Wall clock time and date at job start Tue Mar 31 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47191 * 2 1 4 4 C 1.52992 * 109.47229 * 239.99637 * 2 1 3 5 5 N 1.46507 * 109.47094 * 184.99745 * 4 2 1 6 6 C 1.36939 * 119.99847 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00176 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99830 * 180.02562 * 6 5 4 9 9 N 1.31624 * 119.99908 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99852 * 359.97438 * 8 6 5 11 11 H 1.48504 * 109.47045 * 90.00436 * 10 8 6 12 12 H 1.48501 * 109.46920 * 210.00396 * 10 8 6 13 13 H 1.48502 * 109.47348 * 329.99967 * 10 8 6 14 14 N 1.46506 * 109.47078 * 119.99433 * 2 1 3 15 15 C 1.34777 * 119.99886 * 274.99962 * 14 2 1 16 16 O 1.21278 * 120.00253 * 0.02562 * 15 14 2 17 17 C 1.50703 * 119.99658 * 180.02562 * 15 14 2 18 18 H 1.08997 * 110.53189 * 302.17819 * 17 15 14 19 19 O 1.44410 * 110.72832 * 179.26349 * 17 15 14 20 20 C 1.43855 * 106.48418 * 199.96272 * 19 17 15 21 21 C 1.54012 * 107.04740 * 29.95164 * 20 19 17 22 22 H 1.09002 * 112.58494 * 232.30509 * 21 20 19 23 23 C 1.53738 * 109.30834 * 107.42042 * 21 20 19 24 24 C 1.54337 * 106.49112 * 243.94073 * 23 21 20 25 25 C 1.54906 * 103.77667 * 26.94803 * 24 23 21 26 26 C 1.54736 * 102.86831 * 320.49208 * 25 24 23 27 27 H 1.09009 * 113.35236 * 272.03244 * 26 25 24 28 28 H 1.08998 * 109.46799 * 300.00073 * 1 2 3 29 29 H 1.08997 * 109.47016 * 60.00660 * 1 2 3 30 30 H 1.09002 * 109.46888 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47108 * 304.99760 * 4 2 1 32 32 H 1.09001 * 109.47150 * 65.00255 * 4 2 1 33 33 H 0.96997 * 120.00001 * 0.02562 * 5 4 2 34 34 H 0.96993 * 119.99445 * 179.97438 * 9 8 6 35 35 H 0.96996 * 119.99588 * 95.00740 * 14 2 1 36 36 H 1.09000 * 109.92691 * 149.30359 * 20 19 17 37 37 H 1.09002 * 109.92040 * 270.60647 * 20 19 17 38 38 H 1.08994 * 110.04862 * 124.68243 * 23 21 20 39 39 H 1.08997 * 110.05344 * 3.20150 * 23 21 20 40 40 H 1.08999 * 110.56294 * 145.51980 * 24 23 21 41 41 H 1.08998 * 110.56228 * 268.36903 * 24 23 21 42 42 H 1.09000 * 110.73682 * 78.84180 * 25 24 23 43 43 H 1.09003 * 110.72749 * 201.96435 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8263 -1.1904 6 6 4.1839 -1.4389 -2.2066 7 1 3.6469 -1.8441 -3.0514 8 6 5.5673 -1.5389 -2.1507 9 7 6.2246 -2.1272 -3.1276 10 14 6.4962 -0.8373 -0.6898 11 1 6.6269 -1.8791 0.3604 12 1 7.8472 -0.4012 -1.1254 13 1 5.7529 0.3263 -0.1430 14 7 2.0184 -0.6905 1.1963 15 6 2.1471 -0.0180 2.3572 16 8 1.8582 1.1586 2.4117 17 6 2.6500 -0.7282 3.5876 18 1 2.0110 -1.5784 3.8262 19 8 2.7256 0.1806 4.7073 20 6 3.6266 -0.4159 5.6570 21 6 4.6411 -1.2511 4.8538 22 1 4.7174 -2.2770 5.2143 23 6 6.0043 -0.5403 4.8618 24 6 6.3089 -0.1605 3.3972 25 6 4.9070 -0.0196 2.7535 26 6 4.1162 -1.1869 3.3910 27 1 4.2073 -2.1227 2.8394 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -1.7199 -1.2949 32 1 1.7517 -0.1584 -2.1369 33 1 3.9824 -0.4627 -0.4315 34 1 7.1912 -2.1967 -3.0887 35 1 2.2491 -1.6316 1.1527 36 1 4.1461 0.3626 6.2157 37 1 3.0731 -1.0603 6.3399 38 1 6.7739 -1.2123 5.2414 39 1 5.9541 0.3573 5.4780 40 1 6.8481 0.7857 3.3513 41 1 6.8777 -0.9506 2.9072 42 1 4.4574 0.9387 3.0135 43 1 4.9660 -0.1354 1.6712 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754235321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:17 Heat of formation + Delta-G solvation = -98.576121 kcal Electronic energy + Delta-G solvation = -23969.605483 eV Core-core repulsion = 20627.663692 eV Total energy + Delta-G solvation = -3341.941791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.99056 -40.17484 -37.80653 -36.70563 -35.52925 -33.50793 -32.55106 -31.14046 -30.46664 -27.66602 -27.44997 -24.82552 -24.02909 -22.55279 -22.06253 -21.14373 -20.81391 -19.79085 -18.21158 -17.99895 -17.31315 -16.71575 -16.57721 -16.12404 -15.93919 -15.64516 -15.39975 -15.20622 -14.97531 -14.55937 -14.21556 -13.90488 -13.77193 -13.69275 -13.22770 -12.88519 -12.78739 -12.63277 -12.48635 -12.37608 -12.22539 -12.11632 -11.93143 -11.84744 -11.81149 -11.65161 -11.52658 -11.05062 -10.87200 -10.51417 -10.13679 -9.33565 -8.05036 -5.38398 1.31216 1.35564 1.41215 1.52693 1.88667 2.43260 3.00034 3.16072 3.26400 3.38031 3.54269 3.67970 3.83704 3.93413 4.03405 4.08809 4.21728 4.24338 4.32046 4.40257 4.42420 4.50929 4.57406 4.60357 4.77864 4.81972 4.83967 4.86850 4.92075 4.93499 5.04571 5.08507 5.14290 5.20505 5.28568 5.35309 5.49815 5.74596 5.77305 6.18147 6.51112 7.04496 7.18619 7.80144 7.98595 9.15729 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.007743 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.230964 B = 3615.444102 C = 5250.710276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.138 3.862 3 H 0.062 0.938 4 C 0.148 3.852 5 N -0.757 5.757 6 C -0.229 4.229 7 H 0.064 0.936 8 C -0.059 4.059 9 N -0.980 5.980 10 Si 0.941 3.059 11 H -0.260 1.260 12 H -0.304 1.304 13 H -0.264 1.264 14 N -0.707 5.707 15 C 0.520 3.480 16 O -0.572 6.572 17 C 0.065 3.935 18 H 0.126 0.874 19 O -0.376 6.376 20 C 0.046 3.954 21 C -0.114 4.114 22 H 0.124 0.876 23 C -0.111 4.111 24 C -0.131 4.131 25 C -0.136 4.136 26 C -0.113 4.113 27 H 0.120 0.880 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.364 0.636 34 H 0.257 0.743 35 H 0.412 0.588 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.469 -0.868 19.730 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.034 3.966 3 H 0.080 0.920 4 C 0.021 3.979 5 N -0.403 5.403 6 C -0.360 4.360 7 H 0.082 0.918 8 C -0.250 4.250 9 N -0.630 5.630 10 Si 0.770 3.230 11 H -0.185 1.185 12 H -0.231 1.231 13 H -0.190 1.190 14 N -0.360 5.360 15 C 0.307 3.693 16 O -0.450 6.450 17 C 0.004 3.996 18 H 0.143 0.857 19 O -0.295 6.295 20 C -0.030 4.030 21 C -0.132 4.132 22 H 0.142 0.858 23 C -0.148 4.148 24 C -0.169 4.169 25 C -0.173 4.173 26 C -0.132 4.132 27 H 0.138 0.862 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.197 0.803 34 H 0.066 0.934 35 H 0.249 0.751 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.789 0.079 19.601 20.743 hybrid contribution 1.187 0.092 -0.040 1.192 sum -5.602 0.171 19.561 20.348 Atomic orbital electron populations 1.22005 0.92473 1.03429 1.02668 1.21150 0.95695 0.96219 0.83573 0.92012 1.21140 0.82849 0.98775 0.95095 1.42721 1.03182 1.70733 1.23658 1.19047 0.90007 1.27698 0.99224 0.91753 1.25392 0.97291 1.01838 1.00507 1.69864 1.07407 1.50853 1.34925 0.85700 0.77632 0.79297 0.80377 1.18504 1.23120 1.18996 1.45911 1.66616 1.14749 1.08705 1.20588 0.76779 0.86901 0.85049 1.90674 1.51255 1.17587 1.85522 1.23034 0.98126 0.92571 0.85835 0.85682 1.89039 1.66330 1.44746 1.29368 1.23666 0.90574 0.97521 0.91285 1.23126 0.95526 1.01653 0.92918 0.85776 1.22269 0.96450 1.00751 0.95312 1.22462 0.95832 1.01541 0.97038 1.22676 0.97110 0.98402 0.99141 1.23608 0.92013 0.99411 0.98181 0.86203 0.93023 0.90138 0.90457 0.93148 0.93860 0.80253 0.93410 0.75127 0.88624 0.89815 0.89478 0.90666 0.91616 0.91892 0.92430 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.48 71.98 0.68 -2.86 16 2 C 0.14 4.23 2.73 44.99 0.12 4.35 16 3 H 0.06 2.23 7.58 -2.38 -0.02 2.21 16 4 C 0.15 5.19 5.82 86.38 0.50 5.69 16 5 N -0.76 -33.92 5.24 -343.45 -1.80 -35.72 16 6 C -0.23 -12.62 10.47 84.03 0.88 -11.74 16 7 H 0.06 3.85 8.06 -2.91 -0.02 3.82 16 8 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 9 N -0.98 -61.79 13.97 21.65 0.30 -61.49 16 10 Si 0.94 45.14 26.36 68.60 1.81 46.95 16 11 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 12 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 13 H -0.26 -12.13 5.63 99.48 0.56 -11.57 16 14 N -0.71 -20.09 4.51 -442.52 -1.99 -22.08 16 15 C 0.52 16.24 5.71 87.66 0.50 16.74 16 16 O -0.57 -22.83 16.19 15.14 0.25 -22.59 16 17 C 0.07 1.58 3.43 30.49 0.10 1.69 16 18 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 19 O -0.38 -10.26 10.37 -130.82 -1.36 -11.61 16 20 C 0.05 0.81 7.26 72.32 0.52 1.33 16 21 C -0.11 -1.90 3.94 -9.32 -0.04 -1.93 16 22 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 23 C -0.11 -1.95 6.40 31.30 0.20 -1.75 16 24 C -0.13 -3.29 6.84 31.70 0.22 -3.07 16 25 C -0.14 -4.07 5.23 31.84 0.17 -3.91 16 26 C -0.11 -2.58 3.90 -8.68 -0.03 -2.61 16 27 H 0.12 2.45 8.14 -2.38 -0.02 2.43 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.36 16.18 4.99 -92.71 -0.46 15.72 16 34 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.41 10.22 8.60 -92.71 -0.80 9.42 16 36 H 0.10 1.56 7.06 -2.39 -0.02 1.54 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.25 7.03 -2.39 -0.02 1.23 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.06 1.98 7.09 -2.39 -0.02 1.96 16 43 H 0.04 1.58 5.41 -2.39 -0.01 1.57 16 Total: -1.00 -73.98 335.02 1.11 -72.87 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.39 Total: 34.68 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 4.30 Total: -1.00 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -3.49 Total: -119.29 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -1.11 Total: -34.20 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.81 Total: 46.95 kcal Total: -73.98 1.11 -72.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754235321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.709 kcal (2) G-P(sol) polarization free energy of solvation -73.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds