Wall clock time and date at job start Tue Mar 31 2020 05:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 119.99968 * 2 1 4 4 O 1.21276 * 120.00430 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99828 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47169 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47281 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.47204 * 180.02562 * 7 6 5 9 9 O 1.21294 * 120.00111 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99992 * 180.02562 * 8 7 6 11 11 C 1.37092 * 119.99912 * 180.27456 * 10 8 7 12 12 H 1.08003 * 119.99727 * 222.78762 * 11 10 8 13 13 C 1.38953 * 120.00098 * 42.78926 * 11 10 8 14 14 N 1.31406 * 119.99855 * 19.09529 * 13 11 10 15 15 Si 1.86805 * 119.99804 * 199.09467 * 13 11 10 16 16 H 1.48498 * 109.47059 * 59.99796 * 15 13 11 17 17 H 1.48498 * 109.46747 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47164 * 299.99900 * 15 13 11 19 19 C 1.46497 * 120.00043 * 359.97438 * 10 8 7 20 20 C 1.54269 * 110.03443 * 239.87248 * 19 10 8 21 21 C 1.54959 * 104.16271 * 217.13320 * 20 19 10 22 22 C 1.54890 * 102.77553 * 37.88923 * 21 20 19 23 23 C 1.53874 * 110.03529 * 122.65169 * 19 10 8 24 24 H 1.09008 * 109.46890 * 60.00121 * 1 2 3 25 25 H 1.08996 * 109.47570 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47351 * 300.00302 * 1 2 3 27 27 H 0.97002 * 119.99759 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47238 * 59.99900 * 5 3 2 29 29 H 1.09007 * 109.47500 * 299.99588 * 5 3 2 30 30 H 1.09000 * 109.47011 * 59.99897 * 6 5 3 31 31 H 1.08994 * 109.47255 * 300.00166 * 6 5 3 32 32 H 1.09003 * 109.46670 * 59.99734 * 7 6 5 33 33 H 1.09000 * 109.46945 * 300.00017 * 7 6 5 34 34 H 0.97001 * 119.99613 * 174.74084 * 14 13 11 35 35 H 1.09006 * 110.01944 * 1.26139 * 19 10 8 36 36 H 1.08999 * 110.48342 * 335.78880 * 20 19 10 37 37 H 1.09006 * 110.48397 * 98.42653 * 20 19 10 38 38 H 1.08996 * 110.72047 * 279.57752 * 21 20 19 39 39 H 1.09002 * 110.92489 * 156.28921 * 21 20 19 40 40 H 1.09001 * 110.48895 * 203.40644 * 22 21 20 41 41 H 1.08999 * 110.60414 * 80.81750 * 22 21 20 42 42 H 1.08995 * 110.03602 * 238.57141 * 23 19 10 43 43 H 1.09003 * 110.03119 * 0.02562 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1671 0.0006 6 6 4.1559 2.6096 -0.0002 7 6 5.6859 2.6096 0.0011 8 6 6.1883 4.0304 0.0009 9 8 5.4001 4.9523 -0.0005 10 7 7.5134 4.2766 0.0014 11 6 7.9704 5.5691 0.0070 12 1 8.7972 5.8523 -0.6275 13 6 7.3698 6.5149 0.8290 14 7 6.6421 6.1284 1.8526 15 14 7.5969 8.3357 0.4788 16 1 7.0698 8.6492 -0.8736 17 1 6.8595 9.1306 1.4935 18 1 9.0415 8.6747 0.5378 19 6 8.4653 3.1631 0.0026 20 6 9.3611 3.2350 1.2565 21 6 10.7526 2.7727 0.7554 22 6 10.8341 3.4015 -0.6578 23 6 9.4013 3.2685 -1.2142 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.9500 -0.8401 0.0004 28 1 4.0095 0.6530 -0.8891 29 1 4.0089 0.6535 0.8909 30 1 3.7922 3.1240 0.8893 31 1 3.7929 3.1228 -0.8906 32 1 6.0499 2.0950 -0.8882 33 1 6.0485 2.0965 0.8918 34 1 6.2861 6.7860 2.4704 35 1 7.9296 2.2141 -0.0196 36 1 9.4110 4.2572 1.6315 37 1 8.9901 2.5617 2.0294 38 1 10.8000 1.6853 0.6976 39 1 11.5453 3.1590 1.3962 40 1 11.5379 2.8498 -1.2809 41 1 11.1230 4.4506 -0.5948 42 1 9.3204 2.3703 -1.8265 43 1 9.1475 4.1484 -1.8054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330751861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:12 Heat of formation + Delta-G solvation = -80.979757 kcal Electronic energy + Delta-G solvation = -22873.219674 eV Core-core repulsion = 19532.040919 eV Total energy + Delta-G solvation = -3341.178755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.58335 -38.74695 -36.70340 -34.63005 -33.87140 -32.95247 -31.42359 -28.81028 -28.01181 -26.78350 -26.35414 -24.32969 -21.81546 -20.24708 -20.04680 -19.71423 -18.78851 -17.21731 -16.16108 -15.85626 -15.79999 -15.67885 -14.85029 -14.63761 -14.30658 -14.08781 -13.71386 -13.29395 -13.25052 -12.71387 -12.47703 -12.42482 -12.24579 -11.66539 -11.51793 -11.17143 -10.94714 -10.82413 -10.70332 -10.64296 -10.55600 -10.42769 -10.37918 -10.21115 -10.06550 -9.97270 -9.74887 -9.68456 -9.17424 -8.60163 -7.85665 -6.92498 -5.97984 -3.69700 2.76102 3.22726 3.38021 3.45919 3.49670 4.32492 4.52045 4.80747 4.99041 5.10192 5.23064 5.28991 5.30635 5.32406 5.40611 5.49510 5.56903 5.64155 5.78392 5.91950 6.00492 6.03640 6.11941 6.15815 6.18585 6.27758 6.30295 6.33683 6.40758 6.48885 6.56963 6.66907 6.76882 6.86807 7.01821 7.03700 7.27559 7.44699 7.76385 8.30533 8.42647 9.22535 9.35335 9.84357 10.49296 11.11705 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.004718 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.815533 B = 5933.093396 C = 7298.423283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.745 5.745 3 C 0.509 3.491 4 O -0.530 6.530 5 C -0.139 4.139 6 C -0.083 4.083 7 C -0.134 4.134 8 C 0.474 3.526 9 O -0.532 6.532 10 N -0.452 5.452 11 C -0.343 4.343 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.833 5.833 15 Si 0.907 3.093 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.280 1.280 19 C 0.131 3.869 20 C -0.126 4.126 21 C -0.122 4.122 22 C -0.117 4.117 23 C -0.131 4.131 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.400 0.600 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 -15.889 -2.741 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.398 5.398 3 C 0.296 3.704 4 O -0.405 6.405 5 C -0.179 4.179 6 C -0.121 4.121 7 C -0.174 4.174 8 C 0.261 3.739 9 O -0.410 6.410 10 N -0.175 5.175 11 C -0.470 4.470 12 H 0.093 0.907 13 C -0.137 4.137 14 N -0.467 5.467 15 Si 0.735 3.265 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.206 1.206 19 C 0.025 3.975 20 C -0.164 4.164 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.170 4.170 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.233 0.767 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.630 -14.547 -2.621 14.871 hybrid contribution 0.353 0.270 0.032 0.446 sum -1.277 -14.277 -2.589 14.566 Atomic orbital electron populations 1.21487 0.80184 1.01748 1.02280 1.45902 1.07542 1.08921 1.77431 1.21001 0.90829 0.83306 0.75311 1.90743 1.70555 1.31253 1.47912 1.21762 0.90826 1.01482 1.03865 1.21011 0.93938 0.92425 1.04755 1.21620 0.96046 0.98138 1.01632 1.19860 0.83196 0.89166 0.81668 1.90538 1.54331 1.45898 1.50216 1.43398 1.02678 1.04346 1.67033 1.18736 1.19847 0.83850 1.24582 0.90722 1.25176 0.95430 0.99197 0.93866 1.69810 1.31301 1.34544 1.11003 0.86367 0.77424 0.84284 0.78440 1.20121 1.21393 1.20604 1.21663 0.91144 0.90911 0.93739 1.22667 0.93382 1.03063 0.97280 1.22447 0.97926 0.99102 0.96569 1.22258 0.96566 1.00713 0.95950 1.22462 0.94819 1.01389 0.98297 0.92426 0.91001 0.92396 0.76676 0.89187 0.89099 0.90636 0.91004 0.91248 0.91038 0.92788 0.91565 0.89133 0.93114 0.92603 0.92440 0.93015 0.91640 0.93041 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.70 59.85 0.64 1.42 16 2 N -0.74 -7.47 5.71 -67.08 -0.38 -7.85 16 3 C 0.51 7.36 7.83 -10.99 -0.09 7.27 16 4 O -0.53 -10.42 15.98 5.56 0.09 -10.33 16 5 C -0.14 -1.80 5.70 -27.88 -0.16 -1.96 16 6 C -0.08 -1.54 3.79 -26.73 -0.10 -1.64 16 7 C -0.13 -2.53 4.01 -27.88 -0.11 -2.64 16 8 C 0.47 12.09 6.96 -10.99 -0.08 12.02 16 9 O -0.53 -16.13 13.65 5.54 0.08 -16.06 16 10 N -0.45 -11.12 2.46 -106.54 -0.26 -11.38 16 11 C -0.34 -9.33 7.45 -14.93 -0.11 -9.44 16 12 H 0.08 1.97 7.08 -52.48 -0.37 1.60 16 13 C 0.07 2.09 4.35 -17.47 -0.08 2.02 16 14 N -0.83 -25.05 11.67 55.50 0.65 -24.40 16 15 Si 0.91 22.52 29.60 -169.99 -5.03 17.48 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.13 2.53 3.20 -66.81 -0.21 2.32 16 20 C -0.13 -2.33 6.42 -25.03 -0.16 -2.50 16 21 C -0.12 -1.83 6.91 -24.70 -0.17 -2.00 16 22 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 23 C -0.13 -2.24 6.20 -25.61 -0.16 -2.40 16 24 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.40 2.56 8.83 -40.82 -0.36 2.20 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.07 1.65 8.06 -51.93 -0.42 1.24 16 31 H 0.07 1.49 8.06 -51.93 -0.42 1.07 16 32 H 0.07 1.12 7.77 -51.93 -0.40 0.71 16 33 H 0.07 1.25 7.82 -51.93 -0.41 0.84 16 34 H 0.26 7.66 8.32 -40.82 -0.34 7.32 16 35 H 0.07 1.14 5.83 -51.93 -0.30 0.84 16 36 H 0.09 2.03 7.10 -51.93 -0.37 1.66 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.46 6.85 -51.93 -0.36 1.10 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -36.27 346.03 -7.80 -44.07 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.19 Total: 2.74 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -0.96 Total: 0.52 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.00 Total: -43.64 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: 0.16 Total: -26.39 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.27 -7.80 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330751861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.908 kcal (2) G-P(sol) polarization free energy of solvation -36.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds