Wall clock time and date at job start Tue Mar 31 2020 05:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 119.99991 * 2 1 4 4 N 1.34779 * 119.99984 * 180.02562 * 2 1 3 5 5 C 1.46496 * 119.99760 * 184.63862 * 4 2 1 6 6 H 1.08999 * 109.47561 * 340.99229 * 5 4 2 7 7 C 1.50695 * 109.47091 * 220.98468 * 5 4 2 8 8 O 1.21279 * 120.00235 * 0.02562 * 7 5 4 9 9 N 1.34782 * 119.99947 * 180.02562 * 7 5 4 10 10 C 1.46499 * 119.99903 * 0.02562 * 9 7 5 11 11 C 1.46501 * 120.00011 * 180.02562 * 9 7 5 12 12 C 1.50704 * 109.47193 * 89.99820 * 11 9 7 13 13 H 1.08000 * 119.99968 * 0.02562 * 12 11 9 14 14 C 1.37876 * 119.99885 * 179.97438 * 12 11 9 15 15 N 1.31519 * 119.99565 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00199 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47078 * 89.99675 * 16 14 12 18 18 H 1.48495 * 109.47194 * 209.99546 * 16 14 12 19 19 H 1.48499 * 109.47324 * 329.99909 * 16 14 12 20 20 C 1.53008 * 109.46851 * 100.98777 * 5 4 2 21 21 C 1.54268 * 110.02921 * 52.02804 * 20 5 4 22 22 C 1.54888 * 104.19377 * 217.10630 * 21 20 5 23 23 C 1.54892 * 102.74964 * 37.94162 * 22 21 20 24 24 C 1.53870 * 110.03171 * 294.86142 * 20 5 4 25 25 H 1.09003 * 109.47201 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47314 * 299.99910 * 1 2 3 27 27 H 1.09007 * 109.47095 * 60.00172 * 1 2 3 28 28 H 0.96998 * 119.99638 * 4.36685 * 4 2 1 29 29 H 1.08992 * 109.47214 * 89.99958 * 10 9 7 30 30 H 1.09006 * 109.46779 * 209.99920 * 10 9 7 31 31 H 1.09002 * 109.47163 * 329.99765 * 10 9 7 32 32 H 1.09000 * 109.47130 * 209.99865 * 11 9 7 33 33 H 1.09002 * 109.46810 * 330.00095 * 11 9 7 34 34 H 0.96999 * 119.99485 * 180.02562 * 15 14 12 35 35 H 1.08995 * 110.01511 * 173.46556 * 20 5 4 36 36 H 1.09002 * 110.49006 * 335.78043 * 21 20 5 37 37 H 1.09001 * 110.48793 * 98.42644 * 21 20 5 38 38 H 1.09002 * 110.75889 * 279.62854 * 22 21 20 39 39 H 1.09000 * 110.91868 * 156.33251 * 22 21 20 40 40 H 1.09001 * 110.48421 * 203.37614 * 23 22 21 41 41 H 1.08994 * 110.59625 * 80.79483 * 23 22 21 42 42 H 1.08999 * 110.03293 * 238.56795 * 24 20 5 43 43 H 1.09002 * 110.03279 * 0.02562 * 24 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6423 -1.1693 0.1021 6 1 4.0268 -0.1853 -0.1663 7 6 4.2102 -2.2035 -0.8353 8 8 3.4674 -2.8727 -1.5219 9 7 5.5436 -2.3849 -0.9107 10 6 6.4408 -1.5770 -0.0810 11 6 6.0957 -3.3900 -1.8225 12 6 6.3594 -2.7591 -3.1655 13 1 6.1383 -1.7139 -3.3238 14 6 6.8840 -3.5160 -4.1916 15 7 7.1146 -2.9652 -5.3634 16 14 7.2672 -5.3235 -3.9174 17 1 6.0740 -6.1396 -4.2579 18 1 8.4049 -5.7251 -4.7830 19 1 7.6269 -5.5429 -2.4935 20 6 4.0522 -1.5026 1.5380 21 6 3.3516 -2.7969 2.0006 22 6 3.0226 -2.5385 3.4919 23 6 2.6223 -1.0422 3.4994 24 6 3.5885 -0.3871 2.4910 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 1.6980 -2.0060 -0.0649 29 1 6.6095 -2.0822 0.8700 30 1 7.3923 -1.4455 -0.5964 31 1 5.9882 -0.6022 0.1007 32 1 7.0288 -3.7778 -1.4137 33 1 5.3826 -4.2062 -1.9383 34 1 7.4833 -3.4978 -6.0854 35 1 5.1340 -1.6205 1.5994 36 1 2.4367 -2.9600 1.4310 37 1 4.0219 -3.6504 1.9001 38 1 3.9004 -2.7066 4.1159 39 1 2.1916 -3.1624 3.8209 40 1 2.7605 -0.6153 4.4928 41 1 1.5896 -0.9200 3.1731 42 1 4.4452 0.0360 3.0155 43 1 3.0711 0.3916 1.9306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247901952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:00 Heat of formation + Delta-G solvation = -99.904151 kcal Electronic energy + Delta-G solvation = -23736.757156 eV Core-core repulsion = 20394.757777 eV Total energy + Delta-G solvation = -3341.999379 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.89217 -40.10378 -38.69520 -36.80951 -35.29636 -34.73738 -32.29963 -30.54870 -29.60138 -29.45300 -27.74536 -26.43708 -24.09489 -22.19362 -21.19912 -20.65376 -20.36118 -19.15703 -18.36382 -17.76133 -17.50029 -16.79685 -16.63521 -16.41293 -16.00216 -15.69342 -15.14659 -14.80258 -14.66023 -14.35116 -14.14802 -14.01627 -13.71842 -13.64290 -13.28878 -13.26377 -12.98553 -12.81578 -12.46771 -12.29524 -12.09311 -12.03686 -11.89033 -11.83661 -11.77057 -11.43397 -11.32972 -10.98688 -10.85482 -10.80237 -10.05635 -9.45839 -8.35662 -6.42018 1.32500 1.36647 1.45434 1.54829 1.68762 1.96037 2.30013 2.50121 2.98730 3.39319 3.62641 3.71922 3.87729 3.89003 4.19694 4.33726 4.38159 4.49184 4.52418 4.59147 4.62528 4.66035 4.69102 4.76940 4.83634 4.86203 4.90925 4.93332 4.99921 5.06777 5.13282 5.28215 5.31720 5.36423 5.42701 5.47076 5.51625 5.54327 6.19923 6.51134 6.56639 6.60077 7.15134 7.20499 7.29838 8.81721 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021141 B = 0.005090 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.101322 B = 5500.116030 C = 6083.672080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.509 3.491 3 O -0.592 6.592 4 N -0.699 5.699 5 C 0.139 3.861 6 H 0.101 0.899 7 C 0.498 3.502 8 O -0.582 6.582 9 N -0.599 5.599 10 C 0.071 3.929 11 C 0.225 3.775 12 C -0.540 4.540 13 H 0.022 0.978 14 C 0.010 3.990 15 N -0.947 5.947 16 Si 0.953 3.047 17 H -0.275 1.275 18 H -0.276 1.276 19 H -0.234 1.234 20 C -0.105 4.105 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.116 4.116 24 C -0.122 4.122 25 H 0.099 0.901 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.413 0.587 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.024 0.976 34 H 0.269 0.731 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.573 0.975 21.943 23.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.298 3.702 3 O -0.474 6.474 4 N -0.352 5.352 5 C 0.030 3.970 6 H 0.119 0.881 7 C 0.285 3.715 8 O -0.462 6.462 9 N -0.330 5.330 10 C -0.071 4.071 11 C 0.103 3.897 12 C -0.579 4.579 13 H 0.040 0.960 14 C -0.188 4.188 15 N -0.587 5.587 16 Si 0.775 3.225 17 H -0.200 1.200 18 H -0.201 1.201 19 H -0.157 1.157 20 C -0.124 4.124 21 C -0.159 4.159 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.159 4.159 25 H 0.118 0.882 26 H 0.132 0.868 27 H 0.117 0.883 28 H 0.251 0.749 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.442 1.338 21.431 23.457 hybrid contribution 0.236 -0.735 -1.217 1.441 sum -9.206 0.603 20.214 22.220 Atomic orbital electron populations 1.21874 0.87809 1.06203 1.06232 1.21618 0.92411 0.82452 0.73682 1.90677 1.71792 1.32653 1.52244 1.45837 1.05667 1.09934 1.73734 1.20788 0.82756 0.98021 0.95458 0.88094 1.21200 0.82611 0.84489 0.83194 1.90618 1.59305 1.49903 1.46417 1.47837 1.05801 1.38388 1.40939 1.22172 0.94607 0.95249 0.95032 1.19380 0.94429 0.88120 0.87794 1.21566 1.42551 0.96843 0.96928 0.95977 1.25916 0.94575 1.04125 0.94219 1.70071 1.45819 1.38973 1.03869 0.85649 0.78223 0.78271 0.80388 1.20038 1.20117 1.15668 1.22452 1.02532 0.96977 0.90429 1.22405 1.00045 0.95928 0.97495 1.22427 1.01744 0.96122 0.94700 1.22293 0.98682 0.95399 0.98931 1.22236 1.00050 0.96938 0.96689 0.88241 0.86811 0.88321 0.74947 0.89040 0.91104 0.90334 0.92663 0.95790 0.92236 0.87695 0.92048 0.92233 0.90617 0.90632 0.90549 0.92068 0.90528 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 10.39 71.24 0.74 -1.88 16 2 C 0.51 13.63 7.08 87.66 0.62 14.25 16 3 O -0.59 -20.64 15.12 -3.02 -0.05 -20.68 16 4 N -0.70 -19.14 3.83 -446.10 -1.71 -20.85 16 5 C 0.14 4.27 1.47 44.25 0.06 4.33 16 6 H 0.10 3.48 6.35 -2.39 -0.02 3.46 16 7 C 0.50 19.98 6.71 87.65 0.59 20.57 16 8 O -0.58 -28.00 15.68 -3.03 -0.05 -28.04 16 9 N -0.60 -24.08 2.86 -851.12 -2.43 -26.51 16 10 C 0.07 2.07 8.81 127.77 1.13 3.20 16 11 C 0.22 10.80 4.23 85.63 0.36 11.16 16 12 C -0.54 -32.12 9.94 25.60 0.25 -31.86 16 13 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 14 C 0.01 0.56 5.47 84.65 0.46 1.03 16 15 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 16 Si 0.95 44.06 27.47 68.60 1.88 45.95 16 17 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.23 -9.53 6.54 99.48 0.65 -8.88 16 20 C -0.10 -2.36 2.39 -10.07 -0.02 -2.38 16 21 C -0.12 -2.49 5.81 31.67 0.18 -2.31 16 22 C -0.11 -1.70 6.91 31.89 0.22 -1.48 16 23 C -0.12 -1.81 6.83 31.67 0.22 -1.59 16 24 C -0.12 -2.42 6.22 31.32 0.19 -2.23 16 25 H 0.10 1.14 7.92 -2.39 -0.02 1.13 16 26 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.41 10.34 6.92 -92.71 -0.64 9.70 16 29 H 0.09 1.95 6.83 -2.39 -0.02 1.94 16 30 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 31 H 0.08 2.05 6.07 -2.39 -0.01 2.03 16 32 H 0.06 2.39 7.13 -2.39 -0.02 2.38 16 33 H 0.02 1.22 6.85 -2.39 -0.02 1.20 16 34 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 35 H 0.11 2.18 4.49 -2.39 -0.01 2.17 16 36 H 0.06 1.34 6.14 -2.39 -0.01 1.32 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.06 1.43 5.23 -2.39 -0.01 1.41 16 Total: -1.00 -80.45 335.45 3.28 -77.17 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.32 Total: 22.47 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 5.01 Total: 10.81 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -3.84 Total: -107.67 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -0.09 Total: -48.73 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Total: -80.45 3.28 -77.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247901952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.732 kcal (2) G-P(sol) polarization free energy of solvation -80.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds