Wall clock time and date at job start Tue Mar 31 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00299 * 2 1 4 4 H 1.09005 * 109.56785 * 29.84404 * 3 2 1 5 5 C 1.53087 * 109.52578 * 269.68944 * 3 2 1 6 6 O 1.42909 * 109.41687 * 297.70222 * 5 3 2 7 7 C 1.42905 * 114.08989 * 298.84195 * 6 5 3 8 8 C 1.53107 * 109.48984 * 61.11380 * 7 6 5 9 9 C 1.53173 * 109.52509 * 150.00096 * 3 2 1 10 10 H 1.09000 * 109.54421 * 182.88663 * 9 3 2 11 11 C 1.53001 * 109.54305 * 303.06337 * 9 3 2 12 12 N 1.46904 * 109.47256 * 184.82284 * 11 9 3 13 13 C 1.46896 * 111.00016 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47181 * 179.97438 * 13 12 11 15 15 H 1.09002 * 109.47070 * 305.00230 * 14 13 12 16 16 C 1.47201 * 109.46938 * 65.00082 * 14 13 12 17 17 N 7.71597 * 129.31693 * 61.17616 * 2 1 3 18 18 C 1.53000 * 109.47233 * 184.99855 * 14 13 12 19 19 C 1.50698 * 109.46984 * 175.00062 * 18 14 13 20 20 H 1.08008 * 120.00253 * 0.02562 * 19 18 14 21 21 C 1.37881 * 120.00032 * 180.02562 * 19 18 14 22 22 N 1.31516 * 119.99811 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99974 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47158 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47265 * 119.99969 * 23 21 19 26 26 H 1.48503 * 109.46681 * 239.99686 * 23 21 19 27 27 H 1.09000 * 109.47042 * 59.99788 * 1 2 3 28 28 H 1.08998 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46959 * 299.99722 * 1 2 3 30 30 H 1.09000 * 109.48145 * 57.67719 * 5 3 2 31 31 H 1.08997 * 109.48475 * 177.71411 * 5 3 2 32 32 H 1.09003 * 109.47683 * 181.13585 * 7 6 5 33 33 H 1.08997 * 109.48531 * 301.15755 * 7 6 5 34 34 H 1.09001 * 109.59869 * 182.57385 * 8 7 6 35 35 H 1.08999 * 109.45369 * 62.37984 * 8 7 6 36 36 H 1.08998 * 109.47638 * 64.82028 * 11 9 3 37 37 H 1.09003 * 109.46856 * 304.81988 * 11 9 3 38 38 H 1.00896 * 110.99668 * 303.95167 * 12 11 9 39 39 H 1.09008 * 109.47165 * 59.99956 * 13 12 11 40 40 H 1.08997 * 109.47437 * 299.99850 * 13 12 11 41 41 H 1.08990 * 109.47170 * 295.00238 * 18 14 13 42 42 H 1.09001 * 109.46952 * 55.00315 * 18 14 13 43 43 H 0.96997 * 119.99784 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3449 2.0013 0.5111 5 6 2.2256 1.7697 -1.4428 6 8 3.1433 0.8884 -2.0935 7 6 4.4380 0.8453 -1.4902 8 6 4.3134 0.3451 -0.0485 9 6 3.3606 1.2645 0.7218 10 1 3.7805 2.2694 0.7670 11 6 3.1663 0.7267 2.1409 12 7 4.4400 0.7961 2.8696 13 6 4.2912 0.2873 4.2396 14 6 5.6355 0.3748 4.9650 15 1 6.3954 -0.1504 4.3864 16 6 6.0215 1.7875 5.1140 17 7 6.3179 2.8780 5.2299 18 6 5.5117 -0.2686 6.3476 19 6 6.8636 -0.2928 7.0132 20 1 7.7248 0.1108 6.5014 21 6 7.0010 -0.8302 8.2755 22 7 5.9522 -1.3212 8.8989 23 14 8.6766 -0.8595 9.1007 24 1 9.6846 -0.2505 8.1962 25 1 8.6177 -0.0880 10.3682 26 1 9.0594 -2.2642 9.3937 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.2737 1.7597 -1.9738 31 1 2.6312 2.7813 -1.4425 32 1 5.0800 0.1694 -2.0552 33 1 4.8728 1.8448 -1.4907 34 1 5.2937 0.3549 0.4279 35 1 3.9180 -0.6707 -0.0496 36 1 2.8305 -0.3092 2.0942 37 1 2.4187 1.3281 2.6581 38 1 5.1664 0.2994 2.3760 39 1 3.9629 -0.7517 4.2077 40 1 3.5515 0.8859 4.7711 41 1 4.8172 0.3098 6.9567 42 1 5.1404 -1.2880 6.2420 43 1 6.0488 -1.6989 9.7870 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573238216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:49 Heat of formation + Delta-G solvation = -82.337102 kcal Electronic energy + Delta-G solvation = -22204.814305 eV Core-core repulsion = 18863.576690 eV Total energy + Delta-G solvation = -3341.237614 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.19223 -37.41132 -37.19711 -35.65406 -33.90633 -32.91883 -31.12374 -30.76806 -27.61685 -26.84036 -25.73630 -23.72282 -22.94265 -22.06503 -21.65582 -20.10256 -17.21081 -16.92875 -16.64269 -16.42583 -16.00269 -15.82172 -15.36791 -14.80137 -14.65267 -14.23718 -14.12697 -14.09126 -13.37732 -13.27997 -12.90080 -12.56826 -12.51166 -12.26513 -11.97319 -11.83761 -11.61897 -11.54704 -11.29468 -11.10806 -11.01682 -10.90888 -10.67910 -10.51564 -10.49654 -10.28185 -10.23702 -9.57233 -9.34495 -9.19056 -8.46722 -8.28202 -6.10096 -4.13149 3.28179 3.36435 3.39912 3.41135 3.73917 3.76686 3.83650 4.11101 4.40745 4.45566 4.53702 4.70335 4.76837 4.93487 4.95827 5.05850 5.08226 5.14112 5.21620 5.26620 5.28159 5.36809 5.43479 5.47002 5.56911 5.67156 5.72327 5.80598 5.85792 5.91438 6.04359 6.17806 6.38982 6.49833 6.81041 7.07042 7.10365 7.42233 7.48817 7.53420 7.85435 8.22815 8.58745 8.91919 9.52407 11.00871 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028917 B = 0.003015 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.051851 B = 9283.625350 C = 9640.534521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.059 3.941 4 H 0.070 0.930 5 C 0.042 3.958 6 O -0.374 6.374 7 C 0.061 3.939 8 C -0.149 4.149 9 C -0.084 4.084 10 H 0.091 0.909 11 C 0.070 3.930 12 N -0.695 5.695 13 C 0.067 3.933 14 C 0.009 3.991 15 H 0.099 0.901 16 C 0.256 3.744 17 N -0.480 5.480 18 C 0.031 3.969 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.283 1.283 27 H 0.038 0.962 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.340 0.660 39 H 0.049 0.951 40 H 0.075 0.925 41 H 0.026 0.974 42 H 0.037 0.963 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 1.838 -20.761 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C 0.000 4.000 4 H 0.088 0.912 5 C -0.036 4.036 6 O -0.292 6.292 7 C -0.016 4.016 8 C -0.187 4.187 9 C -0.103 4.103 10 H 0.109 0.891 11 C -0.060 4.060 12 N -0.327 5.327 13 C -0.063 4.063 14 C -0.013 4.013 15 H 0.116 0.884 16 C -0.061 4.061 17 N -0.157 5.157 18 C -0.008 4.008 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.057 0.943 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.158 0.842 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.085 3.780 -20.398 23.067 hybrid contribution 0.521 -1.022 0.713 1.351 sum -9.564 2.758 -19.685 22.059 Atomic orbital electron populations 1.22799 0.81459 1.02829 0.99651 1.87989 1.19120 1.26636 1.94885 1.22816 0.95412 0.85845 0.95900 0.91179 1.23043 0.94201 0.93066 0.93247 1.87948 1.22302 1.65403 1.53580 1.22599 0.84687 1.00645 0.93676 1.22200 1.00157 1.00737 0.95619 1.21333 0.93597 1.00869 0.94508 0.89113 1.21833 0.92116 0.99848 0.92166 1.60554 1.07411 1.61449 1.03262 1.22053 0.97319 0.98832 0.88084 1.19222 0.96067 0.84301 1.01702 0.88353 1.28864 0.91950 0.94470 0.90784 1.80977 1.10112 1.13453 1.11189 1.19172 0.98274 0.96155 0.87156 1.21188 0.94096 1.39821 1.01265 0.92434 1.24962 0.96741 0.95102 0.97222 1.69949 1.29065 1.40041 1.13983 0.86534 0.84301 0.77699 0.79543 1.19657 1.20973 1.20858 0.94343 0.89614 0.94062 0.89019 0.92308 0.88829 0.93286 0.90378 0.90274 0.94033 0.91382 0.84156 0.93240 0.90603 0.95571 0.94435 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.31 16 2 O -0.37 -3.79 9.08 -42.71 -0.39 -4.18 16 3 C 0.06 0.53 2.43 -26.60 -0.06 0.47 16 4 H 0.07 0.55 7.79 -51.93 -0.40 0.14 16 5 C 0.04 0.36 6.49 37.20 0.24 0.60 16 6 O -0.37 -4.03 10.70 -42.71 -0.46 -4.49 16 7 C 0.06 0.55 6.84 37.21 0.25 0.80 16 8 C -0.15 -1.41 4.97 -26.58 -0.13 -1.54 16 9 C -0.08 -0.82 2.32 -90.44 -0.21 -1.03 16 10 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 11 C 0.07 0.78 4.90 -3.82 -0.02 0.76 16 12 N -0.70 -8.93 6.20 -113.78 -0.71 -9.63 16 13 C 0.07 0.99 5.05 -3.83 -0.02 0.97 16 14 C 0.01 0.17 2.35 -93.40 -0.22 -0.05 16 15 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 16 C 0.26 5.35 13.67 -20.76 -0.28 5.07 16 17 N -0.48 -10.92 18.54 42.15 0.78 -10.14 16 18 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 19 C -0.53 -14.00 8.60 -34.44 -0.30 -14.30 16 20 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 23 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.04 0.24 7.86 -51.93 -0.41 -0.17 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.09 0.68 7.86 -51.93 -0.41 0.27 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.69 6.84 -51.93 -0.36 0.34 16 35 H 0.08 0.85 7.84 -51.93 -0.41 0.44 16 36 H 0.04 0.49 7.77 -51.93 -0.40 0.08 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.34 3.98 7.07 -39.29 -0.28 3.70 16 39 H 0.05 0.69 8.14 -51.92 -0.42 0.26 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 353.56 15.07 5.33 5.33 Total: -1.00 -31.40 353.56 -6.87 -38.27 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.27 Total: -1.89 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 0.12 Total: -4.75 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.81 Total: -44.60 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -0.84 Total: -8.67 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.40 -6.87 -38.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573238216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.071 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds