Wall clock time and date at job start Tue Mar 31 2020 05:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99741 * 2 1 4 4 C 1.50696 * 110.02107 * 305.83608 * 3 2 1 5 5 O 1.21284 * 120.00155 * 128.64517 * 4 3 2 6 6 N 1.34774 * 119.99893 * 308.64437 * 4 3 2 7 7 C 1.46964 * 120.59567 * 183.96961 * 6 4 3 8 8 C 1.53370 * 108.63531 * 235.24969 * 7 6 4 9 9 N 1.46958 * 108.63513 * 310.57139 * 8 7 6 10 10 C 1.36934 * 120.59856 * 234.95541 * 9 8 7 11 11 H 1.07996 * 120.00222 * 151.45132 * 10 9 8 12 12 C 1.38812 * 119.99776 * 331.44908 * 10 9 8 13 13 N 1.31625 * 120.00117 * 343.00385 * 12 10 9 14 14 Si 1.86799 * 120.00149 * 163.00057 * 12 10 9 15 15 H 1.48494 * 109.47113 * 90.00338 * 14 12 10 16 16 H 1.48505 * 109.47019 * 210.00116 * 14 12 10 17 17 H 1.48502 * 109.46996 * 330.00103 * 14 12 10 18 18 C 1.46964 * 118.80814 * 55.22860 * 9 8 7 19 19 C 1.46962 * 120.59287 * 3.99245 * 6 4 3 20 20 C 1.54274 * 110.03201 * 67.23116 * 3 2 1 21 21 C 1.54962 * 104.16211 * 95.74960 * 20 3 2 22 22 C 1.54886 * 102.77763 * 37.88818 * 21 20 3 23 23 C 1.53878 * 110.03273 * 184.44103 * 3 2 1 24 24 H 1.09006 * 109.47132 * 176.40240 * 1 2 3 25 25 H 1.08992 * 109.47270 * 296.39984 * 1 2 3 26 26 H 1.09005 * 109.46794 * 56.40396 * 1 2 3 27 27 H 1.08998 * 109.60837 * 115.49886 * 7 6 4 28 28 H 1.09004 * 109.74866 * 355.07914 * 7 6 4 29 29 H 1.09003 * 109.60826 * 190.83066 * 8 7 6 30 30 H 1.09000 * 109.60701 * 70.32198 * 8 7 6 31 31 H 0.97001 * 120.00272 * 179.97438 * 13 12 10 32 32 H 1.09004 * 109.61251 * 64.52270 * 18 9 8 33 33 H 1.09003 * 109.60920 * 185.02507 * 18 9 8 34 34 H 1.09000 * 109.61365 * 244.49364 * 19 6 4 35 35 H 1.08994 * 109.61037 * 5.00674 * 19 6 4 36 36 H 1.08999 * 110.48109 * 214.40095 * 20 3 2 37 37 H 1.09002 * 110.48374 * 337.03741 * 20 3 2 38 38 H 1.09001 * 110.72087 * 279.57656 * 21 20 3 39 39 H 1.08998 * 110.92031 * 156.29760 * 21 20 3 40 40 H 1.09003 * 110.48883 * 203.40473 * 22 21 20 41 41 H 1.09004 * 110.48838 * 80.76357 * 22 21 20 42 42 H 1.09006 * 110.02846 * 359.95366 * 23 3 2 43 43 H 1.09003 * 110.03151 * 121.33127 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4627 2.1139 -1.1479 5 8 1.0056 3.2193 -0.9474 6 7 1.4811 1.6086 -2.3972 7 6 1.0311 2.4182 -3.5382 8 6 -0.0681 1.6492 -4.2816 9 7 0.4018 0.2786 -4.5273 10 6 0.4149 -0.2369 -5.7958 11 1 1.1365 -0.9945 -6.0635 12 6 -0.4995 0.2142 -6.7377 13 7 -1.5738 0.8693 -6.3511 14 14 -0.2056 -0.1081 -8.5541 15 1 -0.8280 -1.4016 -8.9343 16 1 -0.8101 0.9865 -9.3552 17 1 1.2549 -0.1653 -8.8166 18 6 0.8518 -0.5310 -3.3863 19 6 1.9510 0.2380 -2.6428 20 6 1.7126 2.0163 1.3365 21 6 2.9746 1.7515 2.1959 22 6 4.1218 1.8523 1.1602 23 6 3.5413 1.2008 -0.1119 24 1 -0.3634 -1.0257 -0.0645 25 1 -0.3633 0.4569 0.9204 26 1 -0.3633 0.5687 -0.8561 27 1 1.8693 2.6002 -4.2108 28 1 0.6351 3.3692 -3.1817 29 1 -0.2787 2.1395 -5.2321 30 1 -0.9717 1.6226 -3.6727 31 1 -2.2126 1.1849 -7.0093 32 1 0.0136 -0.7130 -2.7136 33 1 1.2486 -1.4806 -3.7454 34 1 2.8546 0.2646 -3.2517 35 1 2.1616 -0.2523 -1.6924 36 1 1.5771 3.0861 1.1775 37 1 0.8304 1.5852 1.8097 38 1 2.9388 0.7553 2.6369 39 1 3.0849 2.5112 2.9697 40 1 4.9969 1.3017 1.5054 41 1 4.3759 2.8955 0.9726 42 1 3.8411 0.1541 -0.1654 43 1 3.8883 1.7340 -0.9971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574017340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:15 Heat of formation + Delta-G solvation = -66.584672 kcal Electronic energy + Delta-G solvation = -24332.043405 eV Core-core repulsion = 20991.488867 eV Total energy + Delta-G solvation = -3340.554538 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.06769 -39.33128 -38.39512 -36.77370 -35.62878 -33.10468 -32.14469 -30.12995 -29.55554 -28.53760 -27.35880 -25.57421 -24.55556 -23.18107 -21.67823 -21.28857 -20.20656 -19.06192 -18.07679 -17.49910 -17.29115 -16.70101 -16.51931 -16.15107 -15.73609 -15.50689 -15.30178 -15.20924 -14.83167 -14.81884 -14.12323 -13.93001 -13.41423 -13.34486 -13.19043 -12.77433 -12.73259 -12.61368 -12.51045 -12.32793 -12.14651 -12.05664 -12.02415 -11.88619 -11.87216 -11.72228 -11.47865 -11.16937 -10.62108 -10.25752 -9.85489 -8.67731 -7.90118 -5.39172 1.39660 1.47270 1.49066 1.58463 1.92667 2.49942 2.60555 3.24915 3.26021 3.53880 3.59735 3.63890 4.14741 4.23063 4.25399 4.27508 4.34057 4.37435 4.42910 4.46744 4.57651 4.60141 4.62482 4.73304 4.75998 4.77818 4.85207 4.92723 4.99466 5.03019 5.09207 5.19864 5.22473 5.23261 5.41193 5.46752 5.56630 5.63459 5.93992 6.33488 6.45075 7.03434 7.07790 7.76891 8.30997 9.15252 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034894 B = 0.004650 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.228774 B = 6019.804300 C = 6074.522897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.358 6.358 3 C 0.102 3.898 4 C 0.487 3.513 5 O -0.583 6.583 6 N -0.590 5.590 7 C 0.096 3.904 8 C 0.174 3.826 9 N -0.607 5.607 10 C -0.264 4.264 11 H 0.074 0.926 12 C -0.049 4.049 13 N -0.937 5.937 14 Si 0.970 3.030 15 H -0.284 1.284 16 H -0.295 1.295 17 H -0.268 1.268 18 C 0.130 3.870 19 C 0.086 3.914 20 C -0.142 4.142 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.110 4.110 24 H 0.111 0.889 25 H 0.059 0.941 26 H 0.016 0.984 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.069 0.931 30 H -0.010 1.010 31 H 0.250 0.750 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.140 -1.475 15.920 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.277 6.277 3 C 0.060 3.940 4 C 0.275 3.725 5 O -0.464 6.464 6 N -0.321 5.321 7 C -0.028 4.028 8 C 0.047 3.953 9 N -0.330 5.330 10 C -0.394 4.394 11 H 0.092 0.908 12 C -0.244 4.244 13 N -0.583 5.583 14 Si 0.797 3.203 15 H -0.211 1.211 16 H -0.222 1.222 17 H -0.192 1.192 18 C 0.005 3.995 19 C -0.038 4.038 20 C -0.180 4.180 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.147 4.147 24 H 0.129 0.871 25 H 0.077 0.923 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.008 0.992 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.148 0.852 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.898 -1.044 15.891 19.298 hybrid contribution -1.025 0.390 -1.550 1.899 sum 9.873 -0.654 14.341 17.423 Atomic orbital electron populations 1.22938 0.80402 1.04063 0.99885 1.87904 1.20397 1.25401 1.93968 1.22550 0.96407 0.82986 0.92069 1.21861 0.78365 0.87233 0.85000 1.90613 1.48266 1.23096 1.84461 1.48165 1.62217 1.15552 1.06135 1.22164 0.98495 0.94622 0.87512 1.20819 0.91280 0.85616 0.97562 1.44241 1.75728 1.09842 1.03239 1.19553 1.11101 1.21297 0.87469 0.90814 1.25854 0.94544 1.01150 1.02857 1.70183 1.10950 1.43373 1.33768 0.85252 0.78051 0.76887 0.80077 1.21071 1.22163 1.19232 1.21434 0.94839 0.94376 0.88894 1.22773 0.97069 0.80742 1.03166 1.22879 1.00606 1.01048 0.93426 1.22456 0.92201 1.03005 0.97161 1.22376 0.98806 1.01025 0.93327 1.22283 0.88349 1.04057 1.00047 0.87070 0.92294 0.96563 0.91520 0.90878 0.91240 0.99224 0.94048 0.96578 0.90604 0.91473 0.85159 0.90902 0.90430 0.89890 0.89788 0.88479 0.91599 0.87768 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.87 113.37 1.12 1.72 16 2 O -0.36 -9.18 7.56 -148.98 -1.13 -10.31 16 3 C 0.10 2.70 0.53 -10.81 -0.01 2.69 16 4 C 0.49 17.20 4.79 87.66 0.42 17.62 16 5 O -0.58 -24.37 14.80 -3.04 -0.05 -24.41 16 6 N -0.59 -21.78 2.79 -818.03 -2.28 -24.06 16 7 C 0.10 4.06 6.59 86.42 0.57 4.63 16 8 C 0.17 8.72 5.50 86.42 0.48 9.20 16 9 N -0.61 -30.18 2.97 -698.22 -2.07 -32.25 16 10 C -0.26 -14.18 9.57 84.03 0.80 -13.38 16 11 H 0.07 3.78 7.89 -2.91 -0.02 3.76 16 12 C -0.05 -2.68 4.91 84.86 0.42 -2.26 16 13 N -0.94 -55.38 11.20 21.65 0.24 -55.14 16 14 Si 0.97 44.12 29.59 68.60 2.03 46.15 16 15 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 16 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 18 C 0.13 5.22 6.67 86.42 0.58 5.79 16 19 C 0.09 2.82 5.63 86.42 0.49 3.30 16 20 C -0.14 -3.34 5.76 31.70 0.18 -3.16 16 21 C -0.11 -1.81 6.91 31.91 0.22 -1.59 16 22 C -0.12 -1.89 6.83 31.67 0.22 -1.67 16 23 C -0.11 -2.28 5.19 31.32 0.16 -2.12 16 24 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 25 H 0.06 1.36 6.52 -2.39 -0.02 1.35 16 26 H 0.02 0.53 6.40 -2.38 -0.02 0.52 16 27 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 28 H 0.07 3.13 7.00 -2.39 -0.02 3.12 16 29 H 0.07 3.87 6.02 -2.39 -0.01 3.86 16 30 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.02 0.67 7.41 -2.38 -0.02 0.65 16 33 H 0.08 2.84 7.93 -2.39 -0.02 2.82 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.13 3.65 4.01 -2.39 -0.01 3.64 16 36 H 0.07 2.04 6.79 -2.39 -0.02 2.03 16 37 H 0.08 1.75 6.30 -2.39 -0.02 1.73 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.10 1.85 7.86 -2.38 -0.02 1.83 16 43 H 0.07 1.54 7.67 -2.39 -0.02 1.52 16 Total: -1.00 -66.84 324.23 3.39 -63.45 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.00 Total: 15.77 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 5.64 Total: 20.79 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -4.11 Total: -111.44 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -1.17 Total: -34.72 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -66.84 3.39 -63.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574017340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.137 kcal (2) G-P(sol) polarization free energy of solvation -66.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds