Wall clock time and date at job start Tue Mar 31 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00211 * 2 1 4 4 N 1.46497 * 109.47110 * 124.99965 * 3 2 1 5 5 C 1.46503 * 119.99920 * 265.44916 * 4 3 2 6 6 C 1.53010 * 109.46904 * 269.99826 * 5 4 3 7 7 O 1.42901 * 109.46732 * 64.99864 * 6 5 4 8 8 C 1.42898 * 113.99441 * 180.02562 * 7 6 5 9 9 C 1.34774 * 120.00370 * 85.44427 * 4 3 2 10 10 O 1.21591 * 120.00149 * 184.92067 * 9 4 3 11 11 N 1.34777 * 120.00047 * 4.91520 * 9 4 3 12 12 C 1.46496 * 120.00196 * 175.11294 * 11 9 4 13 13 C 1.53002 * 109.47102 * 184.39144 * 12 11 9 14 14 C 1.50697 * 115.55392 * 306.91912 * 13 12 11 15 15 H 1.07998 * 120.00459 * 144.04221 * 14 13 12 16 16 C 1.37883 * 119.99941 * 324.04919 * 14 13 12 17 17 N 1.31511 * 120.00032 * 0.15451 * 16 14 13 18 18 Si 1.86797 * 120.00084 * 180.16369 * 16 14 13 19 19 H 1.48494 * 109.47527 * 89.99629 * 18 16 14 20 20 H 1.48500 * 109.47052 * 209.99939 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99449 * 18 16 14 22 22 C 1.53003 * 117.49835 * 161.25195 * 13 12 11 23 23 C 1.53000 * 117.49816 * 92.59103 * 13 12 11 24 24 H 1.08005 * 119.99546 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00505 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.99546 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47314 * 4.99609 * 3 2 1 28 28 H 1.09000 * 109.46899 * 244.99347 * 3 2 1 29 29 H 1.09001 * 109.47066 * 29.99599 * 5 4 3 30 30 H 1.09003 * 109.47524 * 149.99888 * 5 4 3 31 31 H 1.08998 * 109.47059 * 185.00042 * 6 5 4 32 32 H 1.08997 * 109.46806 * 304.99933 * 6 5 4 33 33 H 1.09000 * 109.46969 * 299.99712 * 8 7 6 34 34 H 1.08999 * 109.47862 * 60.00073 * 8 7 6 35 35 H 1.09004 * 109.47046 * 180.02562 * 8 7 6 36 36 H 0.97000 * 119.99610 * 354.84411 * 11 9 4 37 37 H 1.08999 * 109.47616 * 304.39449 * 12 11 9 38 38 H 1.09001 * 109.46886 * 64.39432 * 12 11 9 39 39 H 0.96992 * 120.00172 * 185.01550 * 17 16 14 40 40 H 1.09003 * 117.49935 * 359.97438 * 22 13 12 41 41 H 1.08997 * 117.49836 * 145.02313 * 22 13 12 42 42 H 1.09001 * 117.49768 * 214.97789 * 23 13 12 43 43 H 1.09001 * 117.49352 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5925 1.9551 2.3951 6 6 2.9739 3.4368 2.3766 7 8 2.2198 4.1101 1.3667 8 6 2.5023 5.5072 1.2651 9 6 4.2187 0.7830 1.0099 10 8 4.9573 0.7251 1.9740 11 7 4.6250 0.2983 -0.1803 12 6 5.9932 -0.2002 -0.3397 13 6 6.2278 -0.5874 -1.8012 14 6 5.2198 -1.5395 -2.3913 15 1 4.9223 -1.4389 -3.4246 16 6 4.6771 -2.5391 -1.6120 17 7 5.0369 -2.6598 -0.3528 18 14 3.4309 -3.7222 -2.3447 19 1 4.1390 -4.8948 -2.9178 20 1 2.4974 -4.1777 -1.2834 21 1 2.6654 -3.0343 -3.4153 22 6 7.6773 -0.7101 -2.2756 23 6 6.8215 0.4761 -2.7273 24 1 -0.5399 0.9354 -0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3587 2.1316 0.0895 28 1 2.6214 1.4025 -0.9313 29 1 1.5141 1.8590 2.5212 30 1 3.1006 1.4594 3.2222 31 1 2.7567 3.8799 3.3485 32 1 4.0380 3.5353 2.1620 33 1 2.2755 5.9936 2.2138 34 1 3.5565 5.6485 1.0272 35 1 1.8897 5.9453 0.4770 36 1 4.0101 0.2760 -0.9302 37 1 6.6996 0.5786 -0.0523 38 1 6.1377 -1.0742 0.2954 39 1 4.7116 -3.4055 0.1753 40 1 8.4637 -0.5145 -1.5466 41 1 7.9015 -1.4791 -3.0148 42 1 6.4831 0.4868 -3.7634 43 1 7.0444 1.4517 -2.2953 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431200077.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:01 Heat of formation + Delta-G solvation = -20.534702 kcal Electronic energy + Delta-G solvation = -23522.555458 eV Core-core repulsion = 20183.997797 eV Total energy + Delta-G solvation = -3338.557661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.55708 -37.76266 -36.74832 -35.55351 -33.22851 -32.67939 -32.13861 -29.67048 -26.52312 -26.06296 -25.48467 -24.85884 -22.43331 -21.19636 -20.00499 -19.23440 -18.78064 -17.47709 -16.48547 -16.29289 -15.92377 -15.60619 -15.03152 -14.77653 -14.55148 -14.27340 -13.82750 -13.50245 -13.25731 -12.93080 -12.56648 -12.23413 -12.15573 -11.80680 -11.67959 -11.66721 -11.35857 -11.12583 -11.03822 -10.94345 -10.72484 -10.50181 -10.23143 -9.70035 -9.63859 -9.21304 -9.19600 -8.95789 -8.82541 -8.29471 -8.21605 -7.59160 -5.98044 -4.16768 2.43640 3.21890 3.30977 3.32498 3.46616 3.81979 4.10241 4.30676 4.76759 5.05094 5.11240 5.22062 5.26576 5.36796 5.41426 5.43235 5.44014 5.51897 5.58219 5.66905 5.81548 5.99308 6.03492 6.07350 6.20866 6.34838 6.59477 6.65581 6.76285 6.79882 6.89550 6.92814 7.07785 7.12379 7.21206 7.29659 7.61504 7.71020 7.84020 8.01764 8.35069 8.79396 9.01034 9.45931 9.55261 10.92400 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015543 B = 0.006222 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.012407 B = 4498.875937 C = 5434.807026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C 0.144 3.856 4 N -0.627 5.627 5 C 0.141 3.859 6 C 0.044 3.956 7 O -0.388 6.388 8 C 0.033 3.967 9 C 0.701 3.299 10 O -0.610 6.610 11 N -0.699 5.699 12 C 0.183 3.817 13 C 0.037 3.963 14 C -0.496 4.496 15 H 0.060 0.940 16 C 0.076 3.924 17 N -0.864 5.864 18 Si 0.887 3.113 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.197 4.197 23 C -0.212 4.212 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.397 0.603 37 H 0.017 0.983 38 H 0.108 0.892 39 H 0.262 0.738 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 10.812 2.798 13.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.181 4.181 3 C 0.021 3.979 4 N -0.365 5.365 5 C 0.017 3.983 6 C -0.034 4.034 7 O -0.307 6.307 8 C -0.064 4.064 9 C 0.402 3.598 10 O -0.491 6.491 11 N -0.351 5.351 12 C 0.059 3.941 13 C 0.036 3.964 14 C -0.534 4.534 15 H 0.078 0.922 16 C -0.128 4.128 17 N -0.500 5.500 18 Si 0.715 3.285 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.236 4.236 23 C -0.250 4.250 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.132 0.868 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.232 0.768 37 H 0.036 0.964 38 H 0.126 0.874 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.267 10.590 3.555 13.326 hybrid contribution -0.663 -0.600 -0.716 1.145 sum -7.929 9.990 2.839 13.067 Atomic orbital electron populations 1.23738 0.95716 1.01405 1.02237 1.23619 0.96387 0.99913 0.98198 1.20530 0.92494 0.95062 0.89808 1.46946 1.14032 1.61989 1.13490 1.21210 1.00276 0.89572 0.87276 1.23128 0.95942 0.93841 0.90458 1.87870 1.64736 1.20704 1.57356 1.22685 1.00463 0.82372 1.00852 1.15956 0.81031 0.78574 0.84225 1.90812 1.54935 1.65189 1.38132 1.44985 1.15705 1.64030 1.10371 1.20874 0.78925 0.97526 0.96773 1.19237 0.91578 0.94794 0.90748 1.20488 1.22768 1.13341 0.96786 0.92184 1.24975 0.96101 0.97334 0.94438 1.69891 1.44164 1.29378 1.06526 0.86659 0.81413 0.81544 0.78914 1.20597 1.21144 1.19717 1.22927 0.96737 1.00115 1.03822 1.22948 1.08730 0.93034 1.00246 0.88741 0.88811 0.86758 0.89373 0.90166 0.90490 0.88424 0.92929 0.92719 0.94494 0.94255 0.89950 0.76763 0.96429 0.87413 0.92755 0.91508 0.90252 0.90706 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 14.32 29.01 0.42 -2.14 16 2 C -0.16 -2.55 9.81 -36.03 -0.35 -2.90 16 3 C 0.14 2.22 5.36 -5.20 -0.03 2.19 16 4 N -0.63 -10.94 2.43 -180.80 -0.44 -11.37 16 5 C 0.14 2.06 5.83 -4.04 -0.02 2.04 16 6 C 0.04 0.58 6.28 37.16 0.23 0.82 16 7 O -0.39 -5.08 9.61 -35.23 -0.34 -5.42 16 8 C 0.03 0.33 11.01 101.05 1.11 1.44 16 9 C 0.70 15.27 8.23 -86.92 -0.72 14.55 16 10 O -0.61 -15.21 15.90 5.29 0.08 -15.12 16 11 N -0.70 -15.59 5.03 -65.23 -0.33 -15.92 16 12 C 0.18 4.44 4.63 -4.04 -0.02 4.42 16 13 C 0.04 0.89 2.06 -155.66 -0.32 0.57 16 14 C -0.50 -12.60 8.24 -34.44 -0.28 -12.88 16 15 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 16 C 0.08 1.94 5.26 -17.82 -0.09 1.85 16 17 N -0.86 -23.04 10.33 55.43 0.57 -22.47 16 18 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 C -0.20 -4.37 9.96 -26.69 -0.27 -4.63 16 23 C -0.21 -4.49 9.92 -26.69 -0.26 -4.76 16 24 H 0.09 1.07 7.84 -52.48 -0.41 0.66 16 25 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 26 H 0.11 2.16 8.06 -52.48 -0.42 1.73 16 27 H 0.09 1.20 6.86 -51.93 -0.36 0.84 16 28 H 0.08 1.28 6.49 -51.93 -0.34 0.94 16 29 H 0.08 0.97 8.07 -51.93 -0.42 0.56 16 30 H 0.10 1.52 7.36 -51.93 -0.38 1.14 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.40 8.59 5.68 -40.82 -0.23 8.36 16 37 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 38 H 0.11 2.98 6.00 -51.93 -0.31 2.66 16 39 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 42 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -29.01 356.99 -7.76 -36.77 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -7.06 Total: 12.56 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.61 Total: 0.57 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.19 Total: -49.76 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.25 Total: -20.54 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.01 -7.76 -36.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431200077.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.237 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds