Wall clock time and date at job start Tue Mar 31 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99741 * 2 1 4 4 C 1.50696 * 110.02107 * 305.83608 * 3 2 1 5 5 O 1.21284 * 120.00155 * 128.64517 * 4 3 2 6 6 N 1.34774 * 119.99893 * 308.64437 * 4 3 2 7 7 C 1.46964 * 120.59567 * 183.96961 * 6 4 3 8 8 C 1.53370 * 108.63531 * 235.24969 * 7 6 4 9 9 N 1.46958 * 108.63513 * 310.57139 * 8 7 6 10 10 C 1.36934 * 120.59856 * 234.95541 * 9 8 7 11 11 H 1.07996 * 120.00222 * 151.45132 * 10 9 8 12 12 C 1.38812 * 119.99776 * 331.44908 * 10 9 8 13 13 N 1.31625 * 120.00117 * 343.00385 * 12 10 9 14 14 Si 1.86799 * 120.00149 * 163.00057 * 12 10 9 15 15 H 1.48494 * 109.47113 * 90.00338 * 14 12 10 16 16 H 1.48505 * 109.47019 * 210.00116 * 14 12 10 17 17 H 1.48502 * 109.46996 * 330.00103 * 14 12 10 18 18 C 1.46964 * 118.80814 * 55.22860 * 9 8 7 19 19 C 1.46962 * 120.59287 * 3.99245 * 6 4 3 20 20 C 1.54274 * 110.03201 * 67.23116 * 3 2 1 21 21 C 1.54962 * 104.16211 * 95.74960 * 20 3 2 22 22 C 1.54886 * 102.77763 * 37.88818 * 21 20 3 23 23 C 1.53878 * 110.03273 * 184.44103 * 3 2 1 24 24 H 1.09006 * 109.47132 * 176.40240 * 1 2 3 25 25 H 1.08992 * 109.47270 * 296.39984 * 1 2 3 26 26 H 1.09005 * 109.46794 * 56.40396 * 1 2 3 27 27 H 1.08998 * 109.60837 * 115.49886 * 7 6 4 28 28 H 1.09004 * 109.74866 * 355.07914 * 7 6 4 29 29 H 1.09003 * 109.60826 * 190.83066 * 8 7 6 30 30 H 1.09000 * 109.60701 * 70.32198 * 8 7 6 31 31 H 0.97001 * 120.00272 * 179.97438 * 13 12 10 32 32 H 1.09004 * 109.61251 * 64.52270 * 18 9 8 33 33 H 1.09003 * 109.60920 * 185.02507 * 18 9 8 34 34 H 1.09000 * 109.61365 * 244.49364 * 19 6 4 35 35 H 1.08994 * 109.61037 * 5.00674 * 19 6 4 36 36 H 1.08999 * 110.48109 * 214.40095 * 20 3 2 37 37 H 1.09002 * 110.48374 * 337.03741 * 20 3 2 38 38 H 1.09001 * 110.72087 * 279.57656 * 21 20 3 39 39 H 1.08998 * 110.92031 * 156.29760 * 21 20 3 40 40 H 1.09003 * 110.48883 * 203.40473 * 22 21 20 41 41 H 1.09004 * 110.48838 * 80.76357 * 22 21 20 42 42 H 1.09006 * 110.02846 * 359.95366 * 23 3 2 43 43 H 1.09003 * 110.03151 * 121.33127 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4627 2.1139 -1.1479 5 8 1.0056 3.2193 -0.9474 6 7 1.4811 1.6086 -2.3972 7 6 1.0311 2.4182 -3.5382 8 6 -0.0681 1.6492 -4.2816 9 7 0.4018 0.2786 -4.5273 10 6 0.4149 -0.2369 -5.7958 11 1 1.1365 -0.9945 -6.0635 12 6 -0.4995 0.2142 -6.7377 13 7 -1.5738 0.8693 -6.3511 14 14 -0.2056 -0.1081 -8.5541 15 1 -0.8280 -1.4016 -8.9343 16 1 -0.8101 0.9865 -9.3552 17 1 1.2549 -0.1653 -8.8166 18 6 0.8518 -0.5310 -3.3863 19 6 1.9510 0.2380 -2.6428 20 6 1.7126 2.0163 1.3365 21 6 2.9746 1.7515 2.1959 22 6 4.1218 1.8523 1.1602 23 6 3.5413 1.2008 -0.1119 24 1 -0.3634 -1.0257 -0.0645 25 1 -0.3633 0.4569 0.9204 26 1 -0.3633 0.5687 -0.8561 27 1 1.8693 2.6002 -4.2108 28 1 0.6351 3.3692 -3.1817 29 1 -0.2787 2.1395 -5.2321 30 1 -0.9717 1.6226 -3.6727 31 1 -2.2126 1.1849 -7.0093 32 1 0.0136 -0.7130 -2.7136 33 1 1.2486 -1.4806 -3.7454 34 1 2.8546 0.2646 -3.2517 35 1 2.1616 -0.2523 -1.6924 36 1 1.5771 3.0861 1.1775 37 1 0.8304 1.5852 1.8097 38 1 2.9388 0.7553 2.6369 39 1 3.0849 2.5112 2.9697 40 1 4.9969 1.3017 1.5054 41 1 4.3759 2.8955 0.9726 42 1 3.8411 0.1541 -0.1654 43 1 3.8883 1.7340 -0.9971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574017340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:16 Heat of formation + Delta-G solvation = -47.797901 kcal Electronic energy + Delta-G solvation = -24331.228749 eV Core-core repulsion = 20991.488867 eV Total energy + Delta-G solvation = -3339.739882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.77338 -37.95291 -36.79834 -35.74508 -33.85244 -31.19156 -30.47804 -29.02651 -28.51415 -26.85572 -26.19419 -23.79902 -22.88379 -21.71414 -20.82382 -19.77982 -18.79522 -17.51860 -16.45588 -16.26849 -15.92234 -15.18863 -14.96417 -14.77947 -14.59293 -13.93881 -13.69583 -13.46947 -13.40150 -13.21601 -13.07968 -12.36852 -12.32528 -11.86135 -11.66622 -11.53845 -11.26949 -11.17298 -11.11174 -10.99218 -10.81095 -10.73781 -10.65307 -10.55654 -10.22867 -10.05216 -9.91476 -9.81059 -8.88880 -8.58524 -8.22282 -6.69260 -5.84408 -3.29538 2.81332 3.34083 3.34861 3.41627 3.43928 3.73511 4.38514 4.45197 4.51050 4.72870 4.97822 5.24990 5.31069 5.32150 5.38262 5.44175 5.47297 5.56326 5.62728 5.70961 5.76843 5.81169 5.85227 5.89265 5.92260 5.98735 6.07452 6.14000 6.18070 6.26748 6.32476 6.42370 6.54156 6.74318 6.88909 7.08803 7.25209 7.53580 7.72854 7.91505 8.37187 8.49823 9.12850 9.75849 10.33083 11.22992 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034894 B = 0.004650 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.228774 B = 6019.804300 C = 6074.522897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.362 6.362 3 C 0.101 3.899 4 C 0.490 3.510 5 O -0.552 6.552 6 N -0.584 5.584 7 C 0.082 3.918 8 C 0.161 3.839 9 N -0.591 5.591 10 C -0.256 4.256 11 H 0.067 0.933 12 C 0.004 3.996 13 N -0.902 5.902 14 Si 0.903 3.097 15 H -0.286 1.286 16 H -0.289 1.289 17 H -0.279 1.279 18 C 0.134 3.866 19 C 0.071 3.929 20 C -0.140 4.140 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.109 4.109 24 H 0.092 0.908 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.021 0.979 31 H 0.255 0.745 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.855 -0.162 14.510 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.281 6.281 3 C 0.058 3.942 4 C 0.276 3.724 5 O -0.431 6.431 6 N -0.316 5.316 7 C -0.041 4.041 8 C 0.035 3.965 9 N -0.314 5.314 10 C -0.386 4.386 11 H 0.084 0.916 12 C -0.195 4.195 13 N -0.546 5.546 14 Si 0.733 3.267 15 H -0.213 1.213 16 H -0.215 1.215 17 H -0.204 1.204 18 C 0.007 3.993 19 C -0.053 4.053 20 C -0.178 4.178 21 C -0.157 4.157 22 C -0.160 4.160 23 C -0.147 4.147 24 H 0.110 0.890 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.580 0.296 14.452 16.809 hybrid contribution -0.262 -0.010 -1.168 1.197 sum 8.318 0.287 13.284 15.676 Atomic orbital electron populations 1.22912 0.80485 1.03296 1.00737 1.87917 1.20380 1.25627 1.94179 1.22407 0.95024 0.83421 0.93340 1.21053 0.79461 0.87272 0.84615 1.90631 1.47091 1.21383 1.83992 1.48101 1.62012 1.15185 1.06264 1.22548 0.99591 0.95154 0.86829 1.21142 0.91143 0.85035 0.99229 1.44011 1.75624 1.09292 1.02487 1.19176 1.11410 1.21620 0.86379 0.91562 1.25081 0.94705 1.00813 0.98880 1.70020 1.09940 1.41800 1.32802 0.86292 0.77836 0.77473 0.85125 1.21339 1.21517 1.20425 1.21260 0.94143 0.93872 0.90019 1.22833 0.98348 0.81872 1.02254 1.22867 0.98672 1.02583 0.93634 1.22453 0.94141 1.01758 0.97308 1.22354 0.98083 1.00927 0.94594 1.22199 0.90442 1.02898 0.99141 0.88980 0.93773 0.93020 0.92171 0.90324 0.88358 0.96079 0.93492 0.95996 0.91715 0.92330 0.87677 0.88825 0.90748 0.91172 0.91325 0.91053 0.91339 0.89366 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.87 101.05 1.00 1.30 16 2 O -0.36 -5.08 7.56 -35.23 -0.27 -5.35 16 3 C 0.10 1.42 0.53 -90.65 -0.05 1.37 16 4 C 0.49 8.73 4.79 -10.99 -0.05 8.68 16 5 O -0.55 -11.35 14.80 5.55 0.08 -11.27 16 6 N -0.58 -10.86 2.79 -172.49 -0.48 -11.35 16 7 C 0.08 1.69 6.59 -3.60 -0.02 1.67 16 8 C 0.16 3.87 5.50 -3.60 -0.02 3.85 16 9 N -0.59 -14.52 2.97 -172.04 -0.51 -15.03 16 10 C -0.26 -6.86 9.57 -15.06 -0.14 -7.01 16 11 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 12 C 0.00 0.11 4.91 -17.43 -0.09 0.03 16 13 N -0.90 -25.83 11.20 55.49 0.62 -25.20 16 14 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.13 2.73 6.67 -3.60 -0.02 2.70 16 19 C 0.07 1.22 5.63 -3.60 -0.02 1.20 16 20 C -0.14 -1.77 5.76 -25.03 -0.14 -1.92 16 21 C -0.12 -1.18 6.91 -24.70 -0.17 -1.35 16 22 C -0.12 -1.20 6.83 -25.08 -0.17 -1.37 16 23 C -0.11 -1.30 5.19 -25.61 -0.13 -1.43 16 24 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.04 0.54 6.52 -51.93 -0.34 0.20 16 26 H 0.05 0.87 6.40 -51.93 -0.33 0.53 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.08 1.62 7.00 -51.93 -0.36 1.26 16 29 H 0.10 2.61 6.02 -51.93 -0.31 2.29 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.02 0.46 7.41 -51.93 -0.38 0.07 16 33 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 1.61 4.01 -51.93 -0.21 1.40 16 36 H 0.09 1.34 6.79 -51.93 -0.35 0.99 16 37 H 0.07 0.91 6.30 -51.93 -0.33 0.58 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 43 H 0.08 0.97 7.67 -51.93 -0.40 0.57 16 LS Contribution 324.23 15.07 4.89 4.89 Total: -1.00 -30.36 324.23 -7.51 -37.87 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.77 Total: 1.46 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -0.04 Total: 7.73 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.37 Total: -51.58 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.18 Total: -16.62 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.36 -7.51 -37.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574017340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.929 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds