Wall clock time and date at job start Tue Mar 31 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 114.00096 * 2 1 4 4 C 1.52998 * 112.85252 * 64.07874 * 3 2 1 5 5 N 1.46507 * 109.46793 * 48.84059 * 4 3 2 6 6 C 1.34780 * 119.99353 * 183.21382 * 5 4 3 7 7 O 1.21580 * 120.00420 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99329 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99745 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47243 * 175.83231 * 9 8 6 11 11 C 1.50705 * 115.55069 * 296.05713 * 10 9 8 12 12 H 1.07995 * 120.00080 * 99.48948 * 11 10 9 13 13 C 1.37875 * 119.99764 * 279.21248 * 11 10 9 14 14 N 1.31521 * 119.99969 * 4.35491 * 13 11 10 15 15 Si 1.86796 * 120.00149 * 184.35117 * 13 11 10 16 16 H 1.48493 * 109.47188 * 90.00168 * 15 13 11 17 17 H 1.48504 * 109.47377 * 210.00236 * 15 13 11 18 18 H 1.48503 * 109.46865 * 330.00096 * 15 13 11 19 19 C 1.53003 * 117.51937 * 81.75527 * 10 9 8 20 20 C 1.52994 * 117.50066 * 150.38409 * 10 9 8 21 21 C 1.53778 * 113.68917 * 195.34958 * 3 2 1 22 22 C 1.53777 * 87.08213 * 89.12311 * 21 3 2 23 23 C 1.53780 * 87.08140 * 25.43442 * 22 21 3 24 24 H 1.08999 * 109.46889 * 301.97677 * 1 2 3 25 25 H 1.08995 * 109.46872 * 61.97690 * 1 2 3 26 26 H 1.08996 * 109.46884 * 181.97414 * 1 2 3 27 27 H 1.09004 * 109.47381 * 288.84672 * 4 3 2 28 28 H 1.08998 * 109.47635 * 168.83972 * 4 3 2 29 29 H 0.96997 * 120.00062 * 3.21544 * 5 4 3 30 30 H 0.96997 * 120.00087 * 0.02562 * 8 6 5 31 31 H 1.08998 * 109.47191 * 55.83117 * 9 8 6 32 32 H 1.09000 * 109.47340 * 295.83023 * 9 8 6 33 33 H 0.97000 * 119.99550 * 184.61145 * 14 13 11 34 34 H 1.08998 * 117.50002 * 214.97389 * 19 10 9 35 35 H 1.09003 * 117.49486 * 359.97438 * 19 10 9 36 36 H 1.09002 * 117.50072 * 359.97438 * 20 10 9 37 37 H 1.09004 * 117.50012 * 144.97535 * 20 10 9 38 38 H 1.09001 * 113.61624 * 203.67525 * 21 3 2 39 39 H 1.09002 * 113.61470 * 334.57746 * 21 3 2 40 40 H 1.08999 * 113.61775 * 270.88375 * 22 21 3 41 41 H 1.09009 * 113.61148 * 139.97748 * 22 21 3 42 42 H 1.08998 * 113.61297 * 220.01915 * 23 22 21 43 43 H 1.08998 * 113.69605 * 89.12165 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.6890 2.0990 1.2680 5 7 1.9591 1.2692 2.4449 6 6 1.6863 1.7397 3.6781 7 8 1.2156 2.8524 3.8138 8 7 1.9343 0.9762 4.7606 9 6 1.6383 1.4877 6.1011 10 6 1.9121 0.3947 7.1361 11 6 1.0413 -0.8310 7.0330 12 1 1.4150 -1.7194 6.5458 13 6 -0.2303 -0.8199 7.5656 14 7 -0.7152 0.2858 8.0874 15 14 -1.2647 -2.3752 7.5462 16 1 -1.0190 -3.1487 8.7897 17 1 -2.7025 -2.0126 7.4648 18 1 -0.8950 -3.2008 6.3685 19 6 3.3602 0.1963 7.5887 20 6 2.3441 0.8386 8.5351 21 6 3.5022 1.3175 -0.3728 22 6 3.0545 1.4589 -1.8371 23 6 1.7603 2.0910 -1.2982 24 1 -0.3633 0.5442 0.8717 25 1 -0.3633 0.4828 -0.9071 26 1 -0.3633 -1.0270 0.0354 27 1 0.6376 2.3867 1.2600 28 1 2.3103 2.9938 1.3040 29 1 2.3343 0.3813 2.3365 30 1 2.3095 0.0883 4.6523 31 1 0.5907 1.7838 6.1539 32 1 2.2707 2.3510 6.3085 33 1 -1.5824 0.2774 8.5217 34 1 3.6830 -0.8206 7.8117 35 1 4.1182 0.8444 7.1486 36 1 2.4336 1.9095 8.7181 37 1 1.9981 0.2445 9.3809 38 1 4.0397 2.1871 0.0054 39 1 4.0127 0.3780 -0.1611 40 1 2.8978 0.5046 -2.3399 41 1 3.6685 2.1482 -2.4168 42 1 0.8647 1.7760 -1.8336 43 1 1.8202 3.1721 -1.1727 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430891939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:29 Heat of formation + Delta-G solvation = -31.397730 kcal Electronic energy + Delta-G solvation = -22729.829078 eV Core-core repulsion = 19390.800361 eV Total energy + Delta-G solvation = -3339.028717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38833 -39.00437 -36.71753 -35.76397 -33.93343 -33.13607 -31.95908 -28.29853 -27.20721 -25.99730 -25.61164 -24.86608 -22.52523 -21.18887 -20.23589 -19.62427 -19.31777 -17.80237 -16.75918 -16.21645 -15.78896 -15.45480 -15.14123 -14.91367 -14.59735 -14.37509 -14.05446 -13.94631 -13.55134 -13.15399 -12.87351 -12.63739 -12.50527 -11.95871 -11.64699 -11.59696 -11.49584 -11.22487 -11.04101 -11.03360 -10.84377 -10.52597 -10.34305 -10.25376 -9.72731 -9.62588 -9.43356 -8.93764 -8.76060 -8.48074 -8.23733 -7.88800 -6.05623 -4.13752 3.15575 3.27535 3.35410 3.36642 3.57842 3.87568 4.28640 4.35536 4.38153 4.54698 4.56336 4.96642 5.08728 5.20258 5.24446 5.33498 5.38720 5.44605 5.49177 5.53274 5.61332 5.64544 5.75272 5.83302 5.98173 6.02632 6.06211 6.35915 6.51235 6.61973 6.71004 6.81094 6.90672 7.07685 7.09803 7.38640 7.45223 7.52317 7.67825 7.84578 8.36711 8.74783 8.87442 9.28966 9.53269 11.02984 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019889 B = 0.004149 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.458293 B = 6746.519868 C = 7486.748575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.077 3.923 4 C 0.131 3.869 5 N -0.747 5.747 6 C 0.698 3.302 7 O -0.607 6.607 8 N -0.719 5.719 9 C 0.182 3.818 10 C 0.030 3.970 11 C -0.497 4.497 12 H 0.059 0.941 13 C 0.073 3.927 14 N -0.874 5.874 15 Si 0.889 3.111 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.210 4.210 20 C -0.152 4.152 21 C -0.123 4.123 22 C -0.134 4.134 23 C -0.160 4.160 24 H 0.049 0.951 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.398 0.602 30 H 0.395 0.605 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.164 1.016 -17.264 18.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.277 6.277 3 C 0.037 3.963 4 C 0.005 3.995 5 N -0.404 5.404 6 C 0.398 3.602 7 O -0.487 6.487 8 N -0.371 5.371 9 C 0.058 3.942 10 C 0.029 3.971 11 C -0.534 4.534 12 H 0.077 0.923 13 C -0.131 4.131 14 N -0.510 5.510 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.247 4.247 20 C -0.190 4.190 21 C -0.160 4.160 22 C -0.171 4.171 23 C -0.198 4.198 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.232 0.768 30 H 0.228 0.772 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.623 1.985 -17.058 18.070 hybrid contribution -0.637 -1.423 0.093 1.562 sum 4.986 0.562 -16.965 17.692 Atomic orbital electron populations 1.22777 0.80664 1.02983 1.00438 1.87890 1.20081 1.25022 1.94695 1.22867 0.95783 0.84517 0.93147 1.21493 1.01485 0.93430 0.83082 1.44894 1.71038 1.20255 1.04244 1.16043 0.79169 0.84600 0.80433 1.90860 1.51858 1.20249 1.85702 1.45100 1.67504 1.18971 1.05533 1.20828 1.00577 0.94152 0.78617 1.19051 0.90795 0.95528 0.91728 1.20351 0.97631 0.96752 1.38709 0.92261 1.24966 0.97203 0.95724 0.95163 1.69999 1.18632 1.25726 1.36637 0.86646 0.79669 0.83573 0.78431 1.20676 1.21291 1.19876 1.22987 0.93775 1.00246 1.07719 1.22514 1.03037 0.97848 0.95649 1.23017 0.93593 1.03385 0.96000 1.22759 0.96793 1.01228 0.96366 1.23474 0.99188 1.00570 0.96576 0.93186 0.94039 0.89424 0.91755 0.91078 0.76822 0.77171 0.90767 0.95114 0.92922 0.90406 0.91597 0.91647 0.89923 0.88552 0.90272 0.89793 0.91192 0.90727 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.62 101.05 1.07 1.36 16 2 O -0.36 -4.19 10.01 -35.23 -0.35 -4.54 16 3 C 0.08 0.81 0.79 -89.81 -0.07 0.73 16 4 C 0.13 1.71 4.58 -4.04 -0.02 1.70 16 5 N -0.75 -11.42 5.42 -65.22 -0.35 -11.77 16 6 C 0.70 13.99 8.57 -86.91 -0.74 13.25 16 7 O -0.61 -14.52 16.34 5.30 0.09 -14.43 16 8 N -0.72 -14.65 5.45 -65.23 -0.36 -15.00 16 9 C 0.18 4.28 5.50 -4.04 -0.02 4.25 16 10 C 0.03 0.71 1.31 -155.66 -0.20 0.50 16 11 C -0.50 -12.92 8.63 -34.44 -0.30 -13.22 16 12 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 13 C 0.07 1.97 5.42 -17.82 -0.10 1.87 16 14 N -0.87 -24.58 13.06 55.43 0.72 -23.86 16 15 Si 0.89 20.81 29.54 -169.99 -5.02 15.78 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.21 -4.38 9.96 -26.73 -0.27 -4.64 16 20 C -0.15 -3.49 9.63 -26.74 -0.26 -3.75 16 21 C -0.12 -1.09 7.47 -25.92 -0.19 -1.28 16 22 C -0.13 -1.04 8.02 -25.92 -0.21 -1.25 16 23 C -0.16 -1.35 7.22 -25.92 -0.19 -1.53 16 24 H 0.05 0.60 6.98 -51.93 -0.36 0.24 16 25 H 0.04 0.37 6.84 -51.93 -0.36 0.01 16 26 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.92 7.45 -51.93 -0.39 0.54 16 28 H 0.07 0.93 7.94 -51.93 -0.41 0.51 16 29 H 0.40 5.43 8.16 -40.82 -0.33 5.10 16 30 H 0.40 7.34 8.43 -40.82 -0.34 6.99 16 31 H 0.07 2.03 8.14 -51.93 -0.42 1.60 16 32 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 38 H 0.10 0.79 7.96 -51.93 -0.41 0.38 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 42 H 0.07 0.61 6.85 -51.93 -0.36 0.25 16 43 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -30.70 355.10 -8.57 -39.27 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.15 Total: 11.19 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -1.49 Total: -2.00 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.01 Total: -50.63 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.27 Total: -18.97 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.70 -8.57 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430891939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.877 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds