Wall clock time and date at job start Tue Mar 31 2020 05:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 119.99749 * 2 1 4 4 C 1.52997 * 109.47481 * 269.99963 * 3 2 1 5 5 C 1.53782 * 113.61786 * 272.50231 * 4 3 2 6 6 C 1.53780 * 87.07969 * 220.01346 * 5 4 3 7 7 O 1.42904 * 113.68788 * 139.98677 * 6 5 4 8 8 C 1.53781 * 113.61728 * 175.00059 * 4 3 2 9 9 C 1.34774 * 120.00397 * 180.02562 * 2 1 3 10 10 O 1.21590 * 120.00644 * 184.88636 * 9 2 1 11 11 N 1.34774 * 119.99824 * 4.88671 * 9 2 1 12 12 C 1.46507 * 120.00277 * 184.94324 * 11 9 2 13 13 C 1.52994 * 109.47253 * 185.15328 * 12 11 9 14 14 C 1.50697 * 115.54903 * 57.66043 * 13 12 11 15 15 H 1.08006 * 120.00070 * 269.29687 * 14 13 12 16 16 C 1.37877 * 120.00315 * 89.02534 * 14 13 12 17 17 N 1.31513 * 119.99995 * 171.34141 * 16 14 13 18 18 Si 1.86799 * 119.99859 * 351.34568 * 16 14 13 19 19 H 1.48495 * 109.47386 * 93.13855 * 18 16 14 20 20 H 1.48498 * 109.47133 * 213.14148 * 18 16 14 21 21 H 1.48503 * 109.46790 * 333.13895 * 18 16 14 22 22 C 1.53003 * 117.49654 * 203.32681 * 13 12 11 23 23 C 1.53001 * 117.50147 * 271.98645 * 13 12 11 24 24 H 1.09003 * 109.46797 * 264.61625 * 1 2 3 25 25 H 1.08998 * 109.47570 * 24.61878 * 1 2 3 26 26 H 1.09002 * 109.47083 * 144.62467 * 1 2 3 27 27 H 1.08998 * 109.47356 * 30.00584 * 3 2 1 28 28 H 1.09004 * 109.47094 * 150.00344 * 3 2 1 29 29 H 1.09005 * 112.84800 * 43.80364 * 4 3 2 30 30 H 1.08999 * 113.61120 * 334.56510 * 5 4 3 31 31 H 1.09001 * 113.61651 * 105.46581 * 5 4 3 32 32 H 1.08994 * 113.61832 * 270.87729 * 6 5 4 33 33 H 0.96706 * 113.99491 * 82.46476 * 7 6 5 34 34 H 1.09002 * 113.61307 * 254.53071 * 8 4 3 35 35 H 1.08993 * 113.61548 * 25.43657 * 8 4 3 36 36 H 0.97002 * 120.00170 * 4.94897 * 11 9 2 37 37 H 1.09008 * 109.46625 * 65.15258 * 12 11 9 38 38 H 1.08998 * 109.46826 * 305.15850 * 12 11 9 39 39 H 0.97000 * 119.99565 * 180.02562 * 17 16 14 40 40 H 1.09004 * 117.49518 * 215.00341 * 22 13 12 41 41 H 1.08990 * 117.50064 * 0.02562 * 22 13 12 42 42 H 1.09006 * 117.50015 * 359.97438 * 23 13 12 43 43 H 1.08998 * 117.50181 * 144.97097 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4424 5 6 3.7452 1.1344 -2.0438 6 6 3.9633 2.5111 -2.6935 7 8 5.3240 2.9473 -2.6713 8 6 3.1104 3.0959 -1.5553 9 6 2.1389 -1.1671 -0.0005 10 8 3.3515 -1.1691 0.0892 11 7 1.4687 -2.3322 -0.1005 12 6 2.1891 -3.6033 0.0077 13 6 1.2263 -4.7601 -0.2671 14 6 0.5340 -4.7257 -1.6052 15 1 -0.4198 -4.2294 -1.7071 16 6 1.1208 -5.3230 -2.7006 17 7 0.4469 -5.4436 -3.8235 18 14 2.8730 -5.9609 -2.5897 19 1 2.8541 -7.3969 -2.2120 20 1 3.5411 -5.8042 -3.9066 21 1 3.6168 -5.1886 -1.5622 22 6 1.5884 -6.1318 0.3059 23 6 0.4423 -5.3238 0.9197 24 1 -0.3633 -0.0964 1.0232 25 1 -0.3634 0.9342 -0.4281 26 1 -0.3633 -0.8380 -0.5950 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1385 0.5138 29 1 1.5791 1.5884 -2.0832 30 1 4.4979 0.8794 -1.2978 31 1 3.5732 0.3342 -2.7637 32 1 3.5040 2.6074 -3.6772 33 1 5.8655 2.5828 -3.3847 34 1 2.4258 3.8791 -1.8809 35 1 3.6895 3.3771 -0.6759 36 1 0.5094 -2.3291 -0.2441 37 1 2.6003 -3.7035 1.0122 38 1 2.9999 -3.6245 -0.7205 39 1 0.8597 -5.8641 -4.5940 40 1 1.3258 -7.0093 -0.2850 41 1 2.5122 -6.2100 0.8790 42 1 0.6127 -4.8708 1.8964 43 1 -0.5745 -5.6693 0.7328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582642771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:43 Heat of formation + Delta-G solvation = -26.497074 kcal Electronic energy + Delta-G solvation = -22978.347008 eV Core-core repulsion = 19639.530799 eV Total energy + Delta-G solvation = -3338.816209 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04633 -38.94616 -37.14768 -35.60259 -34.53328 -33.29580 -32.13265 -28.61742 -26.88411 -25.92965 -25.60395 -24.81675 -22.41986 -21.67043 -19.59027 -19.44873 -19.16909 -17.72761 -17.40026 -16.45758 -15.91461 -15.59976 -15.17534 -14.83993 -14.45785 -14.18316 -13.75132 -13.60856 -13.27887 -12.99467 -12.75762 -12.46342 -12.39388 -12.32546 -12.13709 -11.88972 -11.65007 -11.39470 -11.15827 -10.78703 -10.64526 -10.52841 -10.24667 -10.14012 -9.80652 -9.77300 -9.56861 -9.16382 -8.65971 -8.58068 -8.47959 -8.01364 -6.17708 -4.20307 3.04483 3.28917 3.39030 3.45838 3.70994 4.15093 4.36486 4.40203 4.59425 4.64124 4.80683 4.87908 4.96450 5.12535 5.21458 5.29954 5.41632 5.45819 5.61093 5.68549 5.70897 5.79447 5.80490 5.94175 6.04365 6.08796 6.09151 6.22694 6.27744 6.43679 6.45236 6.49699 6.70858 6.78823 7.02206 7.09953 7.25078 7.38782 7.57595 7.68660 8.39510 8.54034 8.82283 9.14322 9.46979 10.93559 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.004779 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.619882 B = 5857.255051 C = 6525.796486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.638 5.638 3 C 0.148 3.852 4 C -0.128 4.128 5 C -0.152 4.152 6 C 0.071 3.929 7 O -0.563 6.563 8 C -0.119 4.119 9 C 0.702 3.298 10 O -0.599 6.599 11 N -0.718 5.718 12 C 0.170 3.830 13 C -0.016 4.016 14 C -0.489 4.489 15 H 0.076 0.924 16 C 0.082 3.918 17 N -0.894 5.894 18 Si 0.874 3.126 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.254 1.254 22 C -0.191 4.191 23 C -0.179 4.179 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.376 0.624 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.400 0.600 37 H 0.038 0.962 38 H 0.066 0.934 39 H 0.265 0.735 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 13.899 5.334 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.376 5.376 3 C 0.025 3.975 4 C -0.148 4.148 5 C -0.190 4.190 6 C 0.012 3.988 7 O -0.369 6.369 8 C -0.157 4.157 9 C 0.403 3.597 10 O -0.478 6.478 11 N -0.373 5.373 12 C 0.046 3.954 13 C -0.018 4.018 14 C -0.526 4.526 15 H 0.094 0.906 16 C -0.121 4.121 17 N -0.531 5.531 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.178 1.178 22 C -0.229 4.229 23 C -0.216 4.216 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.224 0.776 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.236 0.764 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.077 14.116 5.753 15.384 hybrid contribution 0.463 -0.840 -0.825 1.265 sum 2.540 13.276 4.928 14.387 Atomic orbital electron populations 1.21688 0.80139 1.03039 1.01424 1.46962 1.06058 1.04995 1.79599 1.21211 0.97705 0.83611 0.95013 1.22785 0.97946 0.95875 0.98152 1.23644 0.97848 0.96568 1.00920 1.23418 0.82356 0.95273 0.97740 1.86491 1.21480 1.73487 1.55408 1.23035 0.97506 0.96382 0.98785 1.15931 0.85272 0.80451 0.78020 1.90848 1.11923 1.86321 1.58737 1.45115 1.11867 1.04178 1.76100 1.21043 0.94313 0.81326 0.98707 1.19616 0.97386 0.89956 0.94803 1.20113 1.06144 1.36884 0.89461 0.90590 1.24931 0.97482 0.94598 0.95082 1.69908 1.36892 1.43413 1.02866 0.86935 0.85682 0.79611 0.77582 1.20416 1.22015 1.17808 1.22921 0.98376 0.96909 1.04683 1.22852 0.96463 1.05664 0.96645 0.92993 0.91133 0.91146 0.90906 0.89662 0.89015 0.88561 0.91598 0.90461 0.77649 0.91049 0.89145 0.76411 0.94397 0.91624 0.92542 0.89145 0.90780 0.90946 0.89454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.23 59.84 0.61 1.52 16 2 N -0.64 -9.30 2.87 -187.35 -0.54 -9.84 16 3 C 0.15 1.85 5.26 -4.04 -0.02 1.83 16 4 C -0.13 -1.52 3.96 -89.81 -0.36 -1.88 16 5 C -0.15 -2.12 7.18 -25.92 -0.19 -2.30 16 6 C 0.07 0.81 5.21 -25.92 -0.14 0.67 16 7 O -0.56 -6.64 13.67 -35.23 -0.48 -7.12 16 8 C -0.12 -1.24 7.47 -25.92 -0.19 -1.43 16 9 C 0.70 13.32 8.27 -86.92 -0.72 12.60 16 10 O -0.60 -13.25 15.59 5.29 0.08 -13.16 16 11 N -0.72 -13.91 5.25 -65.22 -0.34 -14.25 16 12 C 0.17 3.65 5.31 -4.04 -0.02 3.63 16 13 C -0.02 -0.36 0.93 -155.66 -0.14 -0.50 16 14 C -0.49 -12.75 8.93 -34.44 -0.31 -13.05 16 15 H 0.08 2.12 8.06 -52.48 -0.42 1.70 16 16 C 0.08 2.27 5.46 -17.82 -0.10 2.17 16 17 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 18 Si 0.87 21.48 25.23 -169.99 -4.29 17.19 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.25 -6.06 5.35 56.52 0.30 -5.76 16 22 C -0.19 -3.93 7.78 -26.69 -0.21 -4.14 16 23 C -0.18 -3.44 9.94 -26.69 -0.27 -3.70 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.62 8.03 -51.93 -0.42 0.21 16 26 H 0.07 0.86 6.40 -51.93 -0.33 0.53 16 27 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 28 H 0.09 1.23 7.06 -51.93 -0.37 0.86 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.55 7.90 -51.93 -0.41 1.14 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.38 2.96 9.12 45.56 0.42 3.38 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.40 7.22 5.98 -40.82 -0.24 6.98 16 37 H 0.04 0.78 8.11 -51.92 -0.42 0.36 16 38 H 0.07 1.58 6.02 -51.93 -0.31 1.27 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.09 1.96 7.48 -51.93 -0.39 1.57 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -32.24 345.84 -7.98 -40.22 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -6.36 Total: 11.83 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.04 Total: -4.56 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.11 Total: -49.60 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.40 Total: -20.28 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.29 Total: 17.19 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.24 -7.98 -40.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582642771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.722 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds