Wall clock time and date at job start Tue Mar 31 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20763 * 120.00074 * 2 1 4 4 C 1.50696 * 120.00108 * 180.02562 * 2 1 3 5 5 C 1.52997 * 109.47705 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.47544 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47186 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99936 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00347 * 180.02562 * 7 6 5 10 10 C 1.46495 * 120.00573 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.46990 * 325.00265 * 10 9 7 12 12 C 1.52997 * 109.47430 * 204.99724 * 10 9 7 13 13 N 1.46510 * 109.46971 * 55.00029 * 12 10 9 14 14 C 1.36928 * 119.99813 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00208 * 0.02562 * 14 13 12 16 16 C 1.38818 * 119.99781 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00201 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99759 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47138 * 90.00466 * 18 16 14 20 20 H 1.48503 * 109.46950 * 209.99822 * 18 16 14 21 21 H 1.48500 * 109.47463 * 330.00196 * 18 16 14 22 22 C 1.53003 * 109.47194 * 84.99642 * 10 9 7 23 23 C 1.53001 * 117.51964 * 231.28709 * 22 10 9 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 10 25 25 H 1.08993 * 109.46990 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46603 * 300.00031 * 1 2 3 27 27 H 1.09000 * 109.46782 * 59.99331 * 1 2 3 28 28 H 1.09000 * 109.46965 * 59.99515 * 4 2 1 29 29 H 1.09000 * 109.47102 * 300.00269 * 4 2 1 30 30 H 1.09009 * 109.46903 * 59.99799 * 5 4 2 31 31 H 1.09000 * 109.47163 * 300.00357 * 5 4 2 32 32 H 1.08995 * 109.47186 * 60.00130 * 6 5 4 33 33 H 1.09005 * 109.46828 * 300.00180 * 6 5 4 34 34 H 0.97002 * 119.99812 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47132 * 174.99771 * 12 10 9 36 36 H 1.08998 * 109.47469 * 295.00258 * 12 10 9 37 37 H 0.96992 * 119.99894 * 0.02562 * 13 12 10 38 38 H 0.96998 * 119.99897 * 180.02562 * 17 16 14 39 39 H 1.09002 * 115.54973 * 85.58492 * 22 10 9 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 10 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 10 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3050 -0.0006 5 6 3.7648 -1.0256 -0.0011 6 6 4.5297 -2.3506 -0.0011 7 6 6.0113 -2.0753 -0.0009 8 8 6.4156 -0.9318 -0.0014 9 7 6.8872 -3.0996 -0.0014 10 6 8.3275 -2.8320 -0.0018 11 1 8.5307 -1.9379 -0.5912 12 6 9.0676 -4.0241 -0.6118 13 7 8.5254 -4.3061 -1.9434 14 6 9.0360 -5.3368 -2.6862 15 1 9.8380 -5.9422 -2.2904 16 6 8.5219 -5.6044 -3.9476 17 7 7.5441 -4.8670 -4.4298 18 14 9.2179 -7.0110 -4.9608 19 1 8.4652 -8.2557 -4.6625 20 1 9.0916 -6.6904 -6.4053 21 1 10.6503 -7.2050 -4.6201 22 6 8.8064 -2.6154 1.4351 23 6 9.6261 -1.3564 1.7248 24 6 8.1826 -1.4604 2.2211 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.9971 -1.8762 -0.8908 29 1 1.9972 -1.8770 0.8891 30 1 4.0285 -0.4542 0.8890 31 1 4.0278 -0.4538 -0.8910 32 1 4.2662 -2.9223 -0.8908 33 1 4.2666 -2.9220 0.8892 34 1 6.5638 -4.0142 -0.0014 35 1 10.1288 -3.7895 -0.6939 36 1 8.9369 -4.8981 0.0262 37 1 7.8053 -3.7622 -2.2989 38 1 7.1846 -5.0542 -5.3111 39 1 9.0615 -3.5201 1.9870 40 1 10.4204 -1.4328 2.4673 41 1 9.8246 -0.6823 0.8916 42 1 7.4312 -0.8548 1.7144 43 1 8.0272 -1.6054 3.2903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754434331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:55 Heat of formation + Delta-G solvation = -78.397746 kcal Electronic energy + Delta-G solvation = -22112.372051 eV Core-core repulsion = 18771.305260 eV Total energy + Delta-G solvation = -3341.066791 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.10951 -40.38211 -38.50428 -36.61891 -35.19482 -34.93393 -32.99578 -31.62540 -29.98943 -28.40258 -25.91060 -23.82799 -23.16987 -23.02303 -21.42479 -21.17530 -20.47042 -19.23756 -17.95962 -17.38668 -17.11667 -16.69985 -16.49560 -16.36101 -15.90535 -15.78673 -15.48757 -15.06999 -14.80855 -14.54395 -14.29191 -13.78673 -13.31455 -13.18154 -13.09808 -12.83193 -12.76213 -12.72226 -12.65005 -12.42285 -12.36627 -12.24197 -12.08312 -11.84746 -11.69286 -11.26111 -11.10522 -10.97991 -10.76051 -10.46180 -9.88462 -9.01531 -7.94029 -5.23813 1.08117 1.49171 1.50665 1.58955 1.75336 2.23439 2.56478 3.01100 3.24580 3.40264 3.58533 3.78804 3.96679 4.08448 4.10153 4.12767 4.16250 4.19535 4.35005 4.46973 4.55760 4.57411 4.63768 4.73004 4.75622 4.80077 4.82459 4.89543 4.92910 5.03724 5.12391 5.19598 5.25110 5.28728 5.36188 5.41292 5.50669 5.64975 6.26518 6.65947 6.69592 7.34008 7.39219 8.06457 8.31338 9.28985 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012728 B = 0.004089 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.420452 B = 6845.841162 C = 8731.890636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.349 3.651 3 O -0.517 6.517 4 C -0.169 4.169 5 C -0.091 4.091 6 C -0.131 4.131 7 C 0.505 3.495 8 O -0.585 6.585 9 N -0.705 5.705 10 C 0.177 3.823 11 H 0.051 0.949 12 C 0.151 3.849 13 N -0.742 5.742 14 C -0.245 4.245 15 H 0.078 0.922 16 C -0.072 4.072 17 N -0.967 5.967 18 Si 0.974 3.026 19 H -0.283 1.283 20 H -0.299 1.299 21 H -0.272 1.272 22 C -0.161 4.161 23 C -0.169 4.169 24 C -0.181 4.181 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.107 0.893 33 H 0.128 0.872 34 H 0.410 0.590 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.374 0.626 38 H 0.250 0.750 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.900 2.355 14.881 19.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.229 3.771 3 O -0.395 6.395 4 C -0.206 4.206 5 C -0.130 4.130 6 C -0.171 4.171 7 C 0.294 3.706 8 O -0.466 6.466 9 N -0.355 5.355 10 C 0.072 3.928 11 H 0.069 0.931 12 C 0.024 3.976 13 N -0.386 5.386 14 C -0.377 4.377 15 H 0.096 0.904 16 C -0.265 4.265 17 N -0.618 5.618 18 Si 0.803 3.197 19 H -0.210 1.210 20 H -0.226 1.226 21 H -0.197 1.197 22 C -0.181 4.181 23 C -0.206 4.206 24 C -0.218 4.218 25 H 0.131 0.869 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.142 0.858 29 H 0.153 0.847 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.125 0.875 33 H 0.146 0.854 34 H 0.246 0.754 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.206 0.794 38 H 0.059 0.941 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.168 3.539 14.844 18.910 hybrid contribution 0.229 -0.608 -1.193 1.359 sum -10.939 2.931 13.651 17.737 Atomic orbital electron populations 1.22287 0.91513 1.06739 1.04993 1.25393 0.93739 0.90056 0.67913 1.90443 1.73347 1.37237 1.38431 1.22277 0.93469 0.97384 1.07449 1.21022 0.94551 0.95641 1.01742 1.21701 0.88792 0.99927 1.06661 1.21348 0.90326 0.84533 0.74393 1.90609 1.81183 1.23110 1.51673 1.45952 1.05734 1.09948 1.73910 1.20494 0.80535 0.97582 0.94200 0.93096 1.21022 0.95787 0.94685 0.86078 1.42510 1.43245 1.37395 1.15407 1.19624 1.13931 1.06794 0.97322 0.90385 1.25546 0.99656 1.02257 0.99011 1.69826 1.30325 1.43051 1.18598 0.85143 0.78188 0.79017 0.77382 1.20993 1.22627 1.19666 1.22565 1.05662 0.94258 0.95575 1.22963 0.94958 0.99304 1.03415 1.23184 0.96883 1.01655 1.00115 0.86923 0.88505 0.88969 0.85845 0.84690 0.93008 0.94488 0.87475 0.85375 0.75401 0.94992 0.93922 0.79365 0.94073 0.85895 0.86564 0.90467 0.89054 0.87648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.94 10.33 71.24 0.74 -1.20 16 2 C 0.35 6.54 7.27 29.10 0.21 6.75 16 3 O -0.52 -15.63 16.72 -1.46 -0.02 -15.66 16 4 C -0.17 -2.47 5.55 29.85 0.17 -2.30 16 5 C -0.09 -2.24 3.79 30.59 0.12 -2.13 16 6 C -0.13 -2.93 5.70 29.85 0.17 -2.76 16 7 C 0.51 16.26 7.16 87.66 0.63 16.89 16 8 O -0.58 -23.48 13.01 -3.05 -0.04 -23.52 16 9 N -0.71 -22.12 4.50 -442.54 -1.99 -24.11 16 10 C 0.18 6.09 2.43 44.99 0.11 6.20 16 11 H 0.05 2.12 7.34 -2.38 -0.02 2.10 16 12 C 0.15 5.82 5.80 86.38 0.50 6.32 16 13 N -0.74 -36.66 5.43 -343.44 -1.87 -38.53 16 14 C -0.25 -13.29 9.99 84.04 0.84 -12.45 16 15 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 16 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 17 N -0.97 -58.23 13.06 21.65 0.28 -57.94 16 18 Si 0.97 45.17 29.55 68.60 2.03 47.20 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 C -0.16 -4.47 5.36 -10.79 -0.06 -4.53 16 23 C -0.17 -4.47 10.18 30.59 0.31 -4.16 16 24 C -0.18 -4.99 9.73 30.60 0.30 -4.69 16 25 H 0.11 0.41 8.00 -2.39 -0.02 0.39 16 26 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.47 8.06 -2.38 -0.02 1.45 16 31 H 0.04 1.17 8.06 -2.39 -0.02 1.15 16 32 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.13 1.89 8.14 -2.38 -0.02 1.88 16 34 H 0.41 11.67 8.60 -92.71 -0.80 10.88 16 35 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.37 20.05 7.33 -92.71 -0.68 19.37 16 38 H 0.25 14.67 8.31 -92.71 -0.77 13.89 16 39 H 0.12 2.94 8.11 -2.39 -0.02 2.93 16 40 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.08 2.30 8.05 -2.39 -0.02 2.28 16 42 H 0.09 3.09 5.02 -2.39 -0.01 3.08 16 43 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 Total: -1.00 -76.18 358.52 2.41 -73.76 By element: Atomic # 1 Polarization: 40.92 SS G_CDS: -0.47 Total: 40.45 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: 4.50 Total: -1.66 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -3.57 Total: -120.58 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.06 Total: -39.17 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -76.18 2.41 -73.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.637 kcal (2) G-P(sol) polarization free energy of solvation -76.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds