Wall clock time and date at job start Tue Mar 31 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00299 * 2 1 4 4 H 1.09005 * 109.56785 * 29.84404 * 3 2 1 5 5 C 1.53087 * 109.52578 * 269.68944 * 3 2 1 6 6 O 1.42909 * 109.41687 * 297.70222 * 5 3 2 7 7 C 1.42905 * 114.08989 * 298.84195 * 6 5 3 8 8 C 1.53107 * 109.48984 * 61.11380 * 7 6 5 9 9 C 1.53173 * 109.52509 * 150.00096 * 3 2 1 10 10 H 1.09000 * 109.54421 * 182.88663 * 9 3 2 11 11 C 1.53001 * 109.54305 * 303.06337 * 9 3 2 12 12 N 1.46904 * 109.47256 * 184.82284 * 11 9 3 13 13 C 1.46896 * 111.00016 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47181 * 179.97438 * 13 12 11 15 15 H 1.09002 * 109.47070 * 305.00230 * 14 13 12 16 16 C 1.47201 * 109.46938 * 65.00082 * 14 13 12 17 17 N 7.71597 * 129.31693 * 61.17616 * 2 1 3 18 18 C 1.53000 * 109.47233 * 184.99855 * 14 13 12 19 19 C 1.50698 * 109.46984 * 175.00062 * 18 14 13 20 20 H 1.08008 * 120.00253 * 0.02562 * 19 18 14 21 21 C 1.37881 * 120.00032 * 180.02562 * 19 18 14 22 22 N 1.31516 * 119.99811 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99974 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47158 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47265 * 119.99969 * 23 21 19 26 26 H 1.48503 * 109.46681 * 239.99686 * 23 21 19 27 27 H 1.09000 * 109.47042 * 59.99788 * 1 2 3 28 28 H 1.08998 * 109.47020 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46959 * 299.99722 * 1 2 3 30 30 H 1.09000 * 109.48145 * 57.67719 * 5 3 2 31 31 H 1.08997 * 109.48475 * 177.71411 * 5 3 2 32 32 H 1.09003 * 109.47683 * 181.13585 * 7 6 5 33 33 H 1.08997 * 109.48531 * 301.15755 * 7 6 5 34 34 H 1.09001 * 109.59869 * 182.57385 * 8 7 6 35 35 H 1.08999 * 109.45369 * 62.37984 * 8 7 6 36 36 H 1.08998 * 109.47638 * 64.82028 * 11 9 3 37 37 H 1.09003 * 109.46856 * 304.81988 * 11 9 3 38 38 H 1.00896 * 110.99668 * 303.95167 * 12 11 9 39 39 H 1.09008 * 109.47165 * 59.99956 * 13 12 11 40 40 H 1.08997 * 109.47437 * 299.99850 * 13 12 11 41 41 H 1.08990 * 109.47170 * 295.00238 * 18 14 13 42 42 H 1.09001 * 109.46952 * 55.00315 * 18 14 13 43 43 H 0.96997 * 119.99784 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3449 2.0013 0.5111 5 6 2.2256 1.7697 -1.4428 6 8 3.1433 0.8884 -2.0935 7 6 4.4380 0.8453 -1.4902 8 6 4.3134 0.3451 -0.0485 9 6 3.3606 1.2645 0.7218 10 1 3.7805 2.2694 0.7670 11 6 3.1663 0.7267 2.1409 12 7 4.4400 0.7961 2.8696 13 6 4.2912 0.2873 4.2396 14 6 5.6355 0.3748 4.9650 15 1 6.3954 -0.1504 4.3864 16 6 6.0215 1.7875 5.1140 17 7 6.3179 2.8780 5.2299 18 6 5.5117 -0.2686 6.3476 19 6 6.8636 -0.2928 7.0132 20 1 7.7248 0.1108 6.5014 21 6 7.0010 -0.8302 8.2755 22 7 5.9522 -1.3212 8.8989 23 14 8.6766 -0.8595 9.1007 24 1 9.6846 -0.2505 8.1962 25 1 8.6177 -0.0880 10.3682 26 1 9.0594 -2.2642 9.3937 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.2737 1.7597 -1.9738 31 1 2.6312 2.7813 -1.4425 32 1 5.0800 0.1694 -2.0552 33 1 4.8728 1.8448 -1.4907 34 1 5.2937 0.3549 0.4279 35 1 3.9180 -0.6707 -0.0496 36 1 2.8305 -0.3092 2.0942 37 1 2.4187 1.3281 2.6581 38 1 5.1664 0.2994 2.3760 39 1 3.9629 -0.7517 4.2077 40 1 3.5515 0.8859 4.7711 41 1 4.8172 0.3098 6.9567 42 1 5.1404 -1.2880 6.2420 43 1 6.0488 -1.6989 9.7870 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573238216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:48 Heat of formation + Delta-G solvation = -103.252055 kcal Electronic energy + Delta-G solvation = -22205.721245 eV Core-core repulsion = 18863.576690 eV Total energy + Delta-G solvation = -3342.144555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91011 -38.78187 -37.89301 -36.93556 -35.56437 -34.39429 -32.59108 -31.44113 -28.97339 -27.43489 -27.09354 -24.57018 -24.20888 -23.43193 -22.90757 -20.83858 -18.68587 -18.35364 -17.61541 -17.38225 -16.86082 -16.68750 -16.53953 -16.06900 -15.74111 -15.49583 -15.25261 -14.85838 -14.60637 -14.23917 -14.20405 -14.05699 -13.73465 -13.43267 -13.20362 -13.17522 -13.02202 -12.83732 -12.54090 -12.43968 -12.34798 -12.20489 -11.95097 -11.86281 -11.61853 -11.36954 -11.23114 -11.10098 -10.96843 -10.55867 -10.03717 -9.31880 -8.19648 -6.27840 1.39288 1.42386 1.52829 2.07757 2.14428 2.41587 2.75930 3.10331 3.14898 3.16871 3.35555 3.76012 3.81798 3.95638 4.02307 4.18083 4.34682 4.37163 4.40993 4.49917 4.53273 4.54979 4.61127 4.67861 4.75560 4.78222 4.83649 4.90453 4.93105 4.99946 5.01676 5.09170 5.14070 5.40275 5.47079 5.61855 5.79281 6.02176 6.16017 6.21438 6.41988 6.52264 6.83621 6.94033 7.40910 8.91536 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028917 B = 0.003015 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.051851 B = 9283.625350 C = 9640.534521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.391 6.391 3 C 0.059 3.941 4 H 0.082 0.918 5 C 0.039 3.961 6 O -0.396 6.396 7 C 0.059 3.941 8 C -0.144 4.144 9 C -0.082 4.082 10 H 0.091 0.909 11 C 0.076 3.924 12 N -0.698 5.698 13 C 0.079 3.921 14 C 0.020 3.980 15 H 0.120 0.880 16 C 0.267 3.733 17 N -0.514 5.514 18 C 0.037 3.963 19 C -0.538 4.538 20 H 0.055 0.945 21 C 0.010 3.990 22 N -0.924 5.924 23 Si 0.949 3.051 24 H -0.268 1.268 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.348 0.652 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.000 1.000 42 H 0.035 0.965 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.259 1.897 -21.878 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C 0.000 4.000 4 H 0.100 0.900 5 C -0.038 4.038 6 O -0.315 6.315 7 C -0.018 4.018 8 C -0.182 4.182 9 C -0.100 4.100 10 H 0.109 0.891 11 C -0.053 4.053 12 N -0.331 5.331 13 C -0.051 4.051 14 C -0.002 4.002 15 H 0.138 0.862 16 C -0.050 4.050 17 N -0.191 5.191 18 C -0.002 4.002 19 C -0.576 4.576 20 H 0.073 0.927 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.775 3.225 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.198 1.198 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.168 0.832 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.019 0.981 42 H 0.053 0.947 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.886 3.838 -21.534 24.004 hybrid contribution 0.420 -1.040 1.044 1.533 sum -9.466 2.799 -20.489 22.743 Atomic orbital electron populations 1.22932 0.80240 1.03469 1.00528 1.87953 1.20583 1.27430 1.95044 1.22849 0.95096 0.85766 0.96244 0.89982 1.23176 0.94438 0.93309 0.92883 1.87916 1.23109 1.66105 1.54336 1.22685 0.84377 1.01391 0.93320 1.22140 1.00188 0.99815 0.96077 1.21297 0.94397 1.00721 0.93617 0.89099 1.21792 0.91095 0.99635 0.92783 1.60497 1.08570 1.61484 1.02526 1.21842 0.94773 0.99660 0.88862 1.19172 0.98737 0.82545 0.99713 0.86230 1.29326 0.90944 0.94836 0.89855 1.80978 1.11450 1.14614 1.12099 1.18995 0.96028 0.95946 0.89222 1.21594 0.95437 1.39004 1.01552 0.92669 1.25730 0.99918 0.95111 0.98116 1.70042 1.30845 1.41109 1.14420 0.85630 0.80509 0.78031 0.78320 1.19272 1.21181 1.19828 0.93201 0.89196 0.93412 0.88038 0.91021 0.88053 0.92353 0.89839 0.91715 0.94463 0.91645 0.83237 0.91893 0.91297 0.98144 0.94722 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.39 -7.56 9.08 -141.83 -1.29 -8.85 16 3 C 0.06 0.96 2.43 30.68 0.07 1.04 16 4 H 0.08 1.12 7.79 -2.38 -0.02 1.10 16 5 C 0.04 0.60 6.49 72.01 0.47 1.06 16 6 O -0.40 -7.98 10.70 -141.83 -1.52 -9.49 16 7 C 0.06 0.97 6.84 72.02 0.49 1.46 16 8 C -0.14 -2.52 4.97 30.69 0.15 -2.36 16 9 C -0.08 -1.46 2.32 -10.68 -0.02 -1.48 16 10 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 11 C 0.08 1.58 4.90 86.30 0.42 2.00 16 12 N -0.70 -16.70 6.20 -513.88 -3.19 -19.89 16 13 C 0.08 2.22 5.05 86.30 0.44 2.65 16 14 C 0.02 0.71 2.35 -12.60 -0.03 0.68 16 15 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 16 C 0.27 10.90 13.67 89.44 1.22 12.12 16 17 N -0.51 -23.05 18.54 20.01 0.37 -22.68 16 18 C 0.04 1.70 4.42 29.85 0.13 1.83 16 19 C -0.54 -28.43 8.60 25.60 0.22 -28.21 16 20 H 0.06 2.89 7.59 -2.91 -0.02 2.86 16 21 C 0.01 0.55 5.46 84.66 0.46 1.01 16 22 N -0.92 -53.13 13.29 21.45 0.28 -52.85 16 23 Si 0.95 43.42 29.54 68.60 2.03 45.44 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 H 0.05 0.55 7.86 -2.39 -0.02 0.53 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 0.57 8.09 -2.39 -0.02 0.55 16 30 H 0.10 1.32 7.86 -2.39 -0.02 1.30 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 1.33 6.84 -2.39 -0.02 1.32 16 35 H 0.06 1.33 7.84 -2.39 -0.02 1.31 16 36 H 0.04 0.82 7.77 -2.39 -0.02 0.80 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.35 7.41 7.07 -89.70 -0.63 6.78 16 39 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -65.84 353.56 2.30 -63.54 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.35 Total: 11.41 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.25 Total: -6.63 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -2.53 Total: -95.42 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -2.80 Total: -18.34 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -65.84 2.30 -63.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573238216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.711 kcal (2) G-P(sol) polarization free energy of solvation -65.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds