Wall clock time and date at job start Tue Mar 31 2020 05:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 119.99964 * 2 1 4 4 O 1.21279 * 120.00564 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99709 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.47054 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.47405 * 179.97438 * 6 5 3 8 8 C 1.53003 * 109.47472 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47045 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00196 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99668 * 180.02562 * 9 8 7 12 12 N 1.31508 * 119.99923 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99709 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47068 * 60.00352 * 13 11 9 15 15 H 1.48504 * 109.46808 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47401 * 300.00206 * 13 11 9 17 17 C 1.46500 * 120.00269 * 179.97438 * 2 1 3 18 18 H 1.09002 * 110.43759 * 181.09066 * 17 2 1 19 19 C 1.54628 * 110.59799 * 303.71083 * 17 2 1 20 20 C 1.54476 * 101.76724 * 93.93622 * 19 17 2 21 21 N 1.46768 * 105.47356 * 25.41305 * 20 19 17 22 22 C 1.46500 * 124.34912 * 163.25066 * 21 20 19 23 23 C 1.34424 * 111.29731 * 342.98580 * 21 20 19 24 24 O 1.21281 * 124.93585 * 180.38503 * 23 21 20 25 25 H 1.09000 * 109.47420 * 270.00310 * 1 2 3 26 26 H 1.09004 * 109.47119 * 30.00331 * 1 2 3 27 27 H 1.09003 * 109.46601 * 149.99944 * 1 2 3 28 28 H 1.09003 * 109.46908 * 299.99514 * 5 3 2 29 29 H 1.08994 * 109.47695 * 60.00096 * 5 3 2 30 30 H 1.08996 * 109.47281 * 299.99919 * 6 5 3 31 31 H 1.09000 * 109.47317 * 59.99553 * 6 5 3 32 32 H 1.08996 * 109.47247 * 300.00445 * 7 6 5 33 33 H 1.09007 * 109.46839 * 60.00123 * 7 6 5 34 34 H 1.08995 * 109.47037 * 300.00546 * 8 7 6 35 35 H 1.09002 * 109.46249 * 60.00334 * 8 7 6 36 36 H 0.97005 * 119.99893 * 179.97438 * 12 11 9 37 37 H 1.09008 * 110.96597 * 212.05528 * 19 17 2 38 38 H 1.08999 * 110.97047 * 335.77645 * 19 17 2 39 39 H 1.09003 * 110.24203 * 266.41490 * 20 19 17 40 40 H 1.08999 * 110.24703 * 144.41138 * 20 19 17 41 41 H 1.09004 * 109.46781 * 179.72825 * 22 21 20 42 42 H 1.09004 * 109.47059 * 299.72385 * 22 21 20 43 43 H 1.09000 * 109.46702 * 59.72711 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3795 3.6352 -0.0011 7 6 1.6145 4.9603 -0.0023 8 6 2.6087 6.1233 -0.0022 9 6 1.8551 7.4283 -0.0028 10 1 0.7751 7.4283 -0.0028 11 6 2.5445 8.6224 -0.0033 12 7 3.8595 8.6224 -0.0038 13 14 1.6104 10.2401 -0.0033 14 1 0.7571 10.3190 1.2096 15 1 2.5754 11.3688 -0.0046 16 1 0.7561 10.3184 -1.2155 17 6 2.1975 -1.2687 0.0006 18 1 3.2722 -1.0876 0.0199 19 6 1.7739 -2.1409 1.2050 20 6 0.6668 -3.0206 0.5830 21 7 0.9689 -3.0735 -0.8523 22 6 0.4080 -4.0596 -1.7793 23 6 1.8220 -2.0974 -1.2080 24 8 2.2312 -1.9089 -2.3340 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 0.7590 2.5298 -0.8909 29 1 0.7583 2.5303 0.8891 30 1 3.0061 3.5780 0.8889 31 1 3.0062 3.5771 -0.8910 32 1 0.9881 5.0174 -0.8925 33 1 0.9875 5.0187 0.8875 34 1 3.2347 6.0660 0.8882 35 1 3.2359 6.0650 -0.8918 36 1 4.3446 9.4625 -0.0046 37 1 2.6059 -2.7514 1.5564 38 1 1.3764 -1.5253 2.0119 39 1 -0.3111 -2.5676 0.7462 40 1 0.6957 -4.0224 1.0116 41 1 0.7903 -3.8732 -2.7830 42 1 0.6954 -5.0618 -1.4613 43 1 -0.6789 -3.9772 -1.7833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588377054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:07 Heat of formation + Delta-G solvation = -104.032708 kcal Electronic energy + Delta-G solvation = -22106.453751 eV Core-core repulsion = 18764.275344 eV Total energy + Delta-G solvation = -3342.178406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.11404 -40.46490 -37.83032 -36.69140 -36.31304 -34.64919 -33.08499 -31.35760 -28.99727 -27.89861 -27.72872 -26.55124 -24.30970 -22.77788 -21.77636 -20.86785 -20.12487 -18.56701 -18.33249 -18.02933 -17.39864 -17.11899 -16.53156 -16.49781 -16.00098 -15.72502 -14.90010 -14.74222 -14.62106 -14.49824 -14.14337 -13.89185 -13.69486 -13.61932 -13.53887 -13.45634 -13.18569 -13.12106 -12.78728 -12.42985 -12.33344 -12.25806 -12.15444 -12.13201 -11.40573 -11.37356 -11.33477 -11.15917 -10.79277 -10.53799 -9.82468 -9.71977 -8.17748 -6.30203 1.06649 1.40744 1.45155 1.51996 1.52940 1.88873 2.17638 2.42788 3.14817 3.20208 3.38933 3.63287 3.84787 4.00662 4.07363 4.10291 4.17768 4.35388 4.44744 4.56958 4.61277 4.64820 4.69745 4.70407 4.78866 4.85289 4.86146 4.90348 4.96499 4.99731 5.18028 5.31975 5.36105 5.39815 5.48117 5.56985 5.78544 5.88589 5.92847 6.18892 6.25886 6.88221 6.96878 7.06735 7.39384 8.94450 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042731 B = 0.002575 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.109347 B =10872.518180 C =10955.191074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.600 5.600 3 C 0.511 3.489 4 O -0.583 6.583 5 C -0.122 4.122 6 C -0.097 4.097 7 C -0.094 4.094 8 C 0.018 3.982 9 C -0.542 4.542 10 H 0.068 0.932 11 C -0.008 4.008 12 N -0.939 5.939 13 Si 0.971 3.029 14 H -0.262 1.262 15 H -0.286 1.286 16 H -0.265 1.265 17 C 0.100 3.900 18 H 0.098 0.902 19 C -0.131 4.131 20 C 0.099 3.901 21 N -0.613 5.613 22 C 0.087 3.913 23 C 0.500 3.500 24 O -0.578 6.578 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.113 0.887 29 H 0.129 0.871 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.066 0.934 34 H -0.014 1.014 35 H -0.019 1.019 36 H 0.263 0.737 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.090 -29.657 4.762 33.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.335 5.335 3 C 0.302 3.698 4 O -0.462 6.462 5 C -0.161 4.161 6 C -0.136 4.136 7 C -0.131 4.131 8 C -0.019 4.019 9 C -0.580 4.580 10 H 0.086 0.914 11 C -0.205 4.205 12 N -0.579 5.579 13 Si 0.795 3.205 14 H -0.187 1.187 15 H -0.212 1.212 16 H -0.190 1.190 17 C -0.008 4.008 18 H 0.116 0.884 19 C -0.169 4.169 20 C -0.022 4.022 21 N -0.347 5.347 22 C -0.054 4.054 23 C 0.286 3.714 24 O -0.457 6.457 25 H 0.117 0.883 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.132 0.868 29 H 0.147 0.853 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.004 0.996 35 H -0.001 1.001 36 H 0.071 0.929 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.176 -29.550 4.125 33.034 hybrid contribution 0.591 1.005 -0.484 1.262 sum -13.586 -28.546 3.641 31.823 Atomic orbital electron populations 1.22260 0.76329 1.04426 1.04677 1.47763 1.08548 1.03565 1.73599 1.21426 0.87706 0.86596 0.74105 1.90689 1.16570 1.87821 1.51160 1.21704 0.98893 0.88840 1.06682 1.21274 0.97534 0.93794 1.00958 1.21434 0.97774 0.92459 1.01448 1.19058 0.94715 0.93883 0.94242 1.21728 0.93779 0.92151 1.50304 0.91429 1.26119 0.95787 1.03828 0.94787 1.70133 1.08138 1.27818 1.51851 0.85420 0.78147 0.77590 0.79389 1.18679 1.21153 1.18985 1.21729 0.99365 0.84560 0.95107 0.88392 1.23017 1.00359 0.97636 0.95928 1.22498 0.99301 1.03020 0.77364 1.48367 1.44437 1.30253 1.11602 1.21779 0.99779 0.91373 0.92449 1.21427 0.78737 0.81869 0.89378 1.90710 1.57602 1.72371 1.25045 0.88350 0.89520 0.90631 0.86849 0.85315 0.93449 0.94527 0.92255 0.91527 0.99582 1.00055 0.92866 0.87618 0.86561 0.88179 0.86815 0.92461 0.89527 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 8.94 127.77 1.14 1.85 16 2 N -0.60 -12.62 2.82 -822.64 -2.32 -14.94 16 3 C 0.51 15.09 7.67 87.66 0.67 15.77 16 4 O -0.58 -23.41 15.34 -3.03 -0.05 -23.46 16 5 C -0.12 -3.15 4.25 29.85 0.13 -3.02 16 6 C -0.10 -3.65 4.50 30.60 0.14 -3.51 16 7 C -0.09 -3.88 5.15 30.60 0.16 -3.72 16 8 C 0.02 1.01 4.97 29.85 0.15 1.16 16 9 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 10 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 11 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 12 N -0.94 -59.93 13.29 21.45 0.28 -59.64 16 13 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 14 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 C 0.10 2.09 3.42 44.98 0.15 2.24 16 18 H 0.10 2.74 6.98 -2.39 -0.02 2.72 16 19 C -0.13 -1.15 6.48 31.65 0.21 -0.94 16 20 C 0.10 0.46 6.44 86.83 0.56 1.02 16 21 N -0.61 -8.03 3.05 -842.88 -2.57 -10.60 16 22 C 0.09 0.80 11.14 127.77 1.42 2.23 16 23 C 0.50 11.83 6.77 87.89 0.59 12.42 16 24 O -0.58 -20.33 17.35 -3.03 -0.05 -20.38 16 25 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.09 0.91 6.44 -2.39 -0.02 0.89 16 27 H 0.08 0.73 5.81 -2.39 -0.01 0.72 16 28 H 0.11 2.47 7.40 -2.39 -0.02 2.46 16 29 H 0.13 2.41 8.11 -2.39 -0.02 2.39 16 30 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 31 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 34 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 35 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 36 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 37 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.12 0.69 8.08 -2.39 -0.02 0.68 16 39 H 0.10 0.06 7.09 -2.39 -0.02 0.05 16 40 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.06 0.86 7.53 -2.38 -0.02 0.84 16 42 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -89.08 349.99 4.32 -84.75 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 0.98 Total: 3.12 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 6.02 Total: -6.01 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -4.60 Total: -85.19 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.10 Total: -43.84 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -89.08 4.32 -84.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588377054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.278 kcal (2) G-P(sol) polarization free energy of solvation -89.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds