Wall clock time and date at job start Tue Mar 31 2020 05:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 119.99749 * 2 1 4 4 C 1.52997 * 109.47481 * 269.99963 * 3 2 1 5 5 C 1.53782 * 113.61786 * 272.50231 * 4 3 2 6 6 C 1.53780 * 87.07969 * 220.01346 * 5 4 3 7 7 O 1.42904 * 113.68788 * 139.98677 * 6 5 4 8 8 C 1.53781 * 113.61728 * 175.00059 * 4 3 2 9 9 C 1.34774 * 120.00397 * 180.02562 * 2 1 3 10 10 O 1.21590 * 120.00644 * 184.88636 * 9 2 1 11 11 N 1.34774 * 119.99824 * 4.88671 * 9 2 1 12 12 C 1.46507 * 120.00277 * 184.94324 * 11 9 2 13 13 C 1.52994 * 109.47253 * 185.15328 * 12 11 9 14 14 C 1.50697 * 115.54903 * 57.66043 * 13 12 11 15 15 H 1.08006 * 120.00070 * 269.29687 * 14 13 12 16 16 C 1.37877 * 120.00315 * 89.02534 * 14 13 12 17 17 N 1.31513 * 119.99995 * 171.34141 * 16 14 13 18 18 Si 1.86799 * 119.99859 * 351.34568 * 16 14 13 19 19 H 1.48495 * 109.47386 * 93.13855 * 18 16 14 20 20 H 1.48498 * 109.47133 * 213.14148 * 18 16 14 21 21 H 1.48503 * 109.46790 * 333.13895 * 18 16 14 22 22 C 1.53003 * 117.49654 * 203.32681 * 13 12 11 23 23 C 1.53001 * 117.50147 * 271.98645 * 13 12 11 24 24 H 1.09003 * 109.46797 * 264.61625 * 1 2 3 25 25 H 1.08998 * 109.47570 * 24.61878 * 1 2 3 26 26 H 1.09002 * 109.47083 * 144.62467 * 1 2 3 27 27 H 1.08998 * 109.47356 * 30.00584 * 3 2 1 28 28 H 1.09004 * 109.47094 * 150.00344 * 3 2 1 29 29 H 1.09005 * 112.84800 * 43.80364 * 4 3 2 30 30 H 1.08999 * 113.61120 * 334.56510 * 5 4 3 31 31 H 1.09001 * 113.61651 * 105.46581 * 5 4 3 32 32 H 1.08994 * 113.61832 * 270.87729 * 6 5 4 33 33 H 0.96706 * 113.99491 * 82.46476 * 7 6 5 34 34 H 1.09002 * 113.61307 * 254.53071 * 8 4 3 35 35 H 1.08993 * 113.61548 * 25.43657 * 8 4 3 36 36 H 0.97002 * 120.00170 * 4.94897 * 11 9 2 37 37 H 1.09008 * 109.46625 * 65.15258 * 12 11 9 38 38 H 1.08998 * 109.46826 * 305.15850 * 12 11 9 39 39 H 0.97000 * 119.99565 * 180.02562 * 17 16 14 40 40 H 1.09004 * 117.49518 * 215.00341 * 22 13 12 41 41 H 1.08990 * 117.50064 * 0.02562 * 22 13 12 42 42 H 1.09006 * 117.50015 * 359.97438 * 23 13 12 43 43 H 1.08998 * 117.50181 * 144.97097 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4424 5 6 3.7452 1.1344 -2.0438 6 6 3.9633 2.5111 -2.6935 7 8 5.3240 2.9473 -2.6713 8 6 3.1104 3.0959 -1.5553 9 6 2.1389 -1.1671 -0.0005 10 8 3.3515 -1.1691 0.0892 11 7 1.4687 -2.3322 -0.1005 12 6 2.1891 -3.6033 0.0077 13 6 1.2263 -4.7601 -0.2671 14 6 0.5340 -4.7257 -1.6052 15 1 -0.4198 -4.2294 -1.7071 16 6 1.1208 -5.3230 -2.7006 17 7 0.4469 -5.4436 -3.8235 18 14 2.8730 -5.9609 -2.5897 19 1 2.8541 -7.3969 -2.2120 20 1 3.5411 -5.8042 -3.9066 21 1 3.6168 -5.1886 -1.5622 22 6 1.5884 -6.1318 0.3059 23 6 0.4423 -5.3238 0.9197 24 1 -0.3633 -0.0964 1.0232 25 1 -0.3634 0.9342 -0.4281 26 1 -0.3633 -0.8380 -0.5950 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1385 0.5138 29 1 1.5791 1.5884 -2.0832 30 1 4.4979 0.8794 -1.2978 31 1 3.5732 0.3342 -2.7637 32 1 3.5040 2.6074 -3.6772 33 1 5.8655 2.5828 -3.3847 34 1 2.4258 3.8791 -1.8809 35 1 3.6895 3.3771 -0.6759 36 1 0.5094 -2.3291 -0.2441 37 1 2.6003 -3.7035 1.0122 38 1 2.9999 -3.6245 -0.7205 39 1 0.8597 -5.8641 -4.5940 40 1 1.3258 -7.0093 -0.2850 41 1 2.5122 -6.2100 0.8790 42 1 0.6127 -4.8708 1.8964 43 1 -0.5745 -5.6693 0.7328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582642771.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:42 Heat of formation + Delta-G solvation = -50.260373 kcal Electronic energy + Delta-G solvation = -22979.377462 eV Core-core repulsion = 19639.530799 eV Total energy + Delta-G solvation = -3339.846663 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31632 -40.08115 -38.78946 -36.74496 -35.68384 -34.80829 -34.20510 -29.71767 -28.36822 -27.48940 -26.71275 -26.26866 -23.52035 -23.24529 -21.19599 -20.67995 -20.47144 -19.11147 -18.41272 -18.20439 -17.31792 -16.94716 -16.74428 -16.16341 -15.77589 -15.50331 -15.11136 -14.83474 -14.79284 -14.47097 -14.41044 -14.01855 -13.67606 -13.43780 -13.32048 -13.11172 -12.95419 -12.62792 -12.50812 -12.33200 -12.17902 -11.97145 -11.75718 -11.65855 -11.21951 -11.17336 -10.92438 -10.76169 -10.66463 -10.37022 -9.95625 -9.34854 -8.31744 -6.34872 1.30965 1.37689 1.48381 1.78368 2.24737 2.35196 2.99628 3.04271 3.30063 3.37878 3.61850 3.70149 3.85875 3.98035 4.05549 4.32916 4.35073 4.38879 4.42094 4.48341 4.53404 4.55101 4.72007 4.79405 4.82533 4.86971 4.88072 4.91886 4.93615 5.05139 5.10944 5.22808 5.30879 5.46380 5.50325 5.63706 5.70638 5.73892 6.04683 6.28071 6.71656 6.83509 7.11857 7.34625 7.68277 8.82830 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.004779 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.619882 B = 5857.255051 C = 6525.796486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.632 5.632 3 C 0.145 3.855 4 C -0.122 4.122 5 C -0.165 4.165 6 C 0.076 3.924 7 O -0.578 6.578 8 C -0.106 4.106 9 C 0.694 3.306 10 O -0.637 6.637 11 N -0.720 5.720 12 C 0.181 3.819 13 C -0.041 4.041 14 C -0.474 4.474 15 H 0.047 0.953 16 C 0.032 3.968 17 N -0.941 5.941 18 Si 0.920 3.080 19 H -0.265 1.265 20 H -0.303 1.303 21 H -0.245 1.245 22 C -0.191 4.191 23 C -0.150 4.150 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.113 0.887 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.096 0.904 33 H 0.391 0.609 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.405 0.595 37 H 0.052 0.948 38 H 0.033 0.967 39 H 0.264 0.736 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.895 15.426 6.981 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.368 5.368 3 C 0.023 3.977 4 C -0.142 4.142 5 C -0.203 4.203 6 C 0.017 3.983 7 O -0.386 6.386 8 C -0.143 4.143 9 C 0.396 3.604 10 O -0.519 6.519 11 N -0.375 5.375 12 C 0.056 3.944 13 C -0.042 4.042 14 C -0.512 4.512 15 H 0.065 0.935 16 C -0.167 4.167 17 N -0.580 5.580 18 Si 0.747 3.253 19 H -0.190 1.190 20 H -0.231 1.231 21 H -0.168 1.168 22 C -0.229 4.229 23 C -0.187 4.187 24 H 0.088 0.912 25 H 0.121 0.879 26 H 0.075 0.925 27 H 0.131 0.869 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.113 0.887 33 H 0.241 0.759 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.242 0.758 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.532 15.669 7.419 17.404 hybrid contribution 0.569 -1.267 -1.320 1.917 sum 2.101 14.401 6.099 15.780 Atomic orbital electron populations 1.21923 0.77769 1.04254 1.02678 1.47063 1.07550 1.04168 1.78049 1.21401 0.97292 0.83438 0.95618 1.22768 0.97070 0.96689 0.97637 1.23630 0.98900 0.97477 1.00269 1.23479 0.82645 0.93205 0.98942 1.86452 1.21949 1.73579 1.56592 1.22963 0.97271 0.95917 0.98189 1.16169 0.84954 0.81409 0.77902 1.90821 1.13714 1.87024 1.60388 1.45039 1.12025 1.03940 1.76473 1.20766 0.93349 0.81944 0.98358 1.19460 0.99151 0.91423 0.94152 1.20285 1.04873 1.34683 0.91311 0.93477 1.25596 1.00499 0.95582 0.94999 1.70021 1.38478 1.45761 1.03766 0.86180 0.82079 0.79862 0.77208 1.19044 1.23087 1.16823 1.22984 1.00112 0.95237 1.04571 1.22881 0.95927 1.03415 0.96515 0.91153 0.87906 0.92487 0.86899 0.92030 0.88254 0.91494 0.94352 0.88650 0.75931 0.88235 0.89393 0.75757 0.93021 0.94861 0.92742 0.90415 0.88442 0.87888 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.51 10.23 127.77 1.31 2.82 16 2 N -0.63 -17.51 2.87 -864.93 -2.49 -19.99 16 3 C 0.15 3.38 5.26 86.38 0.45 3.83 16 4 C -0.12 -2.72 3.96 -10.27 -0.04 -2.76 16 5 C -0.16 -4.69 7.18 31.12 0.22 -4.47 16 6 C 0.08 1.64 5.21 31.12 0.16 1.80 16 7 O -0.58 -13.06 13.67 -148.98 -2.04 -15.10 16 8 C -0.11 -1.92 7.47 31.12 0.23 -1.69 16 9 C 0.69 26.26 8.27 179.06 1.48 27.75 16 10 O -0.64 -28.78 15.59 -4.00 -0.06 -28.84 16 11 N -0.72 -27.61 5.25 -478.52 -2.51 -30.12 16 12 C 0.18 7.64 5.31 86.38 0.46 8.10 16 13 C -0.04 -1.75 0.93 -52.93 -0.05 -1.80 16 14 C -0.47 -24.97 8.93 25.60 0.23 -24.74 16 15 H 0.05 2.70 8.06 -2.91 -0.02 2.67 16 16 C 0.03 1.78 5.46 84.65 0.46 2.24 16 17 N -0.94 -56.88 13.96 21.45 0.30 -56.58 16 18 Si 0.92 44.71 25.23 68.60 1.73 46.44 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.30 -15.12 7.11 99.48 0.71 -14.42 16 21 H -0.24 -11.44 5.35 99.48 0.53 -10.91 16 22 C -0.19 -7.43 7.78 30.62 0.24 -7.19 16 23 C -0.15 -5.36 9.94 30.62 0.30 -5.05 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.10 1.40 8.03 -2.39 -0.02 1.39 16 26 H 0.06 1.31 6.40 -2.39 -0.02 1.29 16 27 H 0.11 1.74 8.07 -2.39 -0.02 1.73 16 28 H 0.06 1.76 7.06 -2.38 -0.02 1.74 16 29 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.07 2.29 7.90 -2.39 -0.02 2.27 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.39 5.89 9.12 -74.05 -0.68 5.22 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.68 8.10 -2.39 -0.02 1.66 16 36 H 0.41 14.44 5.98 -92.71 -0.55 13.89 16 37 H 0.05 2.03 8.11 -2.38 -0.02 2.01 16 38 H 0.03 1.61 6.02 -2.39 -0.01 1.60 16 39 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.08 3.23 7.48 -2.38 -0.02 3.21 16 41 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 43 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -72.15 345.84 0.00 -72.15 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: -0.39 Total: 33.21 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 5.46 Total: -1.17 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -4.70 Total: -106.70 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -2.10 Total: -43.94 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.73 Total: 46.44 kcal Total: -72.15 0.00 -72.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582642771.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.894 kcal (2) G-P(sol) polarization free energy of solvation -72.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds