Wall clock time and date at job start Tue Mar 31 2020 06:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20755 * 119.99627 * 2 1 4 4 C 1.50692 * 119.99866 * 179.97438 * 2 1 3 5 5 C 1.53006 * 109.47200 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47053 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.46780 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99995 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99703 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99726 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47007 * 34.99037 * 10 9 7 12 12 C 1.52996 * 109.47012 * 154.99585 * 10 9 7 13 13 N 1.46498 * 109.47059 * 304.99483 * 12 10 9 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 10 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.53003 * 109.46609 * 274.99704 * 10 9 7 23 23 C 1.52996 * 117.49852 * 128.74926 * 22 10 9 24 24 C 1.52995 * 117.50233 * 60.08634 * 22 10 9 25 25 H 1.08993 * 109.47250 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47304 * 300.00285 * 1 2 3 27 27 H 1.09000 * 109.46913 * 60.00295 * 1 2 3 28 28 H 1.09000 * 109.47565 * 60.00423 * 4 2 1 29 29 H 1.09004 * 109.47727 * 299.99954 * 4 2 1 30 30 H 1.09000 * 109.46678 * 59.99682 * 5 4 2 31 31 H 1.08996 * 109.47019 * 300.00003 * 5 4 2 32 32 H 1.09000 * 109.47753 * 60.00200 * 6 5 4 33 33 H 1.09006 * 109.47172 * 299.99712 * 6 5 4 34 34 H 0.97000 * 119.99883 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47066 * 184.99751 * 12 10 9 36 36 H 1.08994 * 109.46974 * 64.99899 * 12 10 9 37 37 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 38 38 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 39 39 H 1.09006 * 115.54473 * 274.41180 * 22 10 9 40 40 H 1.08997 * 117.49676 * 359.97438 * 23 22 10 41 41 H 1.08999 * 117.49788 * 145.01561 * 23 22 10 42 42 H 1.09001 * 117.49820 * 214.97543 * 24 22 10 43 43 H 1.09004 * 117.49643 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7648 -1.0255 0.0011 6 6 4.5297 -2.3505 0.0011 7 6 6.0114 -2.0751 0.0022 8 8 6.4156 -0.9317 0.0025 9 7 6.8872 -3.0996 0.0018 10 6 8.3276 -2.8319 0.0024 11 1 8.5308 -1.9381 0.5923 12 6 9.0677 -4.0243 0.6116 13 7 8.5256 -4.3071 1.9429 14 6 9.0321 -5.3423 2.6826 15 1 9.8342 -5.9474 2.2864 16 6 8.5147 -5.6139 3.9418 17 7 9.0018 -6.6084 4.6529 18 14 7.1270 -4.5677 4.6268 19 1 5.8220 -5.1588 4.2359 20 1 7.2260 -4.5223 6.1077 21 1 7.2297 -3.1903 4.0814 22 6 8.8063 -2.6143 -1.4344 23 6 9.6264 -1.3554 -1.7228 24 6 8.1823 -1.4590 -2.2197 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.9972 -1.8770 -0.8892 29 1 1.9972 -1.8763 0.8908 30 1 4.0277 -0.4537 0.8911 31 1 4.0284 -0.4542 -0.8889 32 1 4.2667 -2.9220 -0.8891 33 1 4.2661 -2.9223 0.8909 34 1 6.5638 -4.0141 0.0012 35 1 10.1290 -3.7898 0.6937 36 1 8.9369 -4.8979 -0.0270 37 1 7.8051 -3.7639 2.2987 38 1 8.6405 -6.7980 5.5330 39 1 9.0614 -3.5187 -1.9869 40 1 9.8246 -0.6819 -0.8890 41 1 10.4208 -1.4313 -2.4653 42 1 8.0273 -1.6031 -3.2890 43 1 7.4304 -0.8542 -1.7129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754434332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:58 Heat of formation + Delta-G solvation = -51.686831 kcal Electronic energy + Delta-G solvation = -22245.515803 eV Core-core repulsion = 18905.607284 eV Total energy + Delta-G solvation = -3339.908519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05569 -39.57211 -37.36515 -35.18024 -34.36365 -33.46535 -31.42792 -30.97232 -28.98015 -27.56600 -24.03269 -22.78525 -22.14211 -21.32408 -20.37062 -20.07009 -19.80048 -17.82607 -16.84975 -16.38004 -16.24751 -15.70111 -15.40743 -15.08649 -14.93666 -14.68250 -14.22618 -13.74594 -13.46247 -13.24058 -12.90498 -12.77759 -12.54417 -12.39261 -12.07372 -11.97313 -11.90474 -11.57500 -11.26942 -11.22683 -11.05424 -10.91505 -10.88521 -10.23949 -10.16519 -9.97874 -9.91724 -9.64435 -9.51718 -8.97175 -8.73302 -7.30454 -5.82065 -3.18307 1.72245 2.80821 3.25972 3.31545 3.38025 3.41454 3.79753 4.09925 4.54102 4.57319 4.73893 4.76500 4.77716 4.90524 5.03430 5.05681 5.11676 5.21981 5.26113 5.31192 5.37530 5.40784 5.46493 5.51219 5.61648 5.71253 5.77115 5.82215 5.90882 5.98359 6.07541 6.21953 6.29912 6.40803 6.46358 6.57700 6.84004 7.27555 7.75816 7.93467 8.36447 8.45082 9.15268 9.87408 10.06982 11.36157 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.004750 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.331909 B = 5893.477939 C = 7827.109096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.351 3.649 3 O -0.455 6.455 4 C -0.175 4.175 5 C -0.096 4.096 6 C -0.144 4.144 7 C 0.512 3.488 8 O -0.542 6.542 9 N -0.714 5.714 10 C 0.164 3.836 11 H 0.087 0.913 12 C 0.153 3.847 13 N -0.755 5.755 14 C -0.246 4.246 15 H 0.091 0.909 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.881 3.119 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.277 1.277 22 C -0.162 4.162 23 C -0.171 4.171 24 C -0.185 4.185 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.404 0.596 35 H 0.043 0.957 36 H 0.033 0.967 37 H 0.362 0.638 38 H 0.260 0.740 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.455 8.686 -14.091 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.227 3.773 3 O -0.329 6.329 4 C -0.212 4.212 5 C -0.134 4.134 6 C -0.184 4.184 7 C 0.299 3.701 8 O -0.421 6.421 9 N -0.364 5.364 10 C 0.059 3.941 11 H 0.105 0.895 12 C 0.025 3.975 13 N -0.401 5.401 14 C -0.376 4.376 15 H 0.109 0.891 16 C -0.189 4.189 17 N -0.580 5.580 18 Si 0.712 3.288 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.204 1.204 22 C -0.182 4.182 23 C -0.209 4.209 24 C -0.222 4.222 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.239 0.761 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.195 0.805 38 H 0.070 0.930 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.683 9.851 -14.000 21.915 hybrid contribution -1.142 -0.072 0.625 1.303 sum -14.825 9.779 -13.376 22.233 Atomic orbital electron populations 1.22279 0.94685 1.04566 1.04682 1.24659 0.91849 0.90474 0.70352 1.90448 1.71899 1.35247 1.35296 1.22222 0.96749 0.97492 1.04749 1.21138 0.91472 0.96010 1.04757 1.21703 0.92205 0.99938 1.04521 1.20599 0.88621 0.85293 0.75620 1.90627 1.80251 1.21444 1.49734 1.46075 1.06448 1.09578 1.74325 1.20850 0.79461 1.00306 0.93466 0.89492 1.20891 0.96226 0.93425 0.86917 1.42699 1.43673 1.38154 1.15599 1.19051 1.15604 1.05570 0.97346 0.89103 1.24655 0.99393 0.98031 0.96835 1.69694 1.44613 1.31125 1.12570 0.86592 0.83082 0.80492 0.78676 1.21045 1.21618 1.20352 1.22618 1.05213 0.93349 0.97000 1.22898 0.94367 1.00165 1.03423 1.23266 0.97310 1.02332 0.99303 0.90010 0.89139 0.89187 0.88259 0.88171 0.90608 0.90675 0.88869 0.88761 0.76142 0.93906 0.94869 0.80454 0.92994 0.87770 0.88782 0.89137 0.89898 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.11 10.33 36.01 0.37 -0.74 16 2 C 0.35 3.15 7.27 -29.04 -0.21 2.94 16 3 O -0.46 -6.23 16.72 6.00 0.10 -6.13 16 4 C -0.17 -1.30 5.55 -27.88 -0.15 -1.45 16 5 C -0.10 -1.06 3.79 -26.73 -0.10 -1.16 16 6 C -0.14 -1.51 5.70 -27.88 -0.16 -1.67 16 7 C 0.51 7.47 7.16 -10.98 -0.08 7.39 16 8 O -0.54 -9.66 13.01 5.56 0.07 -9.58 16 9 N -0.71 -10.35 4.50 -53.80 -0.24 -10.59 16 10 C 0.16 2.62 2.43 -67.93 -0.17 2.45 16 11 H 0.09 1.59 7.34 -51.93 -0.38 1.21 16 12 C 0.15 2.84 5.80 -4.04 -0.02 2.81 16 13 N -0.76 -17.42 5.24 -59.91 -0.31 -17.73 16 14 C -0.25 -6.82 10.47 -15.06 -0.16 -6.98 16 15 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 16 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 17 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 18 Si 0.88 21.91 27.74 -169.99 -4.71 17.20 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 22 C -0.16 -2.22 5.36 -90.62 -0.49 -2.70 16 23 C -0.17 -2.22 10.18 -26.70 -0.27 -2.49 16 24 C -0.19 -2.49 9.74 -26.70 -0.26 -2.75 16 25 H 0.08 0.26 8.00 -51.93 -0.42 -0.15 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 31 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.40 5.33 8.60 -40.82 -0.35 4.98 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.36 8.34 5.20 -40.82 -0.21 8.13 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 40 H 0.09 1.29 8.05 -51.93 -0.42 0.88 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.12 1.83 5.02 -51.93 -0.26 1.57 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -34.62 355.40 -7.87 -42.49 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -7.12 Total: 11.39 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.79 Total: -4.24 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.22 Total: -56.49 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.17 Total: -15.71 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.62 -7.87 -42.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.193 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds