Wall clock time and date at job start Tue Mar 31 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20755 * 119.99627 * 2 1 4 4 C 1.50692 * 119.99866 * 179.97438 * 2 1 3 5 5 C 1.53006 * 109.47200 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47053 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.46780 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99995 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99703 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99726 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.47007 * 34.99037 * 10 9 7 12 12 C 1.52996 * 109.47012 * 154.99585 * 10 9 7 13 13 N 1.46498 * 109.47059 * 304.99483 * 12 10 9 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 10 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.53003 * 109.46609 * 274.99704 * 10 9 7 23 23 C 1.52996 * 117.49852 * 128.74926 * 22 10 9 24 24 C 1.52995 * 117.50233 * 60.08634 * 22 10 9 25 25 H 1.08993 * 109.47250 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47304 * 300.00285 * 1 2 3 27 27 H 1.09000 * 109.46913 * 60.00295 * 1 2 3 28 28 H 1.09000 * 109.47565 * 60.00423 * 4 2 1 29 29 H 1.09004 * 109.47727 * 299.99954 * 4 2 1 30 30 H 1.09000 * 109.46678 * 59.99682 * 5 4 2 31 31 H 1.08996 * 109.47019 * 300.00003 * 5 4 2 32 32 H 1.09000 * 109.47753 * 60.00200 * 6 5 4 33 33 H 1.09006 * 109.47172 * 299.99712 * 6 5 4 34 34 H 0.97000 * 119.99883 * 359.97438 * 9 7 6 35 35 H 1.09004 * 109.47066 * 184.99751 * 12 10 9 36 36 H 1.08994 * 109.46974 * 64.99899 * 12 10 9 37 37 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 38 38 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 39 39 H 1.09006 * 115.54473 * 274.41180 * 22 10 9 40 40 H 1.08997 * 117.49676 * 359.97438 * 23 22 10 41 41 H 1.08999 * 117.49788 * 145.01561 * 23 22 10 42 42 H 1.09001 * 117.49820 * 214.97543 * 24 22 10 43 43 H 1.09004 * 117.49643 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3050 0.0006 5 6 3.7648 -1.0255 0.0011 6 6 4.5297 -2.3505 0.0011 7 6 6.0114 -2.0751 0.0022 8 8 6.4156 -0.9317 0.0025 9 7 6.8872 -3.0996 0.0018 10 6 8.3276 -2.8319 0.0024 11 1 8.5308 -1.9381 0.5923 12 6 9.0677 -4.0243 0.6116 13 7 8.5256 -4.3071 1.9429 14 6 9.0321 -5.3423 2.6826 15 1 9.8342 -5.9474 2.2864 16 6 8.5147 -5.6139 3.9418 17 7 9.0018 -6.6084 4.6529 18 14 7.1270 -4.5677 4.6268 19 1 5.8220 -5.1588 4.2359 20 1 7.2260 -4.5223 6.1077 21 1 7.2297 -3.1903 4.0814 22 6 8.8063 -2.6143 -1.4344 23 6 9.6264 -1.3554 -1.7228 24 6 8.1823 -1.4590 -2.2197 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.9972 -1.8770 -0.8892 29 1 1.9972 -1.8763 0.8908 30 1 4.0277 -0.4537 0.8911 31 1 4.0284 -0.4542 -0.8889 32 1 4.2667 -2.9220 -0.8891 33 1 4.2661 -2.9223 0.8909 34 1 6.5638 -4.0141 0.0012 35 1 10.1290 -3.7898 0.6937 36 1 8.9369 -4.8979 -0.0270 37 1 7.8051 -3.7639 2.2987 38 1 8.6405 -6.7980 5.5330 39 1 9.0614 -3.5187 -1.9869 40 1 9.8246 -0.6819 -0.8890 41 1 10.4208 -1.4313 -2.4653 42 1 8.0273 -1.6031 -3.2890 43 1 7.4304 -0.8542 -1.7129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754434332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:57 Heat of formation + Delta-G solvation = -75.645418 kcal Electronic energy + Delta-G solvation = -22246.554725 eV Core-core repulsion = 18905.607284 eV Total energy + Delta-G solvation = -3340.947441 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17008 -40.40792 -38.56097 -36.76389 -35.22405 -34.98748 -33.32809 -31.67874 -30.30632 -28.50953 -25.76064 -23.80985 -23.17908 -22.95207 -21.50040 -21.22707 -20.49584 -19.78210 -18.00961 -17.42493 -17.15821 -16.70341 -16.46636 -16.41875 -16.11951 -15.80988 -15.50547 -15.10262 -14.78750 -14.61610 -14.41246 -13.93244 -13.56865 -13.34523 -13.12272 -12.91612 -12.80029 -12.74479 -12.67193 -12.52592 -12.38935 -12.25843 -12.12858 -11.85271 -11.71415 -11.28210 -11.13339 -11.03498 -10.79926 -10.49061 -9.95490 -9.33795 -8.04291 -5.38151 1.06299 1.33835 1.38882 1.44864 1.69411 2.17595 2.45425 2.98379 3.22202 3.27497 3.41837 3.74902 3.85795 4.01033 4.06711 4.09620 4.12906 4.13885 4.27982 4.41099 4.53147 4.55143 4.59313 4.71328 4.72253 4.79172 4.81021 4.87381 4.90805 5.02690 5.07817 5.16955 5.23521 5.27295 5.33809 5.39425 5.58164 5.74674 6.19042 6.63232 6.64996 7.04879 7.33614 7.79752 7.98827 9.17063 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012212 B = 0.004750 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.331909 B = 5893.477939 C = 7827.109096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.349 3.651 3 O -0.517 6.517 4 C -0.169 4.169 5 C -0.093 4.093 6 C -0.134 4.134 7 C 0.504 3.496 8 O -0.581 6.581 9 N -0.711 5.711 10 C 0.174 3.826 11 H 0.059 0.941 12 C 0.154 3.846 13 N -0.756 5.756 14 C -0.233 4.233 15 H 0.062 0.938 16 C -0.058 4.058 17 N -0.981 5.981 18 Si 0.950 3.050 19 H -0.263 1.263 20 H -0.298 1.298 21 H -0.270 1.270 22 C -0.161 4.161 23 C -0.170 4.170 24 C -0.180 4.180 25 H 0.112 0.888 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.135 0.865 29 H 0.125 0.875 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.413 0.587 35 H 0.038 0.962 36 H 0.048 0.952 37 H 0.364 0.636 38 H 0.258 0.742 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.844 8.124 -15.625 24.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.229 3.771 3 O -0.395 6.395 4 C -0.206 4.206 5 C -0.131 4.131 6 C -0.174 4.174 7 C 0.292 3.708 8 O -0.461 6.461 9 N -0.362 5.362 10 C 0.069 3.931 11 H 0.077 0.923 12 C 0.027 3.973 13 N -0.402 5.402 14 C -0.364 4.364 15 H 0.080 0.920 16 C -0.249 4.249 17 N -0.631 5.631 18 Si 0.777 3.223 19 H -0.188 1.188 20 H -0.225 1.225 21 H -0.196 1.196 22 C -0.181 4.181 23 C -0.207 4.207 24 C -0.217 4.217 25 H 0.131 0.869 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.153 0.847 29 H 0.143 0.857 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.148 0.852 33 H 0.130 0.870 34 H 0.249 0.751 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.198 0.802 38 H 0.067 0.933 39 H 0.140 0.860 40 H 0.098 0.902 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.101 9.275 -15.583 24.251 hybrid contribution -0.304 0.101 1.042 1.090 sum -16.405 9.377 -14.541 23.843 Atomic orbital electron populations 1.22294 0.91661 1.06733 1.04958 1.25389 0.93686 0.90122 0.67916 1.90444 1.73321 1.37272 1.38428 1.22285 0.93517 0.97298 1.07525 1.21041 0.94496 0.95711 1.01896 1.21752 0.88636 0.99987 1.07004 1.21398 0.90330 0.84547 0.74482 1.90624 1.81144 1.23061 1.51317 1.46050 1.05758 1.10174 1.74234 1.20549 0.80457 0.97631 0.94458 0.92296 1.21009 0.96111 0.95026 0.85108 1.42676 1.43657 1.36970 1.16894 1.19036 1.14176 1.05639 0.97521 0.91978 1.25412 1.02493 0.99624 0.97421 1.69864 1.46733 1.33440 1.13064 0.85500 0.80643 0.78987 0.77139 1.18808 1.22531 1.19588 1.22548 1.05681 0.94305 0.95564 1.22982 0.94944 0.99328 1.03483 1.23192 0.96876 1.01564 1.00098 0.86914 0.88988 0.88617 0.84735 0.85669 0.94236 0.93045 0.85221 0.87023 0.75108 0.94415 0.93368 0.80245 0.93264 0.85980 0.90223 0.86790 0.87808 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 10.33 71.24 0.74 -0.88 16 2 C 0.35 5.79 7.27 29.10 0.21 6.00 16 3 O -0.52 -14.55 16.72 -1.43 -0.02 -14.57 16 4 C -0.17 -2.01 5.55 29.85 0.17 -1.84 16 5 C -0.09 -1.98 3.79 30.59 0.12 -1.86 16 6 C -0.13 -2.46 5.70 29.85 0.17 -2.29 16 7 C 0.50 14.13 7.16 87.66 0.63 14.76 16 8 O -0.58 -21.03 13.01 -3.02 -0.04 -21.07 16 9 N -0.71 -19.43 4.50 -442.51 -1.99 -21.42 16 10 C 0.17 5.41 2.43 44.99 0.11 5.52 16 11 H 0.06 2.18 7.34 -2.39 -0.02 2.16 16 12 C 0.15 5.55 5.80 86.38 0.50 6.05 16 13 N -0.76 -34.21 5.24 -343.46 -1.80 -36.01 16 14 C -0.23 -12.94 10.47 84.03 0.88 -12.06 16 15 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 16 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 17 N -0.98 -61.77 13.97 21.65 0.30 -61.47 16 18 Si 0.95 44.98 27.74 68.60 1.90 46.88 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 21 H -0.27 -12.31 6.52 99.48 0.65 -11.66 16 22 C -0.16 -4.14 5.36 -10.80 -0.06 -4.20 16 23 C -0.17 -4.20 10.18 30.62 0.31 -3.88 16 24 C -0.18 -4.58 9.74 30.62 0.30 -4.28 16 25 H 0.11 0.22 8.00 -2.39 -0.02 0.20 16 26 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.04 1.10 8.06 -2.39 -0.02 1.09 16 31 H 0.05 1.31 8.06 -2.39 -0.02 1.29 16 32 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.41 9.80 8.60 -92.71 -0.80 9.00 16 35 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.36 16.24 5.20 -92.71 -0.48 15.76 16 38 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 39 H 0.12 2.73 8.11 -2.38 -0.02 2.72 16 40 H 0.08 2.20 8.05 -2.39 -0.02 2.18 16 41 H 0.11 2.27 8.14 -2.39 -0.02 2.26 16 42 H 0.10 2.19 8.14 -2.39 -0.02 2.18 16 43 H 0.09 2.91 5.02 -2.38 -0.01 2.90 16 Total: -1.00 -78.87 355.40 2.56 -76.31 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: -0.33 Total: 33.18 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 4.54 Total: -1.83 kcal Atomic # 7 Polarization: -115.41 SS G_CDS: -3.49 Total: -118.90 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.06 Total: -35.64 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.88 kcal Total: -78.87 2.56 -76.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754434332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.667 kcal (2) G-P(sol) polarization free energy of solvation -78.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds