Wall clock time and date at job start Tue Mar 31 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47631 * 2 1 4 4 O 1.42901 * 109.47186 * 239.99830 * 2 1 3 5 5 C 1.42900 * 114.00149 * 90.00007 * 4 2 1 6 6 C 1.52997 * 109.47107 * 180.02562 * 5 4 2 7 7 C 1.52998 * 117.49631 * 243.62196 * 6 5 4 8 8 C 1.53003 * 117.49573 * 174.99930 * 6 5 4 9 9 C 1.50704 * 109.47220 * 119.99818 * 2 1 3 10 10 O 1.21285 * 120.00146 * 119.99616 * 9 2 1 11 11 N 1.34777 * 120.00147 * 300.00084 * 9 2 1 12 12 C 1.46499 * 119.99817 * 359.97438 * 11 9 2 13 13 C 1.46494 * 120.00251 * 179.97438 * 11 9 2 14 14 C 1.53942 * 113.74261 * 218.74260 * 13 11 9 15 15 N 1.47819 * 86.03666 * 222.07894 * 14 13 11 16 16 C 1.36937 * 134.45891 * 204.63587 * 15 14 13 17 17 H 1.07997 * 119.99527 * 173.34742 * 16 15 14 18 18 C 1.38812 * 119.99997 * 353.35694 * 16 15 14 19 19 N 1.31620 * 119.99843 * 5.05323 * 18 16 15 20 20 Si 1.86802 * 119.99835 * 185.06021 * 18 16 15 21 21 H 1.48498 * 109.46988 * 94.99000 * 20 18 16 22 22 H 1.48500 * 109.46796 * 214.98561 * 20 18 16 23 23 H 1.48492 * 109.47061 * 334.98608 * 20 18 16 24 24 C 1.47583 * 91.04868 * 24.54970 * 15 14 13 25 25 H 1.09008 * 109.46985 * 299.99950 * 1 2 3 26 26 H 1.08997 * 109.46966 * 59.99916 * 1 2 3 27 27 H 1.09004 * 109.47593 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46851 * 300.00447 * 5 4 2 29 29 H 1.08998 * 109.46966 * 60.00180 * 5 4 2 30 30 H 1.09002 * 115.55067 * 29.32978 * 6 5 4 31 31 H 1.08999 * 117.50185 * 359.97438 * 7 6 5 32 32 H 1.08993 * 117.49888 * 145.02796 * 7 6 5 33 33 H 1.09002 * 117.49723 * 214.97775 * 8 6 5 34 34 H 1.09001 * 117.49675 * 0.02562 * 8 6 5 35 35 H 1.08998 * 109.47428 * 90.00163 * 12 11 9 36 36 H 1.09003 * 109.46897 * 210.00420 * 12 11 9 37 37 H 1.09005 * 109.47193 * 329.99854 * 12 11 9 38 38 H 1.09006 * 112.94309 * 350.32813 * 13 11 9 39 39 H 1.08999 * 113.76995 * 336.34298 * 14 13 11 40 40 H 1.08999 * 113.77482 * 107.74315 * 14 13 11 41 41 H 0.97003 * 119.99678 * 179.97438 * 19 18 16 42 42 H 1.09000 * 113.76647 * 221.15189 * 24 15 14 43 43 H 1.08995 * 113.77322 * 89.75032 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.2001 0.1828 -2.2941 6 6 2.7079 -0.6409 -3.4791 7 6 4.1048 -0.3209 -4.0150 8 6 2.8666 0.0759 -4.8215 9 6 2.0323 -0.7104 1.2305 10 8 2.7296 -1.6965 1.1193 11 7 1.7068 -0.2499 2.4546 12 6 0.8649 0.9415 2.5890 13 6 2.1946 -0.9408 3.6508 14 6 1.1629 -1.0091 4.7912 15 7 2.2903 -0.6899 5.6924 16 6 2.5483 -0.9066 7.0197 17 1 3.5174 -0.6615 7.4284 18 6 1.5642 -1.4415 7.8396 19 7 0.4184 -1.8328 7.3234 20 14 1.8661 -1.6059 9.6758 21 1 1.3087 -0.4215 10.3770 22 1 1.2030 -2.8360 10.1782 23 1 3.3263 -1.6909 9.9316 24 6 3.0268 -0.0461 4.5873 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.2538 0.6546 -2.5588 29 1 2.9320 0.9512 -2.0450 30 1 2.3870 -1.6825 -3.4996 31 1 4.6618 0.4767 -3.5236 32 1 4.7032 -1.1520 -4.3881 33 1 2.6505 -0.4941 -5.7251 34 1 2.6096 1.1345 -4.8601 35 1 -0.1831 0.6441 2.6222 36 1 1.1229 1.4668 3.5086 37 1 1.0289 1.6003 1.7362 38 1 2.6647 -1.8983 3.4264 39 1 0.4036 -0.2285 4.7441 40 1 0.7436 -2.0033 4.9455 41 1 -0.2691 -2.2069 7.8964 42 1 4.0929 -0.2730 4.5790 43 1 2.8161 1.0179 4.4800 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754571285.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:41 Heat of formation + Delta-G solvation = -8.112285 kcal Electronic energy + Delta-G solvation = -22446.716373 eV Core-core repulsion = 19108.697389 eV Total energy + Delta-G solvation = -3338.018985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.47944 -39.78199 -38.85809 -37.40033 -36.11457 -34.15476 -32.25040 -29.50458 -28.24552 -27.79874 -26.64638 -25.88903 -24.13359 -23.24062 -21.80959 -21.30012 -20.05714 -18.87543 -18.46905 -17.67803 -17.44781 -16.93970 -16.70970 -16.22534 -16.01839 -15.71619 -15.22957 -14.89255 -14.61523 -14.34368 -13.84257 -13.70070 -13.54918 -13.32274 -13.25490 -13.21212 -12.82321 -12.73072 -12.58832 -12.46633 -12.36588 -12.11019 -11.96938 -11.88685 -11.56683 -11.38687 -11.25360 -10.88799 -10.79158 -10.33361 -9.58397 -8.96622 -7.95708 -5.29218 1.45317 1.47176 1.53047 1.56536 1.72911 2.45485 2.66496 2.99261 3.22706 3.38500 3.50356 3.78712 3.85255 3.92023 3.97220 4.08134 4.13775 4.24292 4.32252 4.35928 4.42538 4.49959 4.63273 4.67795 4.70362 4.76140 4.78674 4.82649 4.85874 4.95830 5.02183 5.17630 5.19880 5.23213 5.26210 5.27908 5.44981 5.65422 5.86744 6.14718 6.46499 6.87069 7.15323 7.55195 8.49350 9.22124 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.046674 B = 0.002977 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.758387 B = 9403.058778 C = 9635.114939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.081 3.919 3 H 0.120 0.880 4 O -0.389 6.389 5 C 0.088 3.912 6 C -0.175 4.175 7 C -0.187 4.187 8 C -0.152 4.152 9 C 0.504 3.496 10 O -0.581 6.581 11 N -0.595 5.595 12 C 0.065 3.935 13 C 0.113 3.887 14 C 0.166 3.834 15 N -0.637 5.637 16 C -0.237 4.237 17 H 0.086 0.914 18 C -0.064 4.064 19 N -0.951 5.951 20 Si 0.982 3.018 21 H -0.283 1.283 22 H -0.295 1.295 23 H -0.268 1.268 24 C 0.116 3.884 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.251 0.749 42 H 0.049 0.951 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 11.182 -22.148 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.020 3.980 3 H 0.137 0.863 4 O -0.308 6.308 5 C 0.012 3.988 6 C -0.194 4.194 7 C -0.223 4.223 8 C -0.189 4.189 9 C 0.293 3.707 10 O -0.460 6.460 11 N -0.328 5.328 12 C -0.076 4.076 13 C 0.008 3.992 14 C 0.040 3.960 15 N -0.364 5.364 16 C -0.365 4.365 17 H 0.103 0.897 18 C -0.258 4.258 19 N -0.599 5.599 20 Si 0.809 3.191 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.193 1.193 24 C -0.010 4.010 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.083 10.380 -21.907 24.242 hybrid contribution 0.015 -0.459 1.364 1.439 sum 0.098 9.922 -20.543 22.814 Atomic orbital electron populations 1.22496 0.91636 1.03508 1.05797 1.21941 0.96371 0.96525 0.83188 0.86277 1.88020 1.86898 1.35961 1.19924 1.22305 1.00594 0.91729 0.84169 1.22140 1.01678 1.00727 0.94835 1.23160 0.90931 1.03881 1.04374 1.23074 1.00539 1.01809 0.93450 1.21300 0.79630 0.84440 0.85379 1.90672 1.39890 1.28484 1.86984 1.47918 1.50906 1.29617 1.04334 1.22311 0.94696 0.86009 1.04632 1.23318 0.97014 0.96269 0.82647 1.22467 0.90753 0.98481 0.84297 1.45995 1.19049 1.65827 1.05569 1.19379 0.97905 1.36014 0.83243 0.89654 1.25693 0.95893 1.01560 1.02618 1.70014 1.07032 1.47587 1.35308 0.85018 0.77818 0.76810 0.79432 1.20975 1.22156 1.19255 1.23071 0.96169 0.96478 0.85251 0.88167 0.88618 0.93309 0.90443 0.92111 0.88578 0.88255 0.88713 0.87484 0.86986 0.90754 0.90812 0.87245 0.89517 0.93801 0.94912 0.94050 0.93317 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 9.16 71.98 0.66 -2.38 16 2 C 0.08 1.82 2.34 29.85 0.07 1.89 16 3 H 0.12 1.81 7.04 -2.39 -0.02 1.79 16 4 O -0.39 -10.40 9.52 -129.94 -1.24 -11.64 16 5 C 0.09 1.55 6.03 71.98 0.43 1.98 16 6 C -0.18 -3.13 6.06 -10.79 -0.07 -3.20 16 7 C -0.19 -2.87 10.18 30.60 0.31 -2.56 16 8 C -0.15 -1.79 10.25 30.60 0.31 -1.47 16 9 C 0.50 16.76 7.15 87.66 0.63 17.38 16 10 O -0.58 -25.73 15.98 15.99 0.26 -25.47 16 11 N -0.59 -18.74 3.09 -828.30 -2.56 -21.31 16 12 C 0.06 1.38 7.39 127.77 0.94 2.32 16 13 C 0.11 4.61 4.40 46.75 0.21 4.82 16 14 C 0.17 7.96 6.88 86.44 0.59 8.56 16 15 N -0.64 -33.21 3.70 -716.66 -2.65 -35.87 16 16 C -0.24 -13.47 10.70 84.03 0.90 -12.57 16 17 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 18 C -0.06 -3.68 5.50 84.86 0.47 -3.22 16 19 N -0.95 -57.59 11.51 21.65 0.25 -57.34 16 20 Si 0.98 45.84 29.56 68.60 2.03 47.86 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 C 0.12 4.79 8.46 86.49 0.73 5.52 16 25 H 0.10 1.40 4.53 -2.38 -0.01 1.39 16 26 H 0.10 1.10 7.87 -2.39 -0.02 1.08 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 0.97 7.87 -2.39 -0.02 0.95 16 29 H 0.06 0.92 7.82 -2.39 -0.02 0.90 16 30 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.10 1.42 8.03 -2.39 -0.02 1.40 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.45 6.95 -2.39 -0.02 1.43 16 36 H 0.07 1.72 6.35 -2.39 -0.02 1.70 16 37 H 0.11 1.38 6.01 -2.38 -0.01 1.37 16 38 H 0.09 4.07 7.22 -2.38 -0.02 4.05 16 39 H 0.04 2.00 6.83 -2.39 -0.02 1.99 16 40 H 0.03 1.81 7.37 -2.39 -0.02 1.79 16 41 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.06 2.33 6.84 -2.39 -0.02 2.31 16 Total: -1.00 -77.33 344.90 3.27 -74.06 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.99 Total: 12.61 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 6.19 Total: 17.08 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -4.96 Total: -114.51 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.98 Total: -37.11 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -77.33 3.27 -74.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754571285.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.949 kcal (2) G-P(sol) polarization free energy of solvation -77.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds