Wall clock time and date at job start Tue Mar 31 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47631 * 2 1 4 4 O 1.42901 * 109.47186 * 239.99830 * 2 1 3 5 5 C 1.42900 * 114.00149 * 90.00007 * 4 2 1 6 6 C 1.52997 * 109.47107 * 180.02562 * 5 4 2 7 7 C 1.52998 * 117.49631 * 243.62196 * 6 5 4 8 8 C 1.53003 * 117.49573 * 174.99930 * 6 5 4 9 9 C 1.50704 * 109.47220 * 119.99818 * 2 1 3 10 10 O 1.21285 * 120.00146 * 119.99616 * 9 2 1 11 11 N 1.34777 * 120.00147 * 300.00084 * 9 2 1 12 12 C 1.46499 * 119.99817 * 359.97438 * 11 9 2 13 13 C 1.46494 * 120.00251 * 179.97438 * 11 9 2 14 14 C 1.53942 * 113.74261 * 218.74260 * 13 11 9 15 15 N 1.47819 * 86.03666 * 222.07894 * 14 13 11 16 16 C 1.36937 * 134.45891 * 204.63587 * 15 14 13 17 17 H 1.07997 * 119.99527 * 173.34742 * 16 15 14 18 18 C 1.38812 * 119.99997 * 353.35694 * 16 15 14 19 19 N 1.31620 * 119.99843 * 5.05323 * 18 16 15 20 20 Si 1.86802 * 119.99835 * 185.06021 * 18 16 15 21 21 H 1.48498 * 109.46988 * 94.99000 * 20 18 16 22 22 H 1.48500 * 109.46796 * 214.98561 * 20 18 16 23 23 H 1.48492 * 109.47061 * 334.98608 * 20 18 16 24 24 C 1.47583 * 91.04868 * 24.54970 * 15 14 13 25 25 H 1.09008 * 109.46985 * 299.99950 * 1 2 3 26 26 H 1.08997 * 109.46966 * 59.99916 * 1 2 3 27 27 H 1.09004 * 109.47593 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46851 * 300.00447 * 5 4 2 29 29 H 1.08998 * 109.46966 * 60.00180 * 5 4 2 30 30 H 1.09002 * 115.55067 * 29.32978 * 6 5 4 31 31 H 1.08999 * 117.50185 * 359.97438 * 7 6 5 32 32 H 1.08993 * 117.49888 * 145.02796 * 7 6 5 33 33 H 1.09002 * 117.49723 * 214.97775 * 8 6 5 34 34 H 1.09001 * 117.49675 * 0.02562 * 8 6 5 35 35 H 1.08998 * 109.47428 * 90.00163 * 12 11 9 36 36 H 1.09003 * 109.46897 * 210.00420 * 12 11 9 37 37 H 1.09005 * 109.47193 * 329.99854 * 12 11 9 38 38 H 1.09006 * 112.94309 * 350.32813 * 13 11 9 39 39 H 1.08999 * 113.76995 * 336.34298 * 14 13 11 40 40 H 1.08999 * 113.77482 * 107.74315 * 14 13 11 41 41 H 0.97003 * 119.99678 * 179.97438 * 19 18 16 42 42 H 1.09000 * 113.76647 * 221.15189 * 24 15 14 43 43 H 1.08995 * 113.77322 * 89.75032 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2001 0.1828 -2.2941 6 6 2.7079 -0.6409 -3.4791 7 6 4.1048 -0.3209 -4.0150 8 6 2.8666 0.0759 -4.8215 9 6 2.0323 -0.7104 1.2305 10 8 2.7296 -1.6965 1.1193 11 7 1.7068 -0.2499 2.4546 12 6 0.8649 0.9415 2.5890 13 6 2.1946 -0.9408 3.6508 14 6 1.1629 -1.0091 4.7912 15 7 2.2903 -0.6899 5.6924 16 6 2.5483 -0.9066 7.0197 17 1 3.5174 -0.6615 7.4284 18 6 1.5642 -1.4415 7.8396 19 7 0.4184 -1.8328 7.3234 20 14 1.8661 -1.6059 9.6758 21 1 1.3087 -0.4215 10.3770 22 1 1.2030 -2.8360 10.1782 23 1 3.3263 -1.6909 9.9316 24 6 3.0268 -0.0461 4.5873 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.2538 0.6546 -2.5588 29 1 2.9320 0.9512 -2.0450 30 1 2.3870 -1.6825 -3.4996 31 1 4.6618 0.4767 -3.5236 32 1 4.7032 -1.1520 -4.3881 33 1 2.6505 -0.4941 -5.7251 34 1 2.6096 1.1345 -4.8601 35 1 -0.1831 0.6441 2.6222 36 1 1.1229 1.4668 3.5086 37 1 1.0289 1.6003 1.7362 38 1 2.6647 -1.8983 3.4264 39 1 0.4036 -0.2285 4.7441 40 1 0.7436 -2.0033 4.9455 41 1 -0.2691 -2.2069 7.8964 42 1 4.0929 -0.2730 4.5790 43 1 2.8161 1.0179 4.4800 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754571285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:42 Heat of formation + Delta-G solvation = 13.583202 kcal Electronic energy + Delta-G solvation = -22445.775587 eV Core-core repulsion = 19108.697389 eV Total energy + Delta-G solvation = -3337.078198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.14811 -38.59422 -37.57375 -36.49126 -34.66922 -32.22610 -31.11741 -27.68179 -27.32232 -26.74631 -24.83543 -24.48491 -22.68244 -22.58452 -21.04267 -19.85878 -18.55772 -17.51713 -16.80570 -16.50807 -16.18097 -15.90881 -15.18643 -14.96984 -14.77296 -14.27861 -13.90397 -13.78553 -13.59268 -12.93977 -12.70527 -12.52886 -12.36856 -11.90545 -11.81439 -11.71733 -11.63378 -11.52181 -11.32950 -11.15191 -10.89244 -10.75240 -10.72143 -10.52086 -10.25165 -10.06275 -9.82030 -9.57989 -9.19929 -8.81753 -8.15079 -6.92074 -5.82092 -3.14044 2.79515 2.91416 3.37889 3.42583 3.45326 3.46713 3.78555 4.43456 4.49754 4.57965 4.61115 4.74703 4.79409 4.93839 5.05010 5.16465 5.18878 5.23968 5.32266 5.37827 5.41233 5.45305 5.50845 5.57078 5.60554 5.72087 5.80592 5.81797 5.94276 6.01834 6.10144 6.14801 6.42758 6.56901 6.75976 6.98790 7.17500 7.33209 7.50575 7.74215 7.92836 8.46984 9.00139 9.66160 10.53899 11.35726 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046674 B = 0.002977 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.758387 B = 9403.058778 C = 9635.114939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 H 0.083 0.917 4 O -0.354 6.354 5 C 0.091 3.909 6 C -0.151 4.151 7 C -0.177 4.177 8 C -0.175 4.175 9 C 0.511 3.489 10 O -0.524 6.524 11 N -0.598 5.598 12 C 0.073 3.927 13 C 0.091 3.909 14 C 0.160 3.840 15 N -0.606 5.606 16 C -0.224 4.224 17 H 0.082 0.918 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.108 3.892 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.255 0.745 42 H 0.047 0.953 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.034 8.441 -20.858 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.012 3.988 3 H 0.101 0.899 4 O -0.272 6.272 5 C 0.014 3.986 6 C -0.169 4.169 7 C -0.214 4.214 8 C -0.212 4.212 9 C 0.298 3.702 10 O -0.399 6.399 11 N -0.332 5.332 12 C -0.070 4.070 13 C -0.012 4.012 14 C 0.034 3.966 15 N -0.333 5.333 16 C -0.351 4.351 17 H 0.100 0.900 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.019 4.019 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.133 0.867 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.314 7.586 -20.583 21.938 hybrid contribution -0.093 0.400 1.063 1.140 sum 0.221 7.986 -19.520 21.091 Atomic orbital electron populations 1.22496 0.93708 1.04245 1.03593 1.21888 0.95103 0.96056 0.85752 0.89928 1.88047 1.86510 1.33880 1.18726 1.22088 0.99061 0.91985 0.85432 1.22108 1.00468 1.01145 0.93200 1.23070 0.90883 1.03621 1.03787 1.22980 1.02687 1.01026 0.94543 1.20321 0.80771 0.85023 0.84133 1.90700 1.37275 1.25819 1.86146 1.47962 1.50748 1.28862 1.05647 1.21970 0.94864 0.87247 1.02898 1.24074 0.98725 0.96949 0.81490 1.22608 0.90397 1.00450 0.83139 1.45689 1.17588 1.64665 1.05335 1.18999 0.97639 1.36631 0.81858 0.90002 1.24841 0.95904 1.01307 0.98241 1.69835 1.06203 1.46360 1.34108 0.86086 0.77519 0.77230 0.84882 1.21581 1.21634 1.20475 1.22979 0.96399 0.95297 0.87254 0.89647 0.91628 0.91035 0.92814 0.93171 0.86669 0.88652 0.88543 0.88425 0.88732 0.91953 0.90168 0.91705 0.86642 0.94819 0.90911 0.93527 0.93500 0.94689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.16 37.16 0.34 -1.52 16 2 C 0.07 0.92 2.34 -27.88 -0.07 0.86 16 3 H 0.08 0.82 7.04 -51.93 -0.37 0.46 16 4 O -0.35 -4.95 9.52 -55.14 -0.52 -5.48 16 5 C 0.09 0.91 6.03 37.16 0.22 1.14 16 6 C -0.15 -1.44 6.06 -90.62 -0.55 -1.98 16 7 C -0.18 -1.47 10.18 -26.73 -0.27 -1.74 16 8 C -0.18 -1.25 10.25 -26.73 -0.27 -1.52 16 9 C 0.51 8.67 7.15 -10.98 -0.08 8.59 16 10 O -0.52 -11.25 15.98 -14.36 -0.23 -11.48 16 11 N -0.60 -9.75 3.09 -175.74 -0.54 -10.30 16 12 C 0.07 0.90 7.39 59.85 0.44 1.34 16 13 C 0.09 1.83 4.40 -70.15 -0.31 1.53 16 14 C 0.16 3.75 6.88 -2.84 -0.02 3.73 16 15 N -0.61 -15.61 3.70 -177.87 -0.66 -16.27 16 16 C -0.22 -6.29 10.70 -15.06 -0.16 -6.46 16 17 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 18 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 19 N -0.92 -27.14 11.51 55.49 0.64 -26.50 16 20 Si 0.91 22.09 29.56 -169.99 -5.02 17.07 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.11 2.25 8.46 -2.96 -0.03 2.23 16 25 H 0.08 0.77 4.53 -51.92 -0.24 0.53 16 26 H 0.06 0.53 7.87 -51.93 -0.41 0.12 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.44 7.87 -51.93 -0.41 0.03 16 29 H 0.05 0.46 7.82 -51.93 -0.41 0.05 16 30 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.71 6.95 -51.93 -0.36 0.35 16 36 H 0.08 1.06 6.35 -51.93 -0.33 0.73 16 37 H 0.06 0.58 6.01 -51.93 -0.31 0.26 16 38 H 0.12 2.57 7.22 -51.93 -0.37 2.20 16 39 H 0.03 0.77 6.83 -51.93 -0.35 0.41 16 40 H 0.07 1.92 7.37 -51.93 -0.38 1.53 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.04 0.68 6.84 -51.93 -0.36 0.33 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -33.98 344.90 -8.78 -42.76 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.79 Total: -0.92 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.84 Total: 5.92 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.56 Total: -53.07 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.75 Total: -16.96 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.98 -8.78 -42.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754571285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.348 kcal (2) G-P(sol) polarization free energy of solvation -33.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds