Wall clock time and date at job start Tue Mar 31 2020 05:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47092 * 2 1 4 4 C 1.52996 * 109.46970 * 240.00624 * 2 1 3 5 5 C 1.53006 * 109.47455 * 175.00106 * 4 2 1 6 6 N 1.46496 * 109.47470 * 179.97438 * 5 4 2 7 7 C 1.34773 * 120.00202 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99662 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00176 * 179.97438 * 7 6 5 10 10 H 1.09000 * 110.66348 * 56.78851 * 9 7 6 11 11 C 1.55000 * 110.74711 * 293.37075 * 9 7 6 12 12 C 1.55829 * 102.78522 * 241.67356 * 11 9 7 13 13 H 1.09003 * 115.92954 * 158.43747 * 12 11 9 14 14 C 1.55814 * 105.32763 * 287.31185 * 12 11 9 15 15 C 1.55000 * 102.78981 * 72.69149 * 14 12 11 16 16 C 1.55819 * 110.74718 * 180.02562 * 9 7 6 17 17 H 1.09006 * 115.38816 * 319.48545 * 16 9 7 18 18 O 1.46529 * 101.24536 * 32.42151 * 12 11 9 19 19 N 1.46498 * 109.47444 * 120.00478 * 2 1 3 20 20 C 1.36943 * 119.99727 * 275.00028 * 19 2 1 21 21 H 1.07998 * 120.00392 * 359.97438 * 20 19 2 22 22 C 1.38811 * 119.99586 * 179.97438 * 20 19 2 23 23 N 1.31618 * 120.00460 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99694 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47297 * 179.97438 * 24 22 20 26 26 H 1.48503 * 109.47261 * 60.00129 * 24 22 20 27 27 H 1.48500 * 109.47454 * 300.00122 * 24 22 20 28 28 H 1.08999 * 109.46730 * 299.99738 * 1 2 3 29 29 H 1.08995 * 109.47045 * 59.99688 * 1 2 3 30 30 H 1.08996 * 109.47005 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47063 * 294.99505 * 4 2 1 32 32 H 1.09002 * 109.47699 * 54.99624 * 4 2 1 33 33 H 1.09005 * 109.46494 * 299.99747 * 5 4 2 34 34 H 1.09002 * 109.47061 * 59.99127 * 5 4 2 35 35 H 0.96999 * 119.99943 * 359.97438 * 6 5 4 36 36 H 1.08999 * 110.75471 * 359.97438 * 11 9 7 37 37 H 1.08997 * 110.74767 * 123.35269 * 11 9 7 38 38 H 1.09005 * 110.75368 * 314.36796 * 14 12 11 39 39 H 1.09001 * 110.75025 * 191.01571 * 14 12 11 40 40 H 1.09002 * 110.75233 * 241.67933 * 15 14 12 41 41 H 1.08997 * 110.90770 * 118.39516 * 15 14 12 42 42 H 0.96998 * 120.00095 * 94.99488 * 19 2 1 43 43 H 0.97001 * 119.99952 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0532 -1.3042 -2.5097 7 6 5.3740 -1.3397 -2.7754 8 8 6.1584 -0.7999 -2.0241 9 6 5.8764 -2.0510 -4.0053 10 1 5.4095 -1.6445 -4.9025 11 6 5.6294 -3.5773 -3.8963 12 6 7.0721 -4.1643 -3.9434 13 1 7.1937 -5.1642 -3.5267 14 6 7.5377 -3.9949 -5.4206 15 6 7.7847 -2.4686 -5.5297 16 6 7.4290 -1.9592 -4.1006 17 1 7.8577 -0.9947 -3.8282 18 8 7.8342 -3.1030 -3.2801 19 7 2.0184 -0.6907 1.1961 20 6 2.1492 -0.0076 2.3757 21 1 1.8927 1.0404 2.4242 22 6 2.6115 -0.6622 3.5092 23 7 2.9246 -1.9392 3.4500 24 14 2.7906 0.2698 5.1181 25 1 3.2984 -0.6490 6.1685 26 1 1.4686 0.8076 5.5285 27 1 3.7466 1.3916 4.9367 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.7516 -1.7714 -1.2057 32 1 1.6053 -0.2616 -2.1370 33 1 3.8532 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4261 35 1 3.4259 -1.7362 -3.1104 36 1 5.1434 -3.8234 -2.9522 37 1 5.0396 -3.9343 -4.7405 38 1 6.7549 -4.3097 -6.1108 39 1 8.4589 -4.5490 -5.6012 40 1 7.1249 -2.0228 -6.2741 41 1 8.8280 -2.2593 -5.7658 42 1 2.2491 -1.6318 1.1525 43 1 2.8319 -2.4231 2.6144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753014482.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:58 Heat of formation + Delta-G solvation = -96.336265 kcal Electronic energy + Delta-G solvation = -22540.288444 eV Core-core repulsion = 19198.443781 eV Total energy + Delta-G solvation = -3341.844664 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.12894 -40.13813 -38.30163 -36.02089 -34.41132 -33.43914 -32.08412 -30.69544 -30.58761 -29.44982 -25.84115 -24.93272 -23.50797 -22.56290 -21.94509 -21.41876 -20.72789 -19.51573 -18.50245 -17.68660 -17.14413 -16.72956 -16.63310 -16.16518 -16.02746 -15.64617 -15.43908 -15.15425 -14.51017 -14.40526 -14.20646 -13.76266 -13.58039 -13.21113 -12.82735 -12.69157 -12.58120 -12.54599 -12.47782 -12.33020 -12.25990 -12.06634 -11.90624 -11.90223 -11.77002 -11.49255 -11.23621 -10.97908 -10.95041 -10.72480 -10.17414 -9.11006 -8.38511 -5.31099 1.54954 1.57451 1.65630 1.81292 2.10572 2.70648 2.86931 3.38590 3.40951 3.53004 3.70117 3.72266 3.88817 3.91212 3.95673 4.10034 4.11074 4.23268 4.26041 4.37060 4.47499 4.54600 4.59701 4.65934 4.77415 4.84309 4.91169 4.95536 4.99414 5.00096 5.08158 5.09502 5.15200 5.23891 5.28930 5.39019 5.50101 5.61729 5.65556 6.49898 6.52991 7.11359 7.24559 8.02106 8.12293 9.13567 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.003511 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.809677 B = 7972.914973 C = 8644.163884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.168 3.832 3 H 0.038 0.962 4 C -0.114 4.114 5 C 0.134 3.866 6 N -0.712 5.712 7 C 0.508 3.492 8 O -0.592 6.592 9 C -0.130 4.130 10 H 0.151 0.849 11 C -0.132 4.132 12 C 0.045 3.955 13 H 0.137 0.863 14 C -0.138 4.138 15 C -0.139 4.139 16 C 0.071 3.929 17 H 0.112 0.888 18 O -0.413 6.413 19 N -0.748 5.748 20 C -0.325 4.325 21 H 0.065 0.935 22 C -0.108 4.108 23 N -0.978 5.978 24 Si 1.124 2.876 25 H -0.294 1.294 26 H -0.274 1.274 27 H -0.282 1.282 28 H 0.030 0.970 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.026 0.974 35 H 0.418 0.582 36 H 0.058 0.942 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.357 0.643 43 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 -3.288 -26.321 26.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 H 0.056 0.944 4 C -0.153 4.153 5 C 0.009 3.991 6 N -0.364 5.364 7 C 0.296 3.704 8 O -0.471 6.471 9 C -0.151 4.151 10 H 0.168 0.832 11 C -0.170 4.170 12 C -0.012 4.012 13 H 0.154 0.846 14 C -0.176 4.176 15 C -0.177 4.177 16 C 0.013 3.987 17 H 0.129 0.871 18 O -0.333 6.333 19 N -0.391 5.391 20 C -0.457 4.457 21 H 0.083 0.917 22 C -0.299 4.299 23 N -0.626 5.626 24 Si 0.949 3.051 25 H -0.220 1.220 26 H -0.200 1.200 27 H -0.209 1.209 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.148 0.852 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.189 0.811 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.222 -2.779 -23.999 24.374 hybrid contribution -0.545 -0.235 -1.110 1.259 sum 2.677 -3.014 -25.110 25.431 Atomic orbital electron populations 1.22239 0.96862 1.01077 1.00966 1.20410 0.93279 0.94978 0.85381 0.94365 1.21920 0.92306 1.02054 0.98976 1.21037 0.95393 0.95989 0.86659 1.45879 1.07451 1.56525 1.26570 1.21299 0.82096 0.79363 0.87675 1.90723 1.56765 1.48002 1.51657 1.23166 0.98091 0.97444 0.96367 0.83182 1.23315 0.98194 0.91215 1.04263 1.25042 0.89873 0.92961 0.93343 0.84557 1.23260 1.03144 0.95880 0.95268 1.23263 1.03339 0.96177 0.94887 1.24592 0.91462 0.91326 0.91302 0.87061 1.90133 1.68325 1.19352 1.55453 1.42673 1.79670 1.09508 1.07219 1.20358 1.39751 0.95189 0.90368 0.91745 1.27114 0.99909 0.97655 1.05234 1.70993 1.54129 1.09597 1.27889 0.82674 0.76928 0.73473 0.71998 1.22021 1.20015 1.20892 0.95065 0.90230 0.93567 0.90914 0.87214 0.93392 0.95595 0.74499 0.92344 0.85175 0.87376 0.90556 0.87596 0.90522 0.81059 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 9.49 71.98 0.68 -4.38 16 2 C 0.17 6.44 2.89 44.99 0.13 6.57 16 3 H 0.04 1.55 8.08 -2.38 -0.02 1.54 16 4 C -0.11 -3.29 4.87 30.60 0.15 -3.14 16 5 C 0.13 4.61 5.56 86.38 0.48 5.09 16 6 N -0.71 -18.53 5.56 -463.05 -2.57 -21.10 16 7 C 0.51 15.37 6.98 87.66 0.61 15.98 16 8 O -0.59 -25.47 15.92 -3.05 -0.05 -25.52 16 9 C -0.13 -2.45 2.89 -9.88 -0.03 -2.48 16 10 H 0.15 1.51 7.81 -2.39 -0.02 1.50 16 11 C -0.13 -2.05 6.16 32.26 0.20 -1.85 16 12 C 0.04 0.80 5.71 32.55 0.19 0.99 16 13 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.14 -1.52 6.52 32.25 0.21 -1.31 16 15 C -0.14 -1.78 6.53 32.26 0.21 -1.57 16 16 C 0.07 1.61 4.58 32.55 0.15 1.75 16 17 H 0.11 2.94 7.80 -2.38 -0.02 2.92 16 18 O -0.41 -12.03 11.64 -148.98 -1.73 -13.77 16 19 N -0.75 -38.12 4.57 -322.94 -1.48 -39.59 16 20 C -0.32 -18.84 9.93 84.03 0.83 -18.01 16 21 H 0.06 3.65 7.83 -2.91 -0.02 3.63 16 22 C -0.11 -6.55 5.50 84.86 0.47 -6.08 16 23 N -0.98 -63.85 13.70 21.65 0.30 -63.55 16 24 Si 1.12 54.57 29.92 68.60 2.05 56.63 16 25 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 27 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 28 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.03 1.17 7.75 -2.39 -0.02 1.16 16 35 H 0.42 6.98 8.47 -92.71 -0.79 6.19 16 36 H 0.06 1.19 7.76 -2.39 -0.02 1.17 16 37 H 0.13 0.86 7.80 -2.39 -0.02 0.85 16 38 H 0.11 0.55 7.80 -2.38 -0.02 0.54 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 40 H 0.11 0.75 7.81 -2.39 -0.02 0.73 16 41 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.36 19.21 6.63 -92.71 -0.61 18.60 16 43 H 0.24 15.76 6.77 -92.71 -0.63 15.14 16 Total: -1.00 -85.09 345.84 0.54 -84.55 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.25 Total: 30.79 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 4.28 Total: -8.44 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -3.75 Total: -124.24 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.78 Total: -39.29 kcal Atomic # 14 Polarization: 54.57 SS G_CDS: 2.05 Total: 56.63 kcal Total: -85.09 0.54 -84.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753014482.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.785 kcal (2) G-P(sol) polarization free energy of solvation -85.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds