 -0.08 7.70 16 8 O -0.53 -10.68 15.92 5.55 0.09 -10.59 16 9 C -0.14 -1.48 2.89 -89.21 -0.26 -1.74 16 10 H 0.11 0.79 7.81 -51.93 -0.41 0.39 16 11 C -0.14 -1.26 6.16 -24.17 -0.15 -1.41 16 12 C 0.06 0.57 5.71 -23.72 -0.14 0.43 16 13 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.15 -1.08 6.52 -24.17 -0.16 -1.23 16 15 C -0.15 -1.17 6.53 -24.16 -0.16 -1.33 16 16 C 0.09 1.01 4.58 -23.71 -0.11 0.90 16 17 H 0.14 1.66 7.80 -51.93 -0.41 1.26 16 18 O -0.36 -5.10 11.64 -35.23 -0.41 -5.51 16 19 N -0.73 -18.31 4.57 -53.43 -0.24 -18.56 16 20 C -0.33 -9.39 9.93 -15.06 -0.15 -9.54 16 21 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.04 -1.32 5.50 -17.43 -0.10 -1.41 16 23 N -0.94 -29.79 13.70 55.49 0.76 -29.03 16 24 Si 1.08 26.67 29.92 -169.99 -5.09 21.58 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.71 7.75 -51.93 -0.40 1.31 16 35 H 0.39 3.92 8.47 -40.82 -0.35 3.57 16 36 H 0.08 0.88 7.76 -51.93 -0.40 0.47 16 37 H 0.08 0.52 7.80 -51.93 -0.41 0.12 16 38 H 0.08 0.42 7.80 -51.93 -0.41 0.01 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.46 7.81 -51.93 -0.41 0.06 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.37 9.47 6.63 -40.82 -0.27 9.20 16 43 H 0.25 7.90 6.77 -40.82 -0.28 7.63 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -35.86 345.84 -8.46 -44.32 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.16 Total: 9.73 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -1.28 Total: -6.95 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.18 Total: -57.79 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.32 Total: -16.10 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -5.09 Total: 21.58 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.86 -8.46 -44.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753014482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.761 kcal (2) G-P(sol) polarization free energy of solvation -35.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds