Wall clock time and date at job start Tue Mar 31 2020 05:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 119.99968 * 2 1 4 4 O 1.21276 * 120.00430 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99828 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47169 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.47281 * 179.97438 * 6 5 3 8 8 C 1.50699 * 109.47204 * 180.02562 * 7 6 5 9 9 O 1.21294 * 120.00111 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99992 * 180.02562 * 8 7 6 11 11 C 1.37092 * 119.99912 * 180.27456 * 10 8 7 12 12 H 1.08003 * 119.99727 * 222.78762 * 11 10 8 13 13 C 1.38953 * 120.00098 * 42.78926 * 11 10 8 14 14 N 1.31406 * 119.99855 * 19.09529 * 13 11 10 15 15 Si 1.86805 * 119.99804 * 199.09467 * 13 11 10 16 16 H 1.48498 * 109.47059 * 59.99796 * 15 13 11 17 17 H 1.48498 * 109.46747 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47164 * 299.99900 * 15 13 11 19 19 C 1.46497 * 120.00043 * 359.97438 * 10 8 7 20 20 C 1.54269 * 110.03443 * 239.87248 * 19 10 8 21 21 C 1.54959 * 104.16271 * 217.13320 * 20 19 10 22 22 C 1.54890 * 102.77553 * 37.88923 * 21 20 19 23 23 C 1.53874 * 110.03529 * 122.65169 * 19 10 8 24 24 H 1.09008 * 109.46890 * 60.00121 * 1 2 3 25 25 H 1.08996 * 109.47570 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47351 * 300.00302 * 1 2 3 27 27 H 0.97002 * 119.99759 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47238 * 59.99900 * 5 3 2 29 29 H 1.09007 * 109.47500 * 299.99588 * 5 3 2 30 30 H 1.09000 * 109.47011 * 59.99897 * 6 5 3 31 31 H 1.08994 * 109.47255 * 300.00166 * 6 5 3 32 32 H 1.09003 * 109.46670 * 59.99734 * 7 6 5 33 33 H 1.09000 * 109.46945 * 300.00017 * 7 6 5 34 34 H 0.97001 * 119.99613 * 174.74084 * 14 13 11 35 35 H 1.09006 * 110.01944 * 1.26139 * 19 10 8 36 36 H 1.08999 * 110.48342 * 335.78880 * 20 19 10 37 37 H 1.09006 * 110.48397 * 98.42653 * 20 19 10 38 38 H 1.08996 * 110.72047 * 279.57752 * 21 20 19 39 39 H 1.09002 * 110.92489 * 156.28921 * 21 20 19 40 40 H 1.09001 * 110.48895 * 203.40644 * 22 21 20 41 41 H 1.08999 * 110.60414 * 80.81750 * 22 21 20 42 42 H 1.08995 * 110.03602 * 238.57141 * 23 19 10 43 43 H 1.09003 * 110.03119 * 0.02562 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6458 1.1671 0.0006 6 6 4.1559 2.6096 -0.0002 7 6 5.6859 2.6096 0.0011 8 6 6.1883 4.0304 0.0009 9 8 5.4001 4.9523 -0.0005 10 7 7.5134 4.2766 0.0014 11 6 7.9704 5.5691 0.0070 12 1 8.7972 5.8523 -0.6275 13 6 7.3698 6.5149 0.8290 14 7 6.6421 6.1284 1.8526 15 14 7.5969 8.3357 0.4788 16 1 7.0698 8.6492 -0.8736 17 1 6.8595 9.1306 1.4935 18 1 9.0415 8.6747 0.5378 19 6 8.4653 3.1631 0.0026 20 6 9.3611 3.2350 1.2565 21 6 10.7526 2.7727 0.7554 22 6 10.8341 3.4015 -0.6578 23 6 9.4013 3.2685 -1.2142 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.9500 -0.8401 0.0004 28 1 4.0095 0.6530 -0.8891 29 1 4.0089 0.6535 0.8909 30 1 3.7922 3.1240 0.8893 31 1 3.7929 3.1228 -0.8906 32 1 6.0499 2.0950 -0.8882 33 1 6.0485 2.0965 0.8918 34 1 6.2861 6.7860 2.4704 35 1 7.9296 2.2141 -0.0196 36 1 9.4110 4.2572 1.6315 37 1 8.9901 2.5617 2.0294 38 1 10.8000 1.6853 0.6976 39 1 11.5453 3.1590 1.3962 40 1 11.5379 2.8498 -1.2809 41 1 11.1230 4.4506 -0.5948 42 1 9.3204 2.3703 -1.8265 43 1 9.1475 4.1484 -1.8054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330751861.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:11 Heat of formation + Delta-G solvation = -107.413745 kcal Electronic energy + Delta-G solvation = -22874.365938 eV Core-core repulsion = 19532.040919 eV Total energy + Delta-G solvation = -3342.325019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80655 -40.41483 -38.32342 -35.68733 -35.43250 -34.74428 -33.38630 -30.14135 -29.36693 -28.34569 -27.53511 -26.05784 -23.30448 -21.39422 -21.33329 -21.25862 -20.57480 -18.52791 -17.80011 -17.50429 -17.02143 -16.82898 -16.58708 -16.12969 -15.87124 -15.66611 -15.12247 -14.72445 -14.62213 -14.07794 -13.96882 -13.80036 -13.35362 -13.13585 -12.97236 -12.85429 -12.68474 -12.50717 -12.38447 -12.27756 -12.15325 -12.05039 -11.78128 -11.72260 -11.62809 -11.30338 -11.21294 -10.95474 -10.67722 -10.11475 -9.87950 -8.94720 -8.13840 -5.85795 1.33968 1.43840 1.45848 1.66917 2.29136 2.35804 2.59344 3.26048 3.31954 3.84200 3.94214 3.98775 4.05754 4.16415 4.22993 4.39814 4.49258 4.59632 4.61159 4.70604 4.71964 4.76563 4.78059 4.87464 4.89594 4.94047 4.99248 5.01391 5.19757 5.24541 5.27338 5.35208 5.43249 5.49207 5.54708 5.63433 5.64194 5.75575 6.30371 6.60951 7.14465 7.33399 7.36208 7.84972 8.52021 8.95966 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015980 B = 0.004718 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.815533 B = 5933.093396 C = 7298.423283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.722 5.722 3 C 0.501 3.499 4 O -0.597 6.597 5 C -0.125 4.125 6 C -0.075 4.075 7 C -0.118 4.118 8 C 0.451 3.549 9 O -0.597 6.597 10 N -0.463 5.463 11 C -0.343 4.343 12 H 0.075 0.925 13 C 0.021 3.979 14 N -0.871 5.871 15 Si 0.958 3.042 16 H -0.285 1.285 17 H -0.293 1.293 18 H -0.255 1.255 19 C 0.120 3.880 20 C -0.127 4.127 21 C -0.109 4.109 22 C -0.115 4.115 23 C -0.128 4.128 24 H 0.044 0.956 25 H 0.116 0.884 26 H 0.042 0.958 27 H 0.423 0.577 28 H 0.132 0.868 29 H 0.125 0.875 30 H 0.026 0.974 31 H 0.037 0.963 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.253 0.747 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.296 -20.062 -3.707 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.376 5.376 3 C 0.289 3.711 4 O -0.477 6.477 5 C -0.164 4.164 6 C -0.114 4.114 7 C -0.158 4.158 8 C 0.240 3.760 9 O -0.479 6.479 10 N -0.184 5.184 11 C -0.471 4.471 12 H 0.093 0.907 13 C -0.185 4.185 14 N -0.507 5.507 15 Si 0.784 3.216 16 H -0.212 1.212 17 H -0.219 1.219 18 H -0.180 1.180 19 C 0.017 3.983 20 C -0.165 4.165 21 C -0.147 4.147 22 C -0.152 4.152 23 C -0.166 4.166 24 H 0.063 0.937 25 H 0.135 0.865 26 H 0.061 0.939 27 H 0.260 0.740 28 H 0.150 0.850 29 H 0.143 0.857 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.129 0.871 33 H 0.113 0.887 34 H 0.062 0.938 35 H 0.116 0.884 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.301 -18.810 -3.597 19.154 hybrid contribution -0.219 1.488 0.278 1.529 sum 0.082 -17.323 -3.320 17.638 Atomic orbital electron populations 1.21646 0.79394 1.04223 1.00937 1.45729 1.08147 1.08610 1.75066 1.21367 0.91693 0.83474 0.74583 1.90730 1.71811 1.33850 1.51355 1.21673 0.89627 0.97682 1.07453 1.20810 0.93930 0.95810 1.00806 1.21539 0.95789 0.93916 1.04532 1.21101 0.83103 0.91531 0.80276 1.90499 1.56000 1.48522 1.52840 1.43687 1.03654 1.04967 1.66122 1.18958 1.19002 0.85694 1.23401 0.90697 1.25928 0.95684 1.02905 0.93976 1.69930 1.33501 1.35021 1.12250 0.85553 0.78510 0.80235 0.77264 1.21153 1.21876 1.17983 1.22058 0.90910 0.90149 0.95217 1.22600 0.96143 1.00561 0.97235 1.22409 0.95342 1.01024 0.95910 1.22256 0.96065 1.00133 0.96782 1.22436 0.95259 1.01662 0.97248 0.93735 0.86507 0.93945 0.74000 0.84978 0.85709 0.95499 0.94432 0.87088 0.88653 0.93751 0.88441 0.93989 0.92262 0.89227 0.91710 0.89600 0.93818 0.89440 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 10.70 127.77 1.37 2.69 16 2 N -0.72 -12.58 5.71 -484.53 -2.77 -15.34 16 3 C 0.50 13.98 7.83 87.66 0.69 14.67 16 4 O -0.60 -24.53 15.98 -3.02 -0.05 -24.58 16 5 C -0.12 -2.87 5.70 29.85 0.17 -2.70 16 6 C -0.07 -2.81 3.79 30.60 0.12 -2.69 16 7 C -0.12 -4.25 4.01 29.85 0.12 -4.13 16 8 C 0.45 23.48 6.96 87.66 0.61 24.09 16 9 O -0.60 -38.22 13.65 -3.07 -0.04 -38.27 16 10 N -0.46 -22.97 2.46 -609.37 -1.50 -24.47 16 11 C -0.34 -19.20 7.45 84.04 0.63 -18.57 16 12 H 0.08 4.08 7.08 -2.91 -0.02 4.06 16 13 C 0.02 1.22 4.35 84.93 0.37 1.59 16 14 N -0.87 -55.23 11.67 21.66 0.25 -54.98 16 15 Si 0.96 48.09 29.60 68.60 2.03 50.12 16 16 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 17 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 19 C 0.12 4.40 3.20 45.72 0.15 4.55 16 20 C -0.13 -4.52 6.42 31.69 0.20 -4.32 16 21 C -0.11 -2.85 6.91 31.91 0.22 -2.63 16 22 C -0.11 -3.13 6.83 31.67 0.22 -2.91 16 23 C -0.13 -4.00 6.20 31.32 0.19 -3.80 16 24 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.42 3.54 8.83 -92.71 -0.82 2.72 16 28 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.03 1.23 8.06 -2.39 -0.02 1.22 16 31 H 0.04 1.63 8.06 -2.39 -0.02 1.61 16 32 H 0.11 3.10 7.77 -2.39 -0.02 3.08 16 33 H 0.10 3.02 7.82 -2.39 -0.02 3.00 16 34 H 0.25 15.76 8.32 -92.71 -0.77 14.98 16 35 H 0.10 2.92 5.83 -2.38 -0.01 2.91 16 36 H 0.04 1.91 7.10 -2.39 -0.02 1.89 16 37 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.04 1.65 6.85 -2.39 -0.02 1.63 16 Total: -1.00 -89.59 346.03 3.15 -86.44 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.17 Total: 15.25 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 5.05 Total: 5.83 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -4.01 Total: -94.79 kcal Atomic # 8 Polarization: -62.75 SS G_CDS: -0.09 Total: -62.84 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -89.59 3.15 -86.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330751861.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.976 kcal (2) G-P(sol) polarization free energy of solvation -89.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds