Wall clock time and date at job start Tue Mar 31 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99986 * 2 1 4 4 C 1.53008 * 109.47071 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46815 * 64.99746 * 4 3 2 6 6 C 1.42909 * 113.99667 * 179.97438 * 5 4 3 7 7 H 1.08998 * 110.87361 * 32.39451 * 6 5 4 8 8 C 1.55140 * 110.98965 * 268.54796 * 6 5 4 9 9 C 1.54323 * 103.01576 * 206.21954 * 8 6 5 10 10 N 1.47437 * 107.23398 * 22.28305 * 9 8 6 11 11 C 1.46904 * 110.99881 * 123.25802 * 10 9 8 12 12 C 1.53002 * 109.46972 * 69.87526 * 11 10 9 13 13 H 1.09000 * 109.47257 * 55.00230 * 12 11 10 14 14 C 1.47200 * 109.47251 * 294.99929 * 12 11 10 15 15 N 9.40816 * 149.18715 * 292.04047 * 2 1 3 16 16 C 1.53004 * 109.47059 * 175.00276 * 12 11 10 17 17 C 1.50699 * 109.46847 * 184.99953 * 16 12 11 18 18 H 1.08002 * 120.00511 * 0.02562 * 17 16 12 19 19 C 1.37884 * 119.99783 * 179.97438 * 17 16 12 20 20 N 1.31514 * 119.99573 * 180.27665 * 19 17 16 21 21 Si 1.86800 * 119.99781 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46758 * 89.99934 * 21 19 17 23 23 H 1.48499 * 109.47026 * 209.99782 * 21 19 17 24 24 H 1.48496 * 109.47474 * 329.99818 * 21 19 17 25 25 C 1.47841 * 108.56804 * 0.99283 * 10 9 8 26 26 H 1.08998 * 109.46663 * 299.99981 * 1 2 3 27 27 H 1.08993 * 109.46551 * 60.00198 * 1 2 3 28 28 H 1.08996 * 109.46810 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47229 * 60.00327 * 3 2 1 30 30 H 1.08992 * 109.47198 * 299.99533 * 3 2 1 31 31 H 1.09000 * 109.47155 * 304.99990 * 4 3 2 32 32 H 1.09001 * 109.47043 * 184.99833 * 4 3 2 33 33 H 1.08999 * 110.70538 * 87.84270 * 8 6 5 34 34 H 1.08997 * 110.85849 * 324.66767 * 8 6 5 35 35 H 1.09008 * 109.88597 * 262.87623 * 9 8 6 36 36 H 1.08996 * 110.02186 * 141.76934 * 9 8 6 37 37 H 1.08997 * 109.47284 * 309.87846 * 11 10 9 38 38 H 1.09005 * 109.47101 * 189.87445 * 11 10 9 39 39 H 1.08992 * 109.47264 * 65.00127 * 16 12 11 40 40 H 1.09005 * 109.46510 * 304.99713 * 16 12 11 41 41 H 0.97004 * 119.99485 * 179.72881 * 20 19 17 42 42 H 1.08999 * 110.37465 * 94.73236 * 25 10 9 43 43 H 1.09009 * 110.37469 * 217.07471 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3823 0.4196 -1.3220 7 1 5.8244 0.2395 -0.3421 8 6 6.0323 1.6504 -2.0072 9 6 7.3178 1.0641 -2.6279 10 7 7.1054 -0.3866 -2.7835 11 6 7.2921 -0.7990 -4.1811 12 6 8.7727 -0.6909 -4.5513 13 1 9.3672 -1.2695 -3.8443 14 6 9.1888 0.7202 -4.5028 15 7 9.5092 1.8085 -4.4670 16 6 8.9862 -1.2373 -5.9644 17 6 10.4592 -1.2448 -6.2827 18 1 11.1718 -0.8953 -5.5502 19 6 10.8973 -1.6989 -7.5087 20 7 12.1831 -1.7106 -7.7844 21 14 9.6649 -2.3055 -8.7747 22 1 9.2325 -1.1698 -9.6281 23 1 10.2979 -3.3482 -9.6216 24 1 8.4848 -2.8807 -8.0808 25 6 5.7438 -0.7164 -2.3112 26 1 -0.3632 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6887 1.8463 -0.8900 31 1 3.8509 0.5685 0.8427 32 1 3.9785 2.1765 0.0902 33 1 6.2747 2.4175 -1.2718 34 1 5.3795 2.0532 -2.7815 35 1 8.1652 1.2460 -1.9668 36 1 7.5030 1.5183 -3.6012 37 1 6.7064 -0.1506 -4.8326 38 1 6.9615 -1.8306 -4.3027 39 1 8.4629 -0.6050 -6.6814 40 1 8.5965 -2.2536 -6.0236 41 1 12.4916 -2.0337 -8.6454 42 1 5.0446 -0.7283 -3.1473 43 1 5.7422 -1.6793 -1.8002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189700930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:33 Heat of formation + Delta-G solvation = -56.614096 kcal Electronic energy + Delta-G solvation = -21901.371957 eV Core-core repulsion = 18561.249776 eV Total energy + Delta-G solvation = -3340.122181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.72174 -38.45896 -37.36694 -35.88940 -33.98795 -32.37232 -30.90237 -30.04447 -28.48735 -26.73788 -26.43746 -23.52921 -22.93262 -21.65859 -21.03241 -20.65508 -17.61697 -17.01443 -16.90315 -16.72070 -16.28474 -15.90034 -15.40278 -14.85939 -14.73948 -14.36329 -14.02977 -13.63088 -13.47989 -13.07196 -12.96740 -12.67288 -12.62753 -12.52443 -12.20253 -12.08901 -11.85943 -11.57184 -11.38078 -11.36590 -11.08376 -10.97952 -10.81020 -10.63434 -10.27831 -10.06561 -9.96713 -9.78713 -9.64317 -9.31104 -8.60260 -8.31024 -6.09291 -4.09820 3.22217 3.28230 3.36047 3.36383 3.40112 3.55251 3.61011 4.09958 4.39653 4.50304 4.55600 4.67416 4.73209 4.78388 4.89955 4.94647 4.97074 5.03835 5.09261 5.19383 5.25350 5.32436 5.33682 5.39294 5.49905 5.53564 5.65925 5.70900 5.86184 5.93030 5.98468 6.11329 6.20003 6.38088 6.74933 6.87942 6.97184 7.04696 7.07287 7.15907 7.65046 8.35537 8.44027 8.94371 9.50546 11.03804 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029521 B = 0.002950 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.238271 B = 9487.758239 C =10141.616896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.064 3.936 5 O -0.369 6.369 6 C 0.079 3.921 7 H 0.078 0.922 8 C -0.164 4.164 9 C 0.031 3.969 10 N -0.525 5.525 11 C 0.056 3.944 12 C 0.018 3.982 13 H 0.117 0.883 14 C 0.247 3.753 15 N -0.473 5.473 16 C -0.005 4.005 17 C -0.527 4.527 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.262 1.262 25 C 0.049 3.951 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.095 0.905 39 H 0.019 0.981 40 H 0.040 0.960 41 H 0.264 0.736 42 H 0.059 0.941 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.295 3.397 16.290 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.013 4.013 5 O -0.287 6.287 6 C 0.021 3.979 7 H 0.096 0.904 8 C -0.203 4.203 9 C -0.097 4.097 10 N -0.250 5.250 11 C -0.073 4.073 12 C -0.004 4.004 13 H 0.134 0.866 14 C -0.069 4.069 15 N -0.150 5.150 16 C -0.044 4.044 17 C -0.565 4.565 18 H 0.092 0.908 19 C -0.132 4.132 20 N -0.535 5.535 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.186 1.186 25 C -0.078 4.078 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.113 0.887 39 H 0.037 0.963 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.322 4.494 16.349 27.241 hybrid contribution -1.125 0.140 -1.133 1.603 sum -22.447 4.633 15.215 27.511 Atomic orbital electron populations 1.22749 0.81091 1.02915 0.99820 1.87973 1.19566 1.27260 1.95359 1.22569 0.92472 0.85533 1.00820 1.22537 0.93179 0.97712 0.87881 1.87951 1.21453 1.81516 1.37764 1.23259 0.80741 0.94857 0.99083 0.90397 1.23280 0.97777 0.98371 1.00825 1.23104 0.97204 0.87711 1.01675 1.63670 1.25407 1.14913 1.20997 1.22456 0.95698 1.02033 0.87138 1.19081 0.94528 0.84309 1.02490 0.86554 1.28956 0.91911 0.94775 0.91238 1.81012 1.09716 1.13502 1.10779 1.19643 0.98948 0.96665 0.89100 1.21029 0.90181 1.43689 1.01594 0.90773 1.24998 0.95073 0.95004 0.98089 1.69910 1.13625 1.46793 1.23198 0.86813 0.81945 0.78977 0.81783 1.20337 1.21251 1.18642 1.22941 0.89214 0.97991 0.97684 0.94239 0.94021 0.89517 0.91891 0.92402 0.92268 0.91808 0.90929 0.90657 0.90353 0.91190 0.93971 0.88652 0.96309 0.94235 0.92580 0.92279 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.82 10.67 -40.09 -0.43 -4.25 16 3 C 0.06 0.49 6.32 37.16 0.23 0.73 16 4 C 0.06 0.54 6.20 37.16 0.23 0.77 16 5 O -0.37 -4.23 10.12 -40.09 -0.41 -4.64 16 6 C 0.08 0.87 3.48 -24.59 -0.09 0.79 16 7 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 8 C -0.16 -1.89 6.68 -24.91 -0.17 -2.05 16 9 C 0.03 0.43 5.24 -2.84 -0.01 0.42 16 10 N -0.52 -7.15 5.16 -231.25 -1.19 -8.34 16 11 C 0.06 0.81 4.34 -3.82 -0.02 0.79 16 12 C 0.02 0.32 2.42 -93.40 -0.23 0.10 16 13 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 14 C 0.25 5.00 10.66 -20.79 -0.22 4.78 16 15 N -0.47 -10.26 17.68 42.11 0.74 -9.52 16 16 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 17 C -0.53 -14.28 9.15 -34.44 -0.32 -14.60 16 18 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 21 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 25 C 0.05 0.59 6.42 -2.30 -0.01 0.57 16 26 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 36 H 0.07 1.12 4.76 -51.93 -0.25 0.87 16 37 H 0.04 0.61 7.96 -51.93 -0.41 0.20 16 38 H 0.10 1.22 8.07 -51.93 -0.42 0.80 16 39 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 40 H 0.04 0.80 7.20 -51.93 -0.37 0.43 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.06 0.72 7.81 -51.93 -0.41 0.31 16 43 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 LS Contribution 351.78 15.07 5.30 5.30 Total: -1.00 -32.19 351.78 -6.87 -39.05 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -7.31 Total: -2.57 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 0.32 Total: -4.70 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.33 Total: -44.30 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.83 Total: -8.89 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.19 -6.87 -39.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189700930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.562 kcal (2) G-P(sol) polarization free energy of solvation -32.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds