Wall clock time and date at job start Tue Mar 31 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20763 * 120.00074 * 2 1 4 4 C 1.50696 * 120.00108 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47705 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47544 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47186 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99936 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00347 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00573 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46990 * 325.00265 * 10 9 7 12 12 C 1.52997 * 109.47430 * 204.99724 * 10 9 7 13 13 N 1.46510 * 109.46971 * 55.00029 * 12 10 9 14 14 C 1.36928 * 119.99813 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00208 * 0.02562 * 14 13 12 16 16 C 1.38818 * 119.99781 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99759 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47138 * 90.00466 * 18 16 14 20 20 H 1.48503 * 109.46950 * 209.99822 * 18 16 14 21 21 H 1.48500 * 109.47463 * 330.00196 * 18 16 14 22 22 C 1.53003 * 109.47194 * 84.99642 * 10 9 7 23 23 C 1.53001 * 117.51964 * 231.28709 * 22 10 9 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 10 25 25 H 1.08993 * 109.46990 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46603 * 300.00031 * 1 2 3 27 27 H 1.09000 * 109.46782 * 59.99331 * 1 2 3 28 28 H 1.09000 * 109.46965 * 59.99515 * 4 2 1 29 29 H 1.09000 * 109.47102 * 300.00269 * 4 2 1 30 30 H 1.09009 * 109.46903 * 59.99799 * 5 4 2 31 31 H 1.09000 * 109.47163 * 300.00357 * 5 4 2 32 32 H 1.08995 * 109.47186 * 60.00130 * 6 5 4 33 33 H 1.09005 * 109.46828 * 300.00180 * 6 5 4 34 34 H 0.97002 * 119.99812 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47132 * 174.99771 * 12 10 9 36 36 H 1.08998 * 109.47469 * 295.00258 * 12 10 9 37 37 H 0.96992 * 119.99894 * 0.02562 * 13 12 10 38 38 H 0.96998 * 119.99897 * 180.02562 * 17 16 14 39 39 H 1.09002 * 115.54973 * 85.58492 * 22 10 9 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 10 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 10 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7648 -1.0256 -0.0011 6 6 4.5297 -2.3506 -0.0011 7 6 6.0113 -2.0753 -0.0009 8 8 6.4156 -0.9318 -0.0014 9 7 6.8872 -3.0996 -0.0014 10 6 8.3275 -2.8320 -0.0018 11 1 8.5307 -1.9379 -0.5912 12 6 9.0676 -4.0241 -0.6118 13 7 8.5254 -4.3061 -1.9434 14 6 9.0360 -5.3368 -2.6862 15 1 9.8380 -5.9422 -2.2904 16 6 8.5219 -5.6044 -3.9476 17 7 7.5441 -4.8670 -4.4298 18 14 9.2179 -7.0110 -4.9608 19 1 8.4652 -8.2557 -4.6625 20 1 9.0916 -6.6904 -6.4053 21 1 10.6503 -7.2050 -4.6201 22 6 8.8064 -2.6154 1.4351 23 6 9.6261 -1.3564 1.7248 24 6 8.1826 -1.4604 2.2211 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.9971 -1.8762 -0.8908 29 1 1.9972 -1.8770 0.8891 30 1 4.0285 -0.4542 0.8890 31 1 4.0278 -0.4538 -0.8910 32 1 4.2662 -2.9223 -0.8908 33 1 4.2666 -2.9220 0.8892 34 1 6.5638 -4.0142 -0.0014 35 1 10.1288 -3.7895 -0.6939 36 1 8.9369 -4.8981 0.0262 37 1 7.8053 -3.7622 -2.2989 38 1 7.1846 -5.0542 -5.3111 39 1 9.0615 -3.5201 1.9870 40 1 10.4204 -1.4328 2.4673 41 1 9.8246 -0.6823 0.8916 42 1 7.4312 -0.8548 1.7144 43 1 8.0272 -1.6054 3.2903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754434331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:56 Heat of formation + Delta-G solvation = -55.786272 kcal Electronic energy + Delta-G solvation = -22111.391543 eV Core-core repulsion = 18771.305260 eV Total energy + Delta-G solvation = -3340.086284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.89641 -39.44721 -37.22678 -34.98797 -34.21908 -33.33297 -31.22229 -30.81191 -28.63297 -27.29398 -24.05815 -22.70209 -22.05926 -21.46989 -20.20382 -19.90676 -19.68639 -17.32549 -16.65756 -16.23071 -16.11490 -15.57751 -15.25271 -15.03832 -14.89978 -14.49655 -14.19729 -13.44790 -13.35892 -13.14547 -12.87167 -12.74912 -12.42740 -12.25080 -11.93702 -11.82049 -11.62415 -11.42676 -11.16022 -10.99525 -10.90876 -10.81618 -10.74002 -10.19077 -10.07762 -9.92541 -9.81747 -9.68947 -9.35985 -8.92829 -8.54932 -6.97789 -5.80061 -3.09683 1.82094 3.00214 3.40444 3.43271 3.46666 3.48279 3.90319 4.20548 4.54450 4.69582 4.87680 4.88903 4.92540 5.05190 5.13552 5.17633 5.21154 5.31510 5.39657 5.43982 5.51595 5.51886 5.56311 5.68971 5.78643 5.85132 5.88413 5.94430 6.11422 6.13651 6.24713 6.36232 6.40177 6.52722 6.56374 6.70823 7.00488 7.37512 7.66363 7.95150 8.37903 8.64101 9.49788 10.05688 10.41465 11.42316 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.004089 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.420452 B = 6845.841162 C = 8731.890636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.351 3.649 3 O -0.456 6.456 4 C -0.174 4.174 5 C -0.095 4.095 6 C -0.142 4.142 7 C 0.515 3.485 8 O -0.546 6.546 9 N -0.709 5.709 10 C 0.168 3.832 11 H 0.086 0.914 12 C 0.148 3.852 13 N -0.731 5.731 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.162 4.162 23 C -0.172 4.172 24 C -0.185 4.185 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.403 0.597 35 H 0.034 0.966 36 H 0.024 0.976 37 H 0.386 0.614 38 H 0.255 0.745 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.141 4.566 13.296 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.227 3.773 3 O -0.329 6.329 4 C -0.212 4.212 5 C -0.133 4.133 6 C -0.182 4.182 7 C 0.302 3.698 8 O -0.425 6.425 9 N -0.359 5.359 10 C 0.063 3.937 11 H 0.104 0.896 12 C 0.020 3.980 13 N -0.376 5.376 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.182 4.182 23 C -0.210 4.210 24 C -0.222 4.222 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.238 0.762 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.220 0.780 38 H 0.065 0.935 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.136 0.864 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.414 5.791 13.219 17.797 hybrid contribution -0.045 -1.335 -0.736 1.526 sum -10.459 4.456 12.483 16.884 Atomic orbital electron populations 1.22279 0.94780 1.04529 1.04614 1.24670 0.91803 0.90533 0.70335 1.90447 1.71895 1.35265 1.35313 1.22217 0.96854 0.97386 1.04707 1.21127 0.91373 0.96126 1.04661 1.21673 0.92276 0.99787 1.04466 1.20540 0.88573 0.85234 0.75467 1.90617 1.80279 1.21517 1.50056 1.45979 1.06262 1.09521 1.74090 1.20769 0.79643 1.00284 0.92990 0.89554 1.20913 0.95924 0.93180 0.87970 1.42347 1.43465 1.38076 1.13743 1.19219 1.14363 1.06675 0.97050 0.91147 1.24747 0.98878 0.99552 0.97649 1.69666 1.28680 1.41144 1.18474 0.86185 0.78412 0.81866 0.79674 1.21730 1.21773 1.20768 1.22650 1.05122 0.93144 0.97272 1.22880 0.94355 1.00326 1.03395 1.23258 0.97299 1.02445 0.99215 0.90026 0.89265 0.89166 0.88095 0.88384 0.90875 0.90546 0.88483 0.89219 0.76205 0.94804 0.95801 0.78003 0.93498 0.88008 0.89289 0.88781 0.86423 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.23 10.33 36.01 0.37 -0.86 16 2 C 0.35 3.41 7.27 -29.04 -0.21 3.20 16 3 O -0.46 -6.56 16.72 6.00 0.10 -6.46 16 4 C -0.17 -1.45 5.55 -27.89 -0.15 -1.60 16 5 C -0.09 -1.15 3.79 -26.73 -0.10 -1.25 16 6 C -0.14 -1.66 5.70 -27.89 -0.16 -1.82 16 7 C 0.52 8.15 7.16 -10.99 -0.08 8.07 16 8 O -0.55 -10.38 13.01 5.55 0.07 -10.31 16 9 N -0.71 -11.17 4.50 -53.81 -0.24 -11.41 16 10 C 0.17 2.87 2.43 -67.93 -0.17 2.71 16 11 H 0.09 1.71 7.34 -51.93 -0.38 1.33 16 12 C 0.15 2.90 5.80 -4.04 -0.02 2.88 16 13 N -0.73 -18.02 5.43 -59.91 -0.33 -18.35 16 14 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 17 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 18 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 C -0.16 -2.36 5.36 -90.61 -0.49 -2.85 16 23 C -0.17 -2.37 10.18 -26.73 -0.27 -2.64 16 24 C -0.19 -2.64 9.73 -26.73 -0.26 -2.90 16 25 H 0.08 0.31 8.00 -51.93 -0.42 -0.10 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.99 8.06 -51.92 -0.42 0.57 16 31 H 0.08 1.13 8.06 -51.93 -0.42 0.71 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.40 5.95 8.60 -40.82 -0.35 5.60 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.39 10.14 7.33 -40.82 -0.30 9.84 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.10 1.37 8.11 -51.93 -0.42 0.95 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 42 H 0.12 1.95 5.02 -51.93 -0.26 1.69 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -33.56 358.52 -8.23 -41.80 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -7.16 Total: 13.53 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.79 Total: -4.26 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.16 Total: -56.74 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.17 Total: -16.77 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.56 -8.23 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.991 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds