Wall clock time and date at job start Tue Mar 31 2020 07:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48503 * 109.47029 * 270.00350 * 3 2 1 5 5 H 1.48502 * 109.46888 * 30.00159 * 3 2 1 6 6 H 1.48494 * 109.46901 * 150.00357 * 3 2 1 7 7 C 1.37882 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47235 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47592 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99684 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00042 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99818 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.47373 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.46997 * 180.02562 * 15 14 13 17 17 N 1.46906 * 109.46897 * 180.02562 * 16 15 14 18 18 C 1.46898 * 110.99888 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47098 * 274.99671 * 18 17 16 20 20 C 1.52996 * 109.47141 * 180.02562 * 19 18 17 21 21 C 1.52997 * 109.47347 * 60.00218 * 20 19 18 22 22 C 1.53004 * 109.46854 * 299.99842 * 21 20 19 23 23 C 1.52998 * 109.46733 * 155.00124 * 18 17 16 24 24 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47247 * 59.99956 * 9 7 2 26 26 H 1.09004 * 109.47103 * 299.99834 * 9 7 2 27 27 H 1.09004 * 109.47368 * 59.99937 * 10 9 7 28 28 H 1.09004 * 109.47108 * 300.00038 * 10 9 7 29 29 H 0.97003 * 120.00651 * 359.97438 * 13 11 10 30 30 H 1.09000 * 109.47175 * 59.99847 * 14 13 11 31 31 H 1.08996 * 109.47197 * 300.00089 * 14 13 11 32 32 H 1.09000 * 109.46866 * 59.99938 * 15 14 13 33 33 H 1.09001 * 109.46611 * 300.00055 * 15 14 13 34 34 H 1.09000 * 109.47486 * 60.00167 * 16 15 14 35 35 H 1.09001 * 109.47362 * 299.99445 * 16 15 14 36 36 H 1.00902 * 110.99923 * 303.95801 * 17 16 15 37 37 H 1.08996 * 109.47149 * 35.00177 * 18 17 16 38 38 H 1.09002 * 109.47229 * 300.00584 * 19 18 17 39 39 H 1.09000 * 109.47371 * 60.00269 * 19 18 17 40 40 H 1.09002 * 109.47270 * 300.00234 * 20 19 18 41 41 H 1.09007 * 109.47009 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.47093 * 180.02562 * 21 20 19 43 43 H 1.08996 * 109.47026 * 60.00239 * 21 20 19 44 44 H 1.08990 * 109.47208 * 300.00165 * 22 21 20 45 45 H 1.08997 * 109.46955 * 179.97438 * 22 21 20 46 46 H 1.09007 * 109.47319 * 299.99691 * 23 18 17 47 47 H 1.08996 * 109.47984 * 59.99944 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5285 -2.6366 -0.0009 12 8 6.1350 -1.5863 -0.0005 13 7 6.2023 -3.8038 -0.0014 14 6 7.6673 -3.8038 -0.0019 15 6 8.1774 -5.2464 -0.0016 16 6 9.7074 -5.2463 -0.0015 17 7 10.1971 -6.6313 -0.0019 18 6 11.6655 -6.6705 -0.0024 19 6 12.1782 -6.5583 -1.4395 20 6 13.7076 -6.5997 -1.4402 21 6 14.1823 -7.9205 -0.8311 22 6 13.6696 -8.0327 0.6061 23 6 12.1406 -7.9911 0.6068 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8888 26 1 3.8745 -0.6801 -0.8912 27 1 3.6579 -3.1507 -0.8907 28 1 3.6585 -3.1502 0.8893 29 1 5.7174 -4.6439 -0.0013 30 1 8.0310 -3.2901 0.8880 31 1 8.0303 -3.2899 -0.8919 32 1 7.8137 -5.7604 -0.8913 33 1 7.8143 -5.7599 0.8887 34 1 10.0707 -4.7323 0.8884 35 1 10.0708 -4.7327 -0.8916 36 1 9.8214 -7.1479 0.7793 37 1 12.0514 -5.8388 0.5870 38 1 11.7922 -7.3900 -2.0290 39 1 11.8397 -5.6175 -1.8737 40 1 14.0938 -5.7682 -0.8506 41 1 14.0728 -6.5193 -2.4641 42 1 15.2719 -7.9497 -0.8312 43 1 13.7961 -8.7520 -1.4206 44 1 14.0558 -7.2012 1.1955 45 1 14.0074 -8.9738 1.0399 46 1 11.7754 -8.0711 1.6308 47 1 11.7548 -8.8228 0.0175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419900412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:57 Heat of formation + Delta-G solvation = -81.117947 kcal Electronic energy + Delta-G solvation = -21305.318853 eV Core-core repulsion = 18099.967200 eV Total energy + Delta-G solvation = -3205.351653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.42115 -39.15596 -36.44228 -34.60136 -33.44969 -31.85167 -31.22378 -31.05125 -28.72813 -26.31173 -24.40182 -23.11668 -21.96054 -21.67337 -21.10257 -20.11680 -19.53008 -17.18015 -16.47434 -16.10211 -15.91024 -15.77293 -15.34393 -14.84150 -14.79946 -14.53653 -14.24223 -14.07576 -13.39346 -13.23010 -13.04951 -12.63287 -12.55377 -12.54470 -12.32608 -11.89559 -11.74995 -11.66623 -11.53056 -11.38731 -11.15853 -10.96807 -10.92588 -10.67345 -10.47801 -10.13985 -10.02288 -9.76612 -9.22084 -9.14287 -8.86462 -8.79740 -8.48927 -6.01396 -3.99948 3.16029 3.36945 3.39362 3.45741 3.57040 3.78125 4.25504 4.30745 4.52607 4.55141 4.69191 4.77541 4.79976 4.87250 4.93505 5.02393 5.08849 5.10273 5.17069 5.28155 5.34127 5.36311 5.43656 5.45557 5.53312 5.59305 5.66138 5.72369 5.75303 5.80810 5.86641 5.91726 5.98337 6.03979 6.11590 6.13125 6.62095 6.70054 6.73103 7.00300 7.38960 7.45976 7.78576 7.83319 8.52151 8.69094 9.01852 9.61777 11.11418 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.053197 B = 0.001981 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.216414 B =14132.128996 C =14403.661121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.509 3.491 12 O -0.542 6.542 13 N -0.742 5.742 14 C 0.120 3.880 15 C -0.128 4.128 16 C 0.062 3.938 17 N -0.688 5.688 18 C 0.088 3.912 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.121 4.121 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.399 0.601 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.341 0.659 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.189 -19.171 0.231 34.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.162 4.162 11 C 0.297 3.703 12 O -0.419 6.419 13 N -0.396 5.396 14 C -0.004 4.004 15 C -0.166 4.166 16 C -0.067 4.067 17 N -0.319 5.319 18 C -0.022 4.022 19 C -0.145 4.145 20 C -0.159 4.159 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.159 4.159 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.233 0.767 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.159 0.841 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 28.420 -18.333 -0.444 33.823 hybrid contribution 0.303 0.726 0.910 1.203 sum 28.723 -17.607 0.466 33.694 Atomic orbital electron populations 1.69914 1.06282 1.26940 1.51129 1.24976 0.94715 0.99233 0.94350 0.86792 0.80610 0.83381 0.78747 1.20238 1.21454 1.18551 1.21126 0.89309 0.94566 1.51271 0.90926 1.19369 0.96379 0.90290 0.97647 1.21667 0.88014 1.03228 1.03325 1.21540 0.91597 0.82798 0.74326 1.90649 1.70885 1.31527 1.48794 1.46146 1.06503 1.09275 1.77687 1.21168 0.81063 0.96117 1.02091 1.21744 0.95190 0.96349 1.03341 1.21894 0.94442 0.89398 1.01005 1.60469 1.07598 1.13677 1.50122 1.21531 0.87128 0.96931 0.96609 1.21525 0.94450 1.02450 0.96123 1.21551 0.95859 0.97606 1.00882 1.21549 1.00195 0.97971 0.96081 1.21491 0.95139 1.01831 0.97069 1.21706 0.95994 0.97703 1.00490 0.92742 0.95856 0.96279 0.89609 0.89625 0.76716 0.92041 0.91800 0.90302 0.91428 0.94945 0.90634 0.84095 0.93901 0.91247 0.92079 0.92184 0.91815 0.92109 0.91851 0.92075 0.91820 0.92165 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 0.03 3.33 -27.89 -0.09 -0.07 16 10 C -0.12 -2.41 5.64 -27.88 -0.16 -2.56 16 11 C 0.51 9.44 7.83 -10.99 -0.09 9.36 16 12 O -0.54 -12.32 15.98 5.56 0.09 -12.23 16 13 N -0.74 -9.94 5.56 -60.29 -0.33 -10.27 16 14 C 0.12 1.40 5.67 -4.04 -0.02 1.38 16 15 C -0.13 -1.05 5.59 -26.73 -0.15 -1.20 16 16 C 0.06 0.49 5.48 -3.82 -0.02 0.47 16 17 N -0.69 -4.99 6.31 -106.73 -0.67 -5.67 16 18 C 0.09 0.59 2.49 -67.72 -0.17 0.42 16 19 C -0.11 -0.74 5.42 -26.74 -0.15 -0.89 16 20 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 21 C -0.12 -0.63 5.92 -26.73 -0.16 -0.79 16 22 C -0.12 -0.61 5.92 -26.75 -0.16 -0.77 16 23 C -0.12 -0.69 5.19 -26.75 -0.14 -0.83 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.02 0.62 7.16 -51.93 -0.37 0.24 16 26 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 29 H 0.40 4.14 8.47 -40.82 -0.35 3.80 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.03 0.26 8.06 -51.93 -0.42 -0.16 16 35 H 0.08 0.64 7.43 -51.93 -0.39 0.25 16 36 H 0.34 2.17 8.35 -39.29 -0.33 1.84 16 37 H 0.04 0.32 7.80 -51.93 -0.41 -0.09 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.47 7.45 -51.93 -0.39 0.08 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -33.80 370.24 -10.08 -43.88 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -8.96 Total: -2.10 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.89 Total: -9.92 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.23 Total: -43.39 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.09 Total: -12.23 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.80 -10.08 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419900412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.233 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds