Wall clock time and date at job start Tue Mar 31 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38847 * 120.00121 * 180.02562 * 2 1 3 5 5 N 1.30632 * 126.38501 * 0.02562 * 4 2 1 6 6 O 1.21294 * 110.12350 * 179.97438 * 5 4 2 7 7 C 1.33644 * 109.98312 * 359.97438 * 6 5 4 8 8 C 1.50697 * 126.46579 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47374 * 269.98242 * 8 7 6 10 10 C 1.46902 * 111.00112 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46868 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47298 * 299.99920 * 11 10 9 13 13 C 1.53003 * 109.47229 * 59.99890 * 11 10 9 14 14 C 1.53000 * 109.47105 * 180.02562 * 11 10 9 15 15 C 1.50699 * 109.47452 * 179.97438 * 14 11 10 16 16 H 1.07999 * 119.99981 * 359.97438 * 15 14 11 17 17 C 1.37869 * 119.99999 * 179.97438 * 15 14 11 18 18 N 1.31514 * 120.00204 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99896 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46798 * 90.00185 * 19 17 15 21 21 H 1.48499 * 109.46953 * 209.99836 * 19 17 15 22 22 H 1.48500 * 109.46876 * 330.00370 * 19 17 15 23 23 N 1.31054 * 107.07688 * 359.77278 * 7 6 5 24 24 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 27 27 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 29 29 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 30 30 H 1.09007 * 109.46892 * 29.97887 * 8 7 6 31 31 H 1.08997 * 109.47692 * 149.97988 * 8 7 6 32 32 H 1.00903 * 110.99701 * 56.04266 * 9 8 7 33 33 H 1.08999 * 109.47215 * 299.99910 * 10 9 8 34 34 H 1.09004 * 109.46966 * 59.99783 * 10 9 8 35 35 H 1.09007 * 109.46883 * 60.00073 * 12 11 10 36 36 H 1.08999 * 109.47302 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.47139 * 300.00416 * 12 11 10 38 38 H 1.08999 * 109.46867 * 59.99912 * 13 11 10 39 39 H 1.09000 * 109.47191 * 179.97438 * 13 11 10 40 40 H 1.08991 * 109.47208 * 299.99783 * 13 11 10 41 41 H 1.08999 * 109.47005 * 300.00096 * 14 11 10 42 42 H 1.09004 * 109.46940 * 59.99825 * 14 11 10 43 43 H 0.97003 * 119.99749 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1592 -1.2024 -0.0005 5 7 1.6360 -2.3994 -0.0015 6 8 2.5123 -3.2379 -0.0023 7 6 3.7107 -2.6462 -0.0024 8 6 5.0503 -3.3363 -0.0037 9 7 5.4866 -3.5615 1.3809 10 6 6.7918 -4.2346 1.4187 11 6 7.2121 -4.4508 2.8739 12 6 7.3151 -3.0981 3.5813 13 6 6.1699 -5.3187 3.5821 14 6 8.5718 -5.1512 2.9133 15 6 8.9861 -5.3636 4.3466 16 1 8.3440 -5.0318 5.1491 17 6 10.1847 -5.9815 4.6333 18 7 10.9668 -6.3851 3.6561 19 14 10.6986 -6.2442 6.4100 20 1 10.1929 -7.5582 6.8824 21 1 12.1804 -6.2207 6.5053 22 1 10.1309 -5.1626 7.2545 23 7 3.5011 -1.3526 -0.0066 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5139 27 1 1.4892 2.0973 0.0005 28 1 2.8242 1.3264 0.8899 29 1 2.8241 1.3265 -0.8900 30 1 4.9653 -4.2937 -0.5181 31 1 5.7806 -2.7113 -0.5176 32 1 4.7953 -4.0845 1.8973 33 1 6.7186 -5.1981 0.9143 34 1 7.5343 -3.6160 0.9145 35 1 6.3466 -2.5987 3.5532 36 1 7.6150 -3.2521 4.6179 37 1 8.0575 -2.4797 3.0767 38 1 6.0966 -6.2823 3.0781 39 1 6.4696 -5.4731 4.6187 40 1 5.2016 -4.8193 3.5541 41 1 8.4988 -6.1148 2.4092 42 1 9.3140 -4.5325 2.4088 43 1 11.8100 -6.8202 3.8579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191899746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:40 Heat of formation + Delta-G solvation = 74.370068 kcal Electronic energy + Delta-G solvation = -22085.312318 eV Core-core repulsion = 18783.162788 eV Total energy + Delta-G solvation = -3302.149530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.33783 -37.86406 -37.68710 -35.40538 -34.29333 -32.41536 -31.52402 -28.67588 -27.48302 -26.63120 -26.33502 -26.03619 -24.58316 -23.07069 -22.23297 -21.09840 -18.25688 -18.01842 -17.65428 -16.33092 -16.21418 -15.93876 -15.23549 -15.12279 -14.84416 -14.38422 -14.17976 -13.40026 -13.24366 -12.97183 -12.94156 -12.66199 -12.58477 -12.32936 -12.02944 -11.95472 -11.87982 -11.76982 -11.00014 -10.92616 -10.88107 -10.78469 -10.50352 -10.49418 -10.28305 -10.14507 -9.71039 -9.05815 -8.86346 -8.35748 -8.31760 -8.25111 -5.96534 -3.96527 1.18706 2.29258 2.43520 2.85052 3.33679 3.40510 3.43496 3.81267 4.37241 4.43400 4.51222 4.77441 4.97709 5.02589 5.08672 5.20176 5.30190 5.36612 5.39534 5.46630 5.53961 5.62067 5.68899 5.91784 5.94411 6.16578 6.26889 6.46420 6.58950 6.64505 6.73758 6.82352 6.88144 7.02308 7.18723 7.23430 7.29570 7.44276 7.69130 7.83621 8.03583 8.34403 8.47680 9.08683 9.66440 11.15093 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.037129 B = 0.002800 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.939439 B = 9999.222521 C =10175.702249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.593 5.593 3 C 0.112 3.888 4 C 0.423 3.577 5 N -0.439 5.439 6 O 0.057 5.943 7 C 0.213 3.787 8 C 0.150 3.850 9 N -0.679 5.679 10 C 0.071 3.929 11 C -0.058 4.058 12 C -0.117 4.117 13 C -0.131 4.131 14 C 0.034 3.966 15 C -0.507 4.507 16 H 0.059 0.941 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.887 3.113 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.274 1.274 23 N -0.492 5.492 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.345 0.655 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.041 0.959 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.032 0.968 41 H 0.014 0.986 42 H 0.016 0.984 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.998 11.153 -9.224 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.321 5.321 3 C -0.031 4.031 4 C 0.062 3.938 5 N -0.168 5.168 6 O 0.013 5.987 7 C -0.009 4.009 8 C 0.019 3.981 9 N -0.314 5.314 10 C -0.057 4.057 11 C -0.058 4.058 12 C -0.175 4.175 13 C -0.188 4.188 14 C -0.004 4.004 15 C -0.545 4.545 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.199 1.199 23 N -0.232 5.232 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.165 0.835 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.051 0.949 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.319 12.031 -9.204 23.771 hybrid contribution 0.232 -1.114 0.687 1.329 sum -18.087 10.917 -8.517 22.779 Atomic orbital electron populations 1.21646 0.77163 1.03184 1.01559 1.45038 1.04971 1.00355 1.81734 1.21596 0.96541 0.82592 1.02383 1.22033 0.85861 0.88030 0.97850 1.74786 1.11860 0.97971 1.32191 1.85246 1.12573 1.33290 1.67626 1.28478 0.91371 0.87190 0.93907 1.20418 0.85242 0.98782 0.93696 1.60592 1.06234 1.55055 1.09487 1.22200 0.88376 0.95808 0.99319 1.20642 0.98051 0.96144 0.90970 1.21614 0.99623 0.95629 1.00586 1.21790 0.96547 0.98319 1.02169 1.19130 0.89176 0.94864 0.97209 1.21224 1.03582 1.37347 0.92362 0.92291 1.25007 0.96788 0.96003 0.96774 1.69963 1.11850 1.40812 1.31105 0.86669 0.77650 0.78483 0.85647 1.20833 1.21380 1.19921 1.71864 1.11874 1.15550 1.23954 0.93098 0.90725 0.91049 0.90378 0.92130 0.92332 0.91409 0.86581 0.83541 0.94958 0.90808 0.93949 0.92616 0.94011 0.93876 0.91589 0.94864 0.96768 0.96528 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.83 10.56 59.85 0.63 1.46 16 2 N -0.59 -6.39 3.39 -193.15 -0.65 -7.05 16 3 C 0.11 0.91 10.53 59.85 0.63 1.54 16 4 C 0.42 5.83 8.35 -321.18 -2.68 3.15 16 5 N -0.44 -6.34 11.55 28.63 0.33 -6.01 16 6 O 0.06 0.78 11.29 18.10 0.20 0.98 16 7 C 0.21 2.75 8.01 -12.99 -0.10 2.65 16 8 C 0.15 1.66 6.31 -4.97 -0.03 1.63 16 9 N -0.68 -9.17 5.70 -115.05 -0.66 -9.83 16 10 C 0.07 1.10 4.65 -3.82 -0.02 1.09 16 11 C -0.06 -1.09 0.60 -154.51 -0.09 -1.19 16 12 C -0.12 -2.22 8.06 37.16 0.30 -1.93 16 13 C -0.13 -2.34 7.89 37.16 0.29 -2.05 16 14 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 15 C -0.51 -13.60 7.65 -34.44 -0.26 -13.86 16 16 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 19 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 N -0.49 -7.01 11.25 -12.67 -0.14 -7.15 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.38 7.92 -51.93 -0.41 -0.03 16 26 H 0.07 0.63 7.69 -51.93 -0.40 0.23 16 27 H 0.08 0.39 7.79 -51.93 -0.40 -0.01 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 31 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.34 4.59 6.76 -39.29 -0.27 4.32 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.04 0.74 7.60 -51.92 -0.39 0.34 16 36 H 0.05 1.14 6.61 -51.93 -0.34 0.80 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 40 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 350.56 15.07 5.28 5.28 Total: -1.00 -31.47 350.56 -8.45 -39.92 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.99 Total: -1.47 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -1.55 Total: -5.36 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.39 Total: -55.75 kcal Atomic # 8 Polarization: 0.78 SS G_CDS: 0.20 Total: 0.98 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.47 -8.45 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191899746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.294 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds