Wall clock time and date at job start Tue Mar 31 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38847 * 120.00121 * 180.02562 * 2 1 3 5 5 N 1.30632 * 126.38501 * 0.02562 * 4 2 1 6 6 O 1.21294 * 110.12350 * 179.97438 * 5 4 2 7 7 C 1.33644 * 109.98312 * 359.97438 * 6 5 4 8 8 C 1.50697 * 126.46579 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.47374 * 269.98242 * 8 7 6 10 10 C 1.46902 * 111.00112 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46868 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47298 * 299.99920 * 11 10 9 13 13 C 1.53003 * 109.47229 * 59.99890 * 11 10 9 14 14 C 1.53000 * 109.47105 * 180.02562 * 11 10 9 15 15 C 1.50699 * 109.47452 * 179.97438 * 14 11 10 16 16 H 1.07999 * 119.99981 * 359.97438 * 15 14 11 17 17 C 1.37869 * 119.99999 * 179.97438 * 15 14 11 18 18 N 1.31514 * 120.00204 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99896 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46798 * 90.00185 * 19 17 15 21 21 H 1.48499 * 109.46953 * 209.99836 * 19 17 15 22 22 H 1.48500 * 109.46876 * 330.00370 * 19 17 15 23 23 N 1.31054 * 107.07688 * 359.77278 * 7 6 5 24 24 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 25 25 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 26 26 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 27 27 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 29 29 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 30 30 H 1.09007 * 109.46892 * 29.97887 * 8 7 6 31 31 H 1.08997 * 109.47692 * 149.97988 * 8 7 6 32 32 H 1.00903 * 110.99701 * 56.04266 * 9 8 7 33 33 H 1.08999 * 109.47215 * 299.99910 * 10 9 8 34 34 H 1.09004 * 109.46966 * 59.99783 * 10 9 8 35 35 H 1.09007 * 109.46883 * 60.00073 * 12 11 10 36 36 H 1.08999 * 109.47302 * 180.02562 * 12 11 10 37 37 H 1.09004 * 109.47139 * 300.00416 * 12 11 10 38 38 H 1.08999 * 109.46867 * 59.99912 * 13 11 10 39 39 H 1.09000 * 109.47191 * 179.97438 * 13 11 10 40 40 H 1.08991 * 109.47208 * 299.99783 * 13 11 10 41 41 H 1.08999 * 109.47005 * 300.00096 * 14 11 10 42 42 H 1.09004 * 109.46940 * 59.99825 * 14 11 10 43 43 H 0.97003 * 119.99749 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1592 -1.2024 -0.0005 5 7 1.6360 -2.3994 -0.0015 6 8 2.5123 -3.2379 -0.0023 7 6 3.7107 -2.6462 -0.0024 8 6 5.0503 -3.3363 -0.0037 9 7 5.4866 -3.5615 1.3809 10 6 6.7918 -4.2346 1.4187 11 6 7.2121 -4.4508 2.8739 12 6 7.3151 -3.0981 3.5813 13 6 6.1699 -5.3187 3.5821 14 6 8.5718 -5.1512 2.9133 15 6 8.9861 -5.3636 4.3466 16 1 8.3440 -5.0318 5.1491 17 6 10.1847 -5.9815 4.6333 18 7 10.9668 -6.3851 3.6561 19 14 10.6986 -6.2442 6.4100 20 1 10.1929 -7.5582 6.8824 21 1 12.1804 -6.2207 6.5053 22 1 10.1309 -5.1626 7.2545 23 7 3.5011 -1.3526 -0.0066 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3633 -0.8900 0.5139 27 1 1.4892 2.0973 0.0005 28 1 2.8242 1.3264 0.8899 29 1 2.8241 1.3265 -0.8900 30 1 4.9653 -4.2937 -0.5181 31 1 5.7806 -2.7113 -0.5176 32 1 4.7953 -4.0845 1.8973 33 1 6.7186 -5.1981 0.9143 34 1 7.5343 -3.6160 0.9145 35 1 6.3466 -2.5987 3.5532 36 1 7.6150 -3.2521 4.6179 37 1 8.0575 -2.4797 3.0767 38 1 6.0966 -6.2823 3.0781 39 1 6.4696 -5.4731 4.6187 40 1 5.2016 -4.8193 3.5541 41 1 8.4988 -6.1148 2.4092 42 1 9.3140 -4.5325 2.4088 43 1 11.8100 -6.8202 3.8579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191899746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:40 Heat of formation + Delta-G solvation = 54.309191 kcal Electronic energy + Delta-G solvation = -22086.182223 eV Core-core repulsion = 18783.162788 eV Total energy + Delta-G solvation = -3303.019435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.180 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.33414 -39.25600 -38.51034 -36.58894 -35.44641 -34.26434 -32.68279 -29.51415 -28.99376 -27.99015 -27.85806 -26.83976 -26.07528 -24.21159 -23.75568 -22.00389 -19.65701 -19.04752 -18.70199 -18.28603 -17.20775 -17.07553 -16.57654 -16.01117 -15.91955 -15.67562 -15.45300 -14.79683 -14.60979 -14.17716 -14.01924 -13.84120 -13.55702 -13.45847 -13.32260 -12.96109 -12.90399 -12.83986 -12.76793 -12.67911 -12.38911 -12.20431 -12.13040 -11.92823 -11.88205 -11.45559 -11.33720 -10.82922 -10.73329 -10.46408 -9.42817 -9.09450 -8.10930 -6.16680 0.19107 1.42494 1.42903 1.43434 1.51981 1.53408 1.89057 2.46235 2.88551 3.23486 3.32503 3.62754 4.05570 4.15501 4.22329 4.32191 4.36811 4.41866 4.44181 4.48160 4.65180 4.68458 4.79238 4.81286 4.83551 4.87095 4.97634 5.00171 5.11492 5.24456 5.25973 5.56795 5.59138 5.62983 5.66356 5.87543 5.89252 5.92502 5.98053 6.03921 6.33176 6.41057 6.98587 7.36806 7.50269 9.01116 Molecular weight = 282.18amu Principal moments of inertia in cm(-1) A = 0.037129 B = 0.002800 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.939439 B = 9999.222521 C =10175.702249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.595 5.595 3 C 0.109 3.891 4 C 0.411 3.589 5 N -0.459 5.459 6 O 0.051 5.949 7 C 0.218 3.782 8 C 0.153 3.847 9 N -0.683 5.683 10 C 0.084 3.916 11 C -0.055 4.055 12 C -0.108 4.108 13 C -0.125 4.125 14 C 0.039 3.961 15 C -0.513 4.513 16 H 0.063 0.937 17 C -0.003 4.003 18 N -0.936 5.936 19 Si 0.951 3.049 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 N -0.512 5.512 24 H 0.059 0.941 25 H 0.105 0.895 26 H 0.057 0.943 27 H 0.114 0.886 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.095 0.905 31 H 0.125 0.875 32 H 0.348 0.652 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.062 0.938 41 H -0.009 1.009 42 H -0.011 1.011 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.579 12.170 -9.063 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.324 5.324 3 C -0.033 4.033 4 C 0.051 3.949 5 N -0.191 5.191 6 O 0.009 5.991 7 C -0.004 4.004 8 C 0.023 3.977 9 N -0.318 5.318 10 C -0.044 4.044 11 C -0.055 4.055 12 C -0.165 4.165 13 C -0.182 4.182 14 C 0.002 3.998 15 C -0.551 4.551 16 H 0.081 0.919 17 C -0.199 4.199 18 N -0.577 5.577 19 Si 0.777 3.223 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 N -0.253 5.253 24 H 0.078 0.922 25 H 0.124 0.876 26 H 0.075 0.925 27 H 0.132 0.868 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.143 0.857 32 H 0.168 0.832 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.009 0.991 42 H 0.007 0.993 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.923 13.064 -9.041 25.482 hybrid contribution 0.680 -1.369 0.596 1.641 sum -19.242 11.694 -8.444 24.048 Atomic orbital electron populations 1.21837 0.75580 1.04029 1.02395 1.45531 1.06131 1.00031 1.80658 1.21747 0.97336 0.82618 1.01569 1.22450 0.86000 0.88966 0.97488 1.74758 1.12309 0.98347 1.33664 1.85212 1.12730 1.33290 1.67902 1.28732 0.91622 0.87024 0.93009 1.20526 0.84511 1.00140 0.92501 1.60451 1.05366 1.54693 1.11254 1.21886 0.89494 0.96443 0.96601 1.20493 0.95526 0.95726 0.93766 1.21512 1.00322 0.95574 0.99119 1.21707 0.97463 0.98513 1.00528 1.19010 0.91688 0.93710 0.95408 1.21623 1.03445 1.36309 0.93714 0.91902 1.25852 0.97131 0.96110 1.00848 1.70091 1.12345 1.42067 1.33231 0.85649 0.77109 0.78694 0.80817 1.20164 1.21332 1.18986 1.71865 1.12366 1.16271 1.24846 0.92221 0.87608 0.92461 0.86804 0.93213 0.92835 0.88720 0.85677 0.83229 0.94262 0.91006 0.92033 0.94580 0.94744 0.93761 0.93705 0.91906 0.99097 0.99259 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.39 10.56 127.77 1.35 2.74 16 2 N -0.59 -11.87 3.39 -767.80 -2.60 -14.47 16 3 C 0.11 1.57 10.53 127.77 1.35 2.92 16 4 C 0.41 10.94 8.35 260.92 2.18 13.12 16 5 N -0.46 -12.88 11.55 -66.69 -0.77 -13.65 16 6 O 0.05 1.33 11.29 74.83 0.85 2.18 16 7 C 0.22 5.31 8.01 88.36 0.71 6.02 16 8 C 0.15 3.06 6.31 85.55 0.54 3.60 16 9 N -0.68 -16.92 5.70 -517.92 -2.95 -19.88 16 10 C 0.08 2.50 4.65 86.30 0.40 2.90 16 11 C -0.05 -2.04 0.60 -52.18 -0.03 -2.08 16 12 C -0.11 -4.01 8.06 71.98 0.58 -3.43 16 13 C -0.12 -4.30 7.89 71.98 0.57 -3.73 16 14 C 0.04 1.95 4.04 29.85 0.12 2.07 16 15 C -0.51 -27.81 7.65 25.60 0.20 -27.61 16 16 H 0.06 3.30 5.68 -2.91 -0.02 3.29 16 17 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 18 N -0.94 -56.26 13.29 21.44 0.28 -55.97 16 19 Si 0.95 44.14 29.54 68.60 2.03 46.17 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 N -0.51 -14.01 11.25 -311.43 -3.50 -17.51 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.11 0.74 7.92 -2.39 -0.02 0.73 16 26 H 0.06 0.95 7.69 -2.38 -0.02 0.93 16 27 H 0.11 0.79 7.79 -2.39 -0.02 0.77 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.35 8.34 6.76 -89.69 -0.61 7.74 16 33 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 2.04 7.60 -2.38 -0.02 2.02 16 36 H 0.04 1.45 6.61 -2.39 -0.02 1.44 16 37 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.04 1.72 6.62 -2.39 -0.02 1.70 16 40 H 0.06 1.78 6.57 -2.39 -0.02 1.77 16 41 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -68.52 350.56 2.14 -66.38 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.39 Total: 9.91 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 8.42 Total: -3.16 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -9.54 Total: -121.47 kcal Atomic # 8 Polarization: 1.33 SS G_CDS: 0.85 Total: 2.18 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -68.52 2.14 -66.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191899746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.692 kcal (2) G-P(sol) polarization free energy of solvation -68.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds