Wall clock time and date at job start Tue Mar 31 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 119.99991 * 2 1 4 4 N 1.34779 * 119.99984 * 180.02562 * 2 1 3 5 5 C 1.46496 * 119.99760 * 184.63862 * 4 2 1 6 6 H 1.08999 * 109.47561 * 340.99229 * 5 4 2 7 7 C 1.50695 * 109.47091 * 220.98468 * 5 4 2 8 8 O 1.21279 * 120.00235 * 0.02562 * 7 5 4 9 9 N 1.34782 * 119.99947 * 180.02562 * 7 5 4 10 10 C 1.46499 * 119.99903 * 0.02562 * 9 7 5 11 11 C 1.46501 * 120.00011 * 180.02562 * 9 7 5 12 12 C 1.50704 * 109.47193 * 89.99820 * 11 9 7 13 13 H 1.08000 * 119.99968 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99885 * 179.97438 * 12 11 9 15 15 N 1.31519 * 119.99565 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00199 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47078 * 89.99675 * 16 14 12 18 18 H 1.48495 * 109.47194 * 209.99546 * 16 14 12 19 19 H 1.48499 * 109.47324 * 329.99909 * 16 14 12 20 20 C 1.53008 * 109.46851 * 100.98777 * 5 4 2 21 21 C 1.54268 * 110.02921 * 52.02804 * 20 5 4 22 22 C 1.54888 * 104.19377 * 217.10630 * 21 20 5 23 23 C 1.54892 * 102.74964 * 37.94162 * 22 21 20 24 24 C 1.53870 * 110.03171 * 294.86142 * 20 5 4 25 25 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47314 * 299.99910 * 1 2 3 27 27 H 1.09007 * 109.47095 * 60.00172 * 1 2 3 28 28 H 0.96998 * 119.99638 * 4.36685 * 4 2 1 29 29 H 1.08992 * 109.47214 * 89.99958 * 10 9 7 30 30 H 1.09006 * 109.46779 * 209.99920 * 10 9 7 31 31 H 1.09002 * 109.47163 * 329.99765 * 10 9 7 32 32 H 1.09000 * 109.47130 * 209.99865 * 11 9 7 33 33 H 1.09002 * 109.46810 * 330.00095 * 11 9 7 34 34 H 0.96999 * 119.99485 * 180.02562 * 15 14 12 35 35 H 1.08995 * 110.01511 * 173.46556 * 20 5 4 36 36 H 1.09002 * 110.49006 * 335.78043 * 21 20 5 37 37 H 1.09001 * 110.48793 * 98.42644 * 21 20 5 38 38 H 1.09002 * 110.75889 * 279.62854 * 22 21 20 39 39 H 1.09000 * 110.91868 * 156.33251 * 22 21 20 40 40 H 1.09001 * 110.48421 * 203.37614 * 23 22 21 41 41 H 1.08994 * 110.59625 * 80.79483 * 23 22 21 42 42 H 1.08999 * 110.03293 * 238.56795 * 24 20 5 43 43 H 1.09002 * 110.03279 * 0.02562 * 24 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6423 -1.1693 0.1021 6 1 4.0268 -0.1853 -0.1663 7 6 4.2102 -2.2035 -0.8353 8 8 3.4674 -2.8727 -1.5219 9 7 5.5436 -2.3849 -0.9107 10 6 6.4408 -1.5770 -0.0810 11 6 6.0957 -3.3900 -1.8225 12 6 6.3594 -2.7591 -3.1655 13 1 6.1383 -1.7139 -3.3238 14 6 6.8840 -3.5160 -4.1916 15 7 7.1146 -2.9652 -5.3634 16 14 7.2672 -5.3235 -3.9174 17 1 6.0740 -6.1396 -4.2579 18 1 8.4049 -5.7251 -4.7830 19 1 7.6269 -5.5429 -2.4935 20 6 4.0522 -1.5026 1.5380 21 6 3.3516 -2.7969 2.0006 22 6 3.0226 -2.5385 3.4919 23 6 2.6223 -1.0422 3.4994 24 6 3.5885 -0.3871 2.4910 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 1.6980 -2.0060 -0.0649 29 1 6.6095 -2.0822 0.8700 30 1 7.3923 -1.4455 -0.5964 31 1 5.9882 -0.6022 0.1007 32 1 7.0288 -3.7778 -1.4137 33 1 5.3826 -4.2062 -1.9383 34 1 7.4833 -3.4978 -6.0854 35 1 5.1340 -1.6205 1.5994 36 1 2.4367 -2.9600 1.4310 37 1 4.0219 -3.6504 1.9001 38 1 3.9004 -2.7066 4.1159 39 1 2.1916 -3.1624 3.8209 40 1 2.7605 -0.6153 4.4928 41 1 1.5896 -0.9200 3.1731 42 1 4.4452 0.0360 3.0155 43 1 3.0711 0.3916 1.9306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247901952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:01 Heat of formation + Delta-G solvation = -74.901081 kcal Electronic energy + Delta-G solvation = -23735.672941 eV Core-core repulsion = 20394.757777 eV Total energy + Delta-G solvation = -3340.915164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.64527 -38.74004 -37.64766 -35.15344 -34.11673 -32.61762 -31.13362 -29.16551 -28.75945 -28.17321 -26.38414 -25.04897 -22.26007 -21.23754 -20.30103 -19.55783 -18.92629 -17.13161 -16.96179 -16.44746 -16.35529 -15.54335 -15.31579 -14.93496 -14.67245 -14.30344 -13.97717 -13.56034 -13.30101 -13.20827 -12.73872 -12.63326 -12.39834 -12.35676 -12.18710 -11.99425 -11.57805 -11.31310 -11.13204 -11.09606 -11.03970 -10.87330 -10.67461 -10.57146 -10.40833 -10.17119 -9.85122 -9.57694 -9.35298 -8.74985 -8.61061 -7.77802 -6.10300 -4.09635 2.66521 3.14336 3.22261 3.27201 3.33125 3.34495 3.87031 4.37245 4.49003 4.55935 4.65511 4.83029 4.95423 5.12731 5.20267 5.23730 5.32632 5.34775 5.41487 5.49268 5.56885 5.59793 5.63556 5.70792 5.75537 5.79043 5.85840 5.90972 6.02852 6.14046 6.19621 6.24543 6.35042 6.46304 6.65578 6.88344 7.24756 7.57652 7.58255 8.11969 8.29116 8.43889 8.82707 8.94181 9.49170 11.03134 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.005090 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.101322 B = 5500.116030 C = 6083.672080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.515 3.485 3 O -0.552 6.552 4 N -0.700 5.700 5 C 0.127 3.873 6 H 0.119 0.881 7 C 0.505 3.495 8 O -0.537 6.537 9 N -0.591 5.591 10 C 0.077 3.923 11 C 0.216 3.784 12 C -0.531 4.531 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.877 3.123 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.125 4.125 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.407 0.593 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.031 0.969 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.240 2.345 18.922 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.302 3.698 3 O -0.430 6.430 4 N -0.353 5.353 5 C 0.018 3.982 6 H 0.136 0.864 7 C 0.290 3.710 8 O -0.415 6.415 9 N -0.323 5.323 10 C -0.066 4.066 11 C 0.096 3.904 12 C -0.569 4.569 13 H 0.092 0.908 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.130 4.130 21 C -0.157 4.157 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.163 4.163 25 H 0.095 0.905 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.244 0.756 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.111 2.688 18.361 20.673 hybrid contribution 0.156 -1.282 -0.209 1.309 sum -8.956 1.406 18.152 20.290 Atomic orbital electron populations 1.21825 0.91738 1.04253 1.05097 1.20750 0.90584 0.83411 0.75033 1.90697 1.70561 1.31362 1.50386 1.45757 1.06310 1.09332 1.73909 1.20925 0.81839 1.00901 0.94528 0.86385 1.20377 0.82952 0.84365 0.83282 1.90657 1.58272 1.47992 1.44550 1.47755 1.04839 1.38503 1.41153 1.21879 0.95865 0.94585 0.94320 1.19689 0.93748 0.87784 0.89201 1.21327 1.42621 0.98884 0.94065 0.90766 1.24864 0.94979 0.98307 0.94851 1.69905 1.44468 1.36554 1.02544 0.86840 0.78425 0.85780 0.78555 1.19934 1.21036 1.19072 1.22451 1.02009 0.95862 0.92701 1.22392 1.00596 0.96875 0.95807 1.22464 1.00839 0.96178 0.96429 1.22305 0.99199 0.95448 0.98778 1.22282 0.99285 0.97934 0.96766 0.90547 0.88880 0.88724 0.75636 0.93052 0.90313 0.91804 0.95070 0.94521 0.92533 0.88425 0.91422 0.91543 0.91617 0.91855 0.92080 0.92096 0.91812 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.39 36.01 0.37 -1.15 16 2 C 0.51 7.00 7.08 -10.98 -0.08 6.92 16 3 O -0.55 -9.49 15.12 5.56 0.08 -9.40 16 4 N -0.70 -9.66 3.83 -54.93 -0.21 -9.87 16 5 C 0.13 1.95 1.47 -69.08 -0.10 1.85 16 6 H 0.12 1.98 6.35 -51.93 -0.33 1.65 16 7 C 0.50 9.99 6.71 -10.99 -0.07 9.92 16 8 O -0.54 -12.59 15.68 5.56 0.09 -12.50 16 9 N -0.59 -11.89 2.86 -182.95 -0.52 -12.41 16 10 C 0.08 1.17 8.81 59.85 0.53 1.70 16 11 C 0.22 5.21 4.23 -5.19 -0.02 5.19 16 12 C -0.53 -15.26 9.94 -34.44 -0.34 -15.61 16 13 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 14 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 15 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 16 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.07 6.54 56.52 0.37 -5.71 16 20 C -0.11 -1.34 2.39 -89.50 -0.21 -1.55 16 21 C -0.12 -1.35 5.81 -25.07 -0.15 -1.49 16 22 C -0.12 -1.12 6.91 -24.74 -0.17 -1.29 16 23 C -0.12 -1.12 6.83 -25.07 -0.17 -1.29 16 24 C -0.13 -1.37 6.22 -25.62 -0.16 -1.53 16 25 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 26 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.41 5.17 6.92 -40.82 -0.28 4.89 16 29 H 0.05 0.63 6.83 -51.93 -0.35 0.27 16 30 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 31 H 0.06 0.86 6.07 -51.93 -0.32 0.54 16 32 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.10 1.14 4.49 -51.93 -0.23 0.90 16 36 H 0.07 0.79 6.14 -51.93 -0.32 0.47 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.02 5.23 -51.93 -0.27 0.75 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -35.10 335.45 -6.71 -41.81 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.63 Total: 3.88 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -0.67 Total: 3.67 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.04 Total: -49.27 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.17 Total: -21.91 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.10 -6.71 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247901952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.093 kcal (2) G-P(sol) polarization free energy of solvation -35.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds