Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42907 * 109.46784 * 2 1 4 4 C 1.42900 * 113.99486 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46542 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00319 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99817 * 179.72193 * 5 4 3 8 8 C 1.44510 * 116.65212 * 353.93542 * 7 5 4 9 9 C 1.51821 * 112.61114 * 154.30735 * 8 7 5 10 10 C 1.51333 * 111.95716 * 42.68773 * 9 8 7 11 11 C 1.50772 * 113.46794 * 304.54927 * 10 9 8 12 12 H 1.09009 * 108.56884 * 169.46157 * 11 10 9 13 13 C 1.53900 * 110.59005 * 289.11549 * 11 10 9 14 14 N 1.46830 * 107.50076 * 140.15406 * 13 11 10 15 15 C 1.36926 * 125.37706 * 181.04658 * 14 13 11 16 16 H 1.08001 * 120.00445 * 359.97438 * 15 14 13 17 17 C 1.38819 * 119.99782 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99953 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99885 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47096 * 90.00343 * 19 17 15 21 21 H 1.48495 * 109.47304 * 209.99874 * 19 17 15 22 22 H 1.48503 * 109.47280 * 330.00423 * 19 17 15 23 23 C 1.46904 * 109.24267 * 1.04939 * 14 13 11 24 24 C 1.44118 * 116.65007 * 174.18558 * 7 5 4 25 25 H 1.09005 * 109.49076 * 75.22818 * 24 7 5 26 26 H 1.09000 * 109.46775 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46927 * 299.99587 * 1 2 3 28 28 H 1.08993 * 109.47635 * 60.00273 * 1 2 3 29 29 H 1.08999 * 109.47078 * 240.00146 * 2 1 3 30 30 H 1.08993 * 109.47635 * 119.99726 * 2 1 3 31 31 H 1.09004 * 109.47314 * 60.00152 * 4 3 2 32 32 H 1.08998 * 109.47494 * 299.99480 * 4 3 2 33 33 H 1.09001 * 108.82671 * 275.31894 * 8 7 5 34 34 H 1.08999 * 108.83069 * 33.63565 * 8 7 5 35 35 H 1.09004 * 109.15048 * 281.96670 * 9 8 7 36 36 H 1.08993 * 108.88216 * 163.23152 * 9 8 7 37 37 H 1.08999 * 108.68159 * 183.51690 * 10 9 8 38 38 H 1.08999 * 108.68192 * 65.57993 * 10 9 8 39 39 H 1.09004 * 109.84406 * 20.67412 * 13 11 10 40 40 H 1.08997 * 109.93977 * 259.69647 * 13 11 10 41 41 H 0.96998 * 119.99902 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.08776 * 222.86178 * 23 14 13 43 43 H 1.08997 * 110.13718 * 101.31003 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8193 2.9163 -0.0012 6 8 2.9609 3.7730 -0.0016 7 7 5.1208 3.2665 0.0039 8 6 6.0799 2.1949 0.1461 9 6 7.4304 2.5363 -0.4575 10 6 7.8554 3.9512 -0.1296 11 6 6.8441 4.9920 -0.5386 12 1 7.1350 5.9484 -0.1039 13 6 6.7976 5.1288 -2.0708 14 7 5.3905 5.2927 -2.4570 15 6 4.9309 5.4258 -3.7399 16 1 5.6260 5.4151 -4.5664 17 6 3.5715 5.5744 -3.9782 18 7 2.7244 5.5879 -2.9709 19 14 2.9445 5.7566 -5.7284 20 1 2.6432 4.4146 -6.2885 21 1 1.7098 6.5815 -5.7286 22 1 3.9821 6.4183 -6.5596 23 6 4.5538 5.2916 -1.2495 24 6 5.4126 4.6716 -0.1275 25 1 5.1994 5.1770 0.8145 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5137 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 3.8333 0.9768 -0.8908 32 1 3.8340 0.9766 0.8892 33 1 6.2092 1.9770 1.2063 34 1 5.6896 1.3054 -0.3485 35 1 7.3765 2.4247 -1.5405 36 1 8.1761 1.8433 -0.0683 37 1 8.7965 4.1599 -0.6383 38 1 8.0186 4.0264 0.9455 39 1 7.2065 4.2313 -2.5350 40 1 7.3713 6.0012 -2.3836 41 1 1.7745 5.6921 -3.1374 42 1 3.6606 4.6888 -1.4136 43 1 4.2736 6.3115 -0.9862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754871860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = -36.024152 kcal Electronic energy + Delta-G solvation = -24080.899114 eV Core-core repulsion = 20741.669780 eV Total energy + Delta-G solvation = -3339.229334 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44071 -38.15745 -36.92756 -35.35146 -33.11028 -32.03400 -31.38374 -29.69064 -28.04769 -26.29099 -25.58383 -23.88970 -22.73706 -22.00088 -20.80755 -19.31790 -17.81794 -17.10565 -16.62546 -16.35464 -16.08561 -15.62057 -15.00918 -14.50729 -14.37157 -14.01148 -13.87233 -13.64489 -13.37374 -12.85687 -12.53276 -12.37673 -12.19759 -12.06500 -11.66537 -11.50931 -11.32159 -11.14400 -10.97179 -10.89546 -10.74730 -10.51255 -10.24236 -10.17375 -9.96373 -9.80393 -9.54354 -9.51338 -8.83900 -8.37015 -7.82807 -6.63845 -5.45707 -2.89069 3.13958 3.27586 3.48279 3.52305 3.55786 4.10750 4.61150 4.81554 4.92066 4.98456 5.06288 5.14438 5.19492 5.28774 5.32879 5.37330 5.37906 5.48289 5.57942 5.66712 5.69592 5.76399 5.86450 5.95171 5.96932 6.04829 6.10812 6.18027 6.25229 6.29312 6.51261 6.67762 6.78245 6.84773 7.15497 7.27700 7.68037 7.80543 7.88828 8.22101 8.63598 8.89653 9.38553 10.00358 10.64054 11.56292 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.008118 C = 0.005233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.618728 B = 3448.258713 C = 5349.533844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.360 6.360 4 C 0.048 3.952 5 C 0.499 3.501 6 O -0.479 6.479 7 N -0.588 5.588 8 C 0.117 3.883 9 C -0.127 4.127 10 C -0.101 4.101 11 C -0.101 4.101 12 H 0.077 0.923 13 C 0.142 3.858 14 N -0.602 5.602 15 C -0.235 4.235 16 H 0.074 0.926 17 C -0.007 4.007 18 N -0.903 5.903 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.137 3.863 24 C 0.134 3.866 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.253 0.747 42 H 0.140 0.860 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.385 -12.198 9.231 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.278 6.278 4 C -0.032 4.032 5 C 0.284 3.716 6 O -0.351 6.351 7 N -0.324 5.324 8 C -0.007 4.007 9 C -0.165 4.165 10 C -0.139 4.139 11 C -0.120 4.120 12 H 0.095 0.905 13 C 0.015 3.985 14 N -0.329 5.329 15 C -0.363 4.363 16 H 0.092 0.908 17 C -0.204 4.204 18 N -0.550 5.550 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.217 1.217 22 H -0.209 1.209 23 C 0.012 3.988 24 C 0.030 3.970 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.157 0.843 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 5.612 -11.493 9.132 15.715 hybrid contribution 0.111 -0.157 -0.966 0.985 sum 5.723 -11.650 8.166 15.335 Atomic orbital electron populations 1.21717 0.93628 1.01809 1.03621 1.22493 0.95919 0.83965 0.99711 1.88078 1.18836 1.25586 1.95270 1.22303 0.83535 0.95942 1.01422 1.20098 0.82956 0.90160 0.78348 1.90769 1.49075 1.50737 1.44504 1.46525 1.05208 1.06902 1.73792 1.20804 0.90428 0.89772 0.99707 1.21131 0.95722 0.97355 1.02277 1.20531 0.98508 0.94134 1.00772 1.21294 0.93969 0.98686 0.98097 0.90505 1.21271 0.88809 0.97434 0.90959 1.44342 0.99668 1.85902 1.02990 1.18946 0.91170 1.43833 0.82366 0.90797 1.24854 0.96057 1.02237 0.97231 1.69918 1.01876 1.55351 1.27809 0.86191 0.78288 0.77445 0.84232 1.21772 1.21684 1.20877 1.22391 0.95761 0.98899 0.81711 1.21211 0.95914 0.79618 1.00270 0.92461 0.91330 0.91788 0.91494 0.93432 0.93657 0.90740 0.91229 0.92941 0.91377 0.91040 0.90991 0.91636 0.92521 0.96179 0.96387 0.93639 0.84310 0.96162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 37.16 0.38 -1.34 16 2 C 0.06 0.70 6.66 37.16 0.25 0.95 16 3 O -0.36 -6.39 9.88 -55.14 -0.54 -6.93 16 4 C 0.05 0.76 4.76 36.01 0.17 0.93 16 5 C 0.50 10.21 6.97 -10.98 -0.08 10.14 16 6 O -0.48 -12.27 13.63 -14.35 -0.20 -12.47 16 7 N -0.59 -10.77 3.08 -169.70 -0.52 -11.30 16 8 C 0.12 1.53 5.71 -5.70 -0.03 1.50 16 9 C -0.13 -1.56 5.85 -28.17 -0.16 -1.73 16 10 C -0.10 -1.34 5.09 -28.69 -0.15 -1.49 16 11 C -0.10 -1.78 2.97 -91.61 -0.27 -2.06 16 12 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 13 C 0.14 3.04 6.74 -3.39 -0.02 3.02 16 14 N -0.60 -16.28 3.39 -171.29 -0.58 -16.86 16 15 C -0.23 -6.88 10.25 -15.06 -0.15 -7.04 16 16 H 0.07 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 18 N -0.90 -28.48 10.18 55.49 0.56 -27.92 16 19 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 23 C 0.14 3.65 4.65 -3.14 -0.01 3.64 16 24 C 0.13 2.76 3.21 -68.86 -0.22 2.54 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.07 7.41 -51.93 -0.38 0.69 16 32 H 0.07 0.83 7.89 -51.93 -0.41 0.42 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.79 6.07 -51.93 -0.32 0.47 16 35 H 0.07 1.01 7.10 -51.93 -0.37 0.64 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.02 0.43 6.71 -51.93 -0.35 0.08 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 42 H 0.14 4.13 3.07 -51.93 -0.16 3.97 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -36.23 329.86 -8.76 -44.99 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.03 Total: -1.43 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.40 Total: 8.77 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.54 Total: -56.07 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.74 Total: -19.40 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.23 -8.76 -44.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754871860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.965 kcal (2) G-P(sol) polarization free energy of solvation -36.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds