Wall clock time and date at job start Tue Mar 31 2020 05:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99964 * 2 1 4 4 O 1.21279 * 120.00564 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99709 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47054 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47405 * 179.97438 * 6 5 3 8 8 C 1.53003 * 109.47472 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47045 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00196 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99668 * 180.02562 * 9 8 7 12 12 N 1.31508 * 119.99923 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99709 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47068 * 60.00352 * 13 11 9 15 15 H 1.48504 * 109.46808 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47401 * 300.00206 * 13 11 9 17 17 C 1.46500 * 120.00269 * 179.97438 * 2 1 3 18 18 H 1.09002 * 110.43759 * 181.09066 * 17 2 1 19 19 C 1.54628 * 110.59799 * 303.71083 * 17 2 1 20 20 C 1.54476 * 101.76724 * 93.93622 * 19 17 2 21 21 N 1.46768 * 105.47356 * 25.41305 * 20 19 17 22 22 C 1.46500 * 124.34912 * 163.25066 * 21 20 19 23 23 C 1.34424 * 111.29731 * 342.98580 * 21 20 19 24 24 O 1.21281 * 124.93585 * 180.38503 * 23 21 20 25 25 H 1.09000 * 109.47420 * 270.00310 * 1 2 3 26 26 H 1.09004 * 109.47119 * 30.00331 * 1 2 3 27 27 H 1.09003 * 109.46601 * 149.99944 * 1 2 3 28 28 H 1.09003 * 109.46908 * 299.99514 * 5 3 2 29 29 H 1.08994 * 109.47695 * 60.00096 * 5 3 2 30 30 H 1.08996 * 109.47281 * 299.99919 * 6 5 3 31 31 H 1.09000 * 109.47317 * 59.99553 * 6 5 3 32 32 H 1.08996 * 109.47247 * 300.00445 * 7 6 5 33 33 H 1.09007 * 109.46839 * 60.00123 * 7 6 5 34 34 H 1.08995 * 109.47037 * 300.00546 * 8 7 6 35 35 H 1.09002 * 109.46249 * 60.00334 * 8 7 6 36 36 H 0.97005 * 119.99893 * 179.97438 * 12 11 9 37 37 H 1.09008 * 110.96597 * 212.05528 * 19 17 2 38 38 H 1.08999 * 110.97047 * 335.77645 * 19 17 2 39 39 H 1.09003 * 110.24203 * 266.41490 * 20 19 17 40 40 H 1.08999 * 110.24703 * 144.41138 * 20 19 17 41 41 H 1.09004 * 109.46781 * 179.72825 * 22 21 20 42 42 H 1.09004 * 109.47059 * 299.72385 * 22 21 20 43 43 H 1.09000 * 109.46702 * 59.72711 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3795 3.6352 -0.0011 7 6 1.6145 4.9603 -0.0023 8 6 2.6087 6.1233 -0.0022 9 6 1.8551 7.4283 -0.0028 10 1 0.7751 7.4283 -0.0028 11 6 2.5445 8.6224 -0.0033 12 7 3.8595 8.6224 -0.0038 13 14 1.6104 10.2401 -0.0033 14 1 0.7571 10.3190 1.2096 15 1 2.5754 11.3688 -0.0046 16 1 0.7561 10.3184 -1.2155 17 6 2.1975 -1.2687 0.0006 18 1 3.2722 -1.0876 0.0199 19 6 1.7739 -2.1409 1.2050 20 6 0.6668 -3.0206 0.5830 21 7 0.9689 -3.0735 -0.8523 22 6 0.4080 -4.0596 -1.7793 23 6 1.8220 -2.0974 -1.2080 24 8 2.2312 -1.9089 -2.3340 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 0.7590 2.5298 -0.8909 29 1 0.7583 2.5303 0.8891 30 1 3.0061 3.5780 0.8889 31 1 3.0062 3.5771 -0.8910 32 1 0.9881 5.0174 -0.8925 33 1 0.9875 5.0187 0.8875 34 1 3.2347 6.0660 0.8882 35 1 3.2359 6.0650 -0.8918 36 1 4.3446 9.4625 -0.0046 37 1 2.6059 -2.7514 1.5564 38 1 1.3764 -1.5253 2.0119 39 1 -0.3111 -2.5676 0.7462 40 1 0.6957 -4.0224 1.0116 41 1 0.7903 -3.8732 -2.7830 42 1 0.6954 -5.0618 -1.4613 43 1 -0.6789 -3.9772 -1.7833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588377054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:07 Heat of formation + Delta-G solvation = -77.793701 kcal Electronic energy + Delta-G solvation = -22105.315942 eV Core-core repulsion = 18764.275344 eV Total energy + Delta-G solvation = -3341.040598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30745 -39.41048 -36.92364 -35.50231 -34.88900 -32.79290 -32.19882 -29.73935 -28.26739 -27.28675 -26.45638 -25.29352 -22.85149 -21.82807 -20.11679 -19.91645 -19.22014 -17.59803 -17.24945 -16.55179 -16.14744 -16.05378 -15.74927 -15.08419 -14.63765 -14.41327 -14.10484 -13.81097 -13.65524 -13.24060 -13.21288 -13.03845 -12.87430 -12.62395 -12.52684 -12.18871 -11.88837 -11.74113 -11.61987 -11.52877 -10.95000 -10.52115 -10.50226 -10.46059 -10.37624 -9.81335 -9.57973 -9.22024 -9.17975 -8.96575 -8.86807 -8.27657 -5.92463 -3.95026 1.94857 2.48440 2.65540 2.99833 3.37097 3.41433 3.43627 3.88568 4.00622 4.36780 4.45888 4.50915 4.62688 4.77223 4.84060 4.94405 4.95238 5.06593 5.25533 5.27676 5.30533 5.31173 5.40569 5.41902 5.43224 5.45754 5.84915 6.02335 6.14933 6.16540 6.33031 6.57173 6.61476 6.86766 7.02776 7.13185 7.24183 7.76771 7.77440 7.93396 8.08961 8.12879 8.50627 9.12513 9.68355 11.18860 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042731 B = 0.002575 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.109347 B =10872.518180 C =10955.191074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.609 5.609 3 C 0.518 3.482 4 O -0.525 6.525 5 C -0.134 4.134 6 C -0.105 4.105 7 C -0.109 4.109 8 C 0.020 3.980 9 C -0.521 4.521 10 H 0.054 0.946 11 C 0.055 3.945 12 N -0.895 5.895 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.110 3.890 18 H 0.134 0.866 19 C -0.144 4.144 20 C 0.100 3.900 21 N -0.625 5.625 22 C 0.093 3.907 23 C 0.509 3.491 24 O -0.514 6.514 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.998 -28.395 3.156 30.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.345 5.345 3 C 0.308 3.692 4 O -0.399 6.399 5 C -0.174 4.174 6 C -0.143 4.143 7 C -0.147 4.147 8 C -0.017 4.017 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.002 3.998 18 H 0.151 0.849 19 C -0.183 4.183 20 C -0.023 4.023 21 N -0.361 5.361 22 C -0.049 4.049 23 C 0.294 3.706 24 O -0.387 6.387 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.988 -28.212 2.477 30.031 hybrid contribution -0.686 0.720 0.009 0.994 sum -10.674 -27.493 2.485 29.597 Atomic orbital electron populations 1.21909 0.79164 1.03643 1.02180 1.47743 1.06879 1.04419 1.75461 1.21245 0.88320 0.85208 0.74450 1.90706 1.14157 1.86952 1.48132 1.21828 1.00114 0.91498 1.03942 1.21486 0.97048 0.92668 1.03074 1.21645 0.99073 0.93950 1.00043 1.19092 0.94061 0.91229 0.97336 1.21245 0.92925 0.91216 1.50514 0.92822 1.25042 0.94840 0.99211 0.95482 1.69964 1.06048 1.26609 1.50841 0.86671 0.79572 0.83280 0.78525 1.20297 1.21332 1.20298 1.21640 1.00972 0.84159 0.92999 0.84858 1.22994 0.99371 0.98201 0.97702 1.22172 0.98953 1.01297 0.79840 1.48212 1.46429 1.31681 1.09783 1.21582 0.98471 0.90894 0.93941 1.21199 0.78339 0.80908 0.90106 1.90752 1.54946 1.70347 1.22664 0.91889 0.90059 0.91481 0.89006 0.88933 0.91711 0.91718 0.93481 0.93474 0.96583 0.96568 0.92989 0.88679 0.88210 0.90732 0.89952 0.89873 0.91939 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 8.94 59.85 0.54 1.08 16 2 N -0.61 -6.75 2.82 -173.95 -0.49 -7.24 16 3 C 0.52 7.60 7.67 -10.98 -0.08 7.52 16 4 O -0.53 -9.87 15.34 5.56 0.09 -9.79 16 5 C -0.13 -1.83 4.25 -27.88 -0.12 -1.95 16 6 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 7 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 8 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 9 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 10 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 13 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.11 1.16 3.42 -67.94 -0.23 0.92 16 18 H 0.13 1.70 6.98 -51.93 -0.36 1.34 16 19 C -0.14 -0.83 6.48 -25.10 -0.16 -1.00 16 20 C 0.10 0.45 6.44 -3.12 -0.02 0.43 16 21 N -0.62 -4.80 3.05 -180.28 -0.55 -5.35 16 22 C 0.09 0.53 11.14 59.85 0.67 1.20 16 23 C 0.51 5.99 6.77 -10.86 -0.07 5.92 16 24 O -0.51 -8.47 17.35 5.56 0.10 -8.38 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.58 6.44 -51.93 -0.33 0.24 16 27 H 0.07 0.45 5.81 -51.93 -0.30 0.15 16 28 H 0.09 1.12 7.40 -51.93 -0.38 0.73 16 29 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.09 0.45 8.14 -51.92 -0.42 0.03 16 38 H 0.10 0.50 8.08 -51.93 -0.42 0.08 16 39 H 0.07 0.24 7.09 -51.93 -0.37 -0.12 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.08 0.63 7.53 -51.93 -0.39 0.24 16 42 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 349.99 15.07 5.27 5.27 Total: -1.00 -37.47 349.99 -7.33 -44.80 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -7.17 Total: -5.46 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.30 Total: -3.85 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: -0.30 Total: -39.65 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.18 Total: -18.16 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.47 -7.33 -44.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588377054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.989 kcal (2) G-P(sol) polarization free energy of solvation -37.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds