Wall clock time and date at job start Tue Mar 31 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99753 * 2 1 4 4 H 1.09007 * 110.01616 * 331.39449 * 3 2 1 5 5 C 1.53876 * 110.07130 * 92.80990 * 3 2 1 6 6 C 1.54264 * 106.59755 * 119.30660 * 5 3 2 7 7 C 1.54891 * 104.19619 * 23.60918 * 6 5 3 8 8 H 1.08998 * 110.75686 * 80.37211 * 7 6 5 9 9 C 1.50699 * 110.75820 * 203.74319 * 7 6 5 10 10 O 1.21281 * 120.00260 * 89.92268 * 9 7 6 11 11 N 1.34780 * 120.00102 * 269.92420 * 9 7 6 12 12 C 1.46962 * 120.59333 * 184.58490 * 11 9 7 13 13 C 1.53815 * 108.39765 * 124.76005 * 12 11 9 14 14 N 1.46963 * 108.58132 * 49.63585 * 13 12 11 15 15 C 1.36937 * 120.59587 * 124.66775 * 14 13 12 16 16 H 1.07999 * 119.99950 * 331.19082 * 15 14 13 17 17 C 1.38809 * 119.99715 * 151.18634 * 15 14 13 18 18 N 1.31621 * 119.99847 * 161.12540 * 17 15 14 19 19 Si 1.86805 * 120.00341 * 341.12399 * 17 15 14 20 20 H 1.48502 * 109.46731 * 94.98834 * 19 17 15 21 21 H 1.48498 * 109.47047 * 214.98475 * 19 17 15 22 22 H 1.48489 * 109.47082 * 334.98784 * 19 17 15 23 23 C 1.46969 * 118.81020 * 304.64721 * 14 13 12 24 24 C 1.46972 * 120.59294 * 4.86508 * 11 9 7 25 25 C 1.54267 * 110.03296 * 210.00245 * 3 2 1 26 26 H 1.09005 * 109.46819 * 299.99732 * 1 2 3 27 27 H 1.08997 * 109.47312 * 59.99812 * 1 2 3 28 28 H 1.08997 * 109.46615 * 180.02562 * 1 2 3 29 29 H 1.09001 * 110.03085 * 238.59043 * 5 3 2 30 30 H 1.08994 * 110.03431 * 359.97438 * 5 3 2 31 31 H 1.09002 * 110.48760 * 142.28541 * 6 5 3 32 32 H 1.08995 * 110.48692 * 264.93071 * 6 5 3 33 33 H 1.09003 * 109.60566 * 244.53829 * 12 11 9 34 34 H 1.08997 * 109.61196 * 5.05283 * 12 11 9 35 35 H 1.08993 * 109.73919 * 289.84684 * 13 12 11 36 36 H 1.08999 * 109.52953 * 169.30295 * 13 12 11 37 37 H 0.97002 * 120.00514 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.61281 * 295.48321 * 23 14 13 39 39 H 1.08999 * 109.60739 * 174.97386 * 23 14 13 40 40 H 1.09001 * 109.60587 * 354.94179 * 24 11 9 41 41 H 1.08993 * 109.61060 * 115.45994 * 24 11 9 42 42 H 1.08999 * 110.48269 * 335.73266 * 25 3 2 43 43 H 1.08994 * 110.48767 * 98.37583 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3405 2.0121 -0.4904 5 6 2.2897 1.7591 1.4436 6 6 3.8114 1.9913 1.5457 7 6 4.2535 2.2600 0.0858 8 1 4.0437 3.2914 -0.1977 9 6 5.7149 1.9411 -0.0970 10 8 6.0555 0.8246 -0.4261 11 7 6.6437 2.8967 0.1052 12 6 8.0632 2.6294 -0.1658 13 6 8.5789 3.6948 -1.1480 14 7 8.1910 5.0207 -0.6468 15 6 9.1346 5.9916 -0.4413 16 1 10.1476 5.7152 -0.1887 17 6 8.7890 7.3309 -0.5577 18 7 9.5513 8.2568 -0.0155 19 14 7.2420 7.8194 -1.4839 20 1 6.1202 7.9791 -0.5241 21 1 7.4739 9.1037 -2.1924 22 1 6.9021 6.7637 -2.4713 23 6 6.7721 5.2862 -0.3706 24 6 6.2557 4.2227 0.6064 25 6 3.3718 1.2778 -0.7247 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.7557 2.6858 1.6537 30 1 1.9817 0.9837 2.1449 31 1 4.0240 2.8562 2.1740 32 1 4.3073 1.1031 1.9371 33 1 8.6291 2.6810 0.7644 34 1 8.1710 1.6390 -0.6081 35 1 8.1386 3.5324 -2.1318 36 1 9.6650 3.6326 -1.2158 37 1 9.3097 9.1928 -0.0965 38 1 6.2032 5.2371 -1.2990 39 1 6.6650 6.2751 0.0751 40 1 5.1696 4.2847 0.6741 41 1 6.6960 4.3851 1.5902 42 1 3.7967 0.2744 -0.6999 43 1 3.2636 1.6220 -1.7532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597274055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:26 Heat of formation + Delta-G solvation = -52.502232 kcal Electronic energy + Delta-G solvation = -23261.140743 eV Core-core repulsion = 19921.196865 eV Total energy + Delta-G solvation = -3339.943877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.28999 -38.73607 -37.14442 -35.76741 -33.97835 -31.63968 -30.87125 -29.11878 -28.79095 -27.10418 -26.29735 -23.82271 -23.28173 -22.03565 -20.60698 -20.18939 -18.64756 -17.72141 -16.73919 -16.29036 -16.20494 -15.64440 -15.16446 -15.02297 -14.54778 -14.45739 -14.24662 -13.84917 -13.65280 -13.47760 -12.86107 -12.60515 -12.40106 -12.19073 -12.11980 -11.90869 -11.78281 -11.56717 -11.21180 -11.17619 -11.06161 -10.74415 -10.66929 -10.41752 -10.32160 -10.11062 -9.80100 -9.59725 -9.41845 -8.90207 -8.33216 -7.01723 -6.03397 -3.42635 2.81424 3.20071 3.23118 3.41222 3.42986 3.62311 4.29551 4.38529 4.42913 4.70664 4.81165 4.82822 5.04436 5.05586 5.14047 5.22794 5.26342 5.27744 5.33618 5.37593 5.48595 5.55555 5.57071 5.69651 5.74057 5.76256 5.83461 5.91187 5.99354 6.05238 6.08450 6.15875 6.21910 6.36180 6.45862 6.67394 6.88893 7.03271 7.73800 7.85634 8.24299 8.43463 8.82628 9.61157 9.98059 11.12374 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026716 B = 0.004274 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.792807 B = 6549.924247 C = 7104.440522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.084 3.916 4 H 0.065 0.935 5 C -0.145 4.145 6 C -0.105 4.105 7 C -0.117 4.117 8 H 0.100 0.900 9 C 0.521 3.479 10 O -0.552 6.552 11 N -0.598 5.598 12 C 0.094 3.906 13 C 0.136 3.864 14 N -0.605 5.605 15 C -0.263 4.263 16 H 0.087 0.913 17 C 0.024 3.976 18 N -0.907 5.907 19 Si 0.882 3.118 20 H -0.288 1.288 21 H -0.301 1.301 22 H -0.269 1.269 23 C 0.112 3.888 24 C 0.088 3.912 25 C -0.104 4.104 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.028 0.972 36 H 0.076 0.924 37 H 0.264 0.736 38 H 0.031 0.969 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.751 -11.608 1.972 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C 0.026 3.974 4 H 0.083 0.917 5 C -0.182 4.182 6 C -0.143 4.143 7 C -0.138 4.138 8 H 0.118 0.882 9 C 0.308 3.692 10 O -0.430 6.430 11 N -0.330 5.330 12 C -0.030 4.030 13 C 0.009 3.991 14 N -0.329 5.329 15 C -0.391 4.391 16 H 0.105 0.895 17 C -0.175 4.175 18 N -0.549 5.549 19 Si 0.713 3.287 20 H -0.216 1.216 21 H -0.230 1.230 22 H -0.194 1.194 23 C -0.014 4.014 24 C -0.037 4.037 25 C -0.142 4.142 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.115 0.885 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.376 -12.163 1.815 20.480 hybrid contribution -1.077 0.921 -0.445 1.485 sum -17.453 -11.241 1.370 20.805 Atomic orbital electron populations 1.22777 0.81480 1.02602 0.99826 1.87985 1.19282 1.27808 1.94942 1.22845 0.94934 0.84342 0.95267 0.91682 1.22671 0.96497 1.01706 0.97371 1.22238 0.95250 1.02544 0.94307 1.22257 0.92263 1.01326 0.97974 0.88194 1.20311 0.87526 0.84418 0.76900 1.90642 1.82092 1.21620 1.48678 1.48031 1.07740 1.12859 1.64404 1.22320 0.80075 1.00160 1.00420 1.21412 0.99183 0.84694 0.93813 1.44283 1.02420 1.10740 1.75477 1.18942 0.92954 0.85096 1.42114 0.89493 1.25326 0.97585 0.95665 0.98900 1.69812 1.39621 1.00628 1.44886 0.86945 0.83311 0.77414 0.81052 1.21561 1.22956 1.19446 1.21743 0.86438 0.97256 0.96006 1.22460 0.99432 0.82716 0.99084 1.22320 0.92444 1.01469 0.97990 0.94168 0.94117 0.89792 0.91116 0.90446 0.90674 0.90684 0.91503 0.89641 0.95393 0.90580 0.92642 0.95070 0.89999 0.90433 0.90764 0.88485 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.33 16 2 O -0.38 -4.32 10.26 -35.23 -0.36 -4.69 16 3 C 0.08 0.87 3.38 -25.61 -0.09 0.78 16 4 H 0.07 0.57 7.80 -51.92 -0.41 0.16 16 5 C -0.14 -1.36 6.61 -25.61 -0.17 -1.53 16 6 C -0.11 -1.15 6.22 -25.07 -0.16 -1.30 16 7 C -0.12 -1.47 2.30 -89.78 -0.21 -1.68 16 8 H 0.10 1.14 6.48 -51.93 -0.34 0.80 16 9 C 0.52 8.51 6.88 -10.98 -0.08 8.43 16 10 O -0.55 -10.61 15.23 5.56 0.08 -10.53 16 11 N -0.60 -10.10 2.94 -172.21 -0.51 -10.61 16 12 C 0.09 1.64 6.61 -3.37 -0.02 1.62 16 13 C 0.14 2.65 6.69 -3.37 -0.02 2.63 16 14 N -0.61 -13.86 2.73 -171.77 -0.47 -14.32 16 15 C -0.26 -7.08 10.03 -15.06 -0.15 -7.24 16 16 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 17 C 0.02 0.68 5.26 -17.43 -0.09 0.59 16 18 N -0.91 -27.01 13.97 55.49 0.78 -26.24 16 19 Si 0.88 21.41 24.36 -169.99 -4.14 17.27 16 20 H -0.29 -6.59 6.72 56.52 0.38 -6.21 16 21 H -0.30 -7.53 7.11 56.52 0.40 -7.12 16 22 H -0.27 -6.47 6.42 56.52 0.36 -6.11 16 23 C 0.11 2.28 4.34 -3.59 -0.02 2.26 16 24 C 0.09 1.43 6.46 -3.59 -0.02 1.40 16 25 C -0.10 -1.28 5.85 -25.07 -0.15 -1.43 16 26 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.04 0.27 8.10 -51.93 -0.42 -0.15 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.73 7.96 -51.93 -0.41 0.31 16 31 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 32 H 0.07 0.91 8.04 -51.93 -0.42 0.50 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.09 1.46 7.02 -51.93 -0.36 1.10 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 1.44 7.93 -51.93 -0.41 1.03 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.03 0.64 7.04 -51.93 -0.37 0.27 16 39 H 0.08 1.79 4.47 -51.93 -0.23 1.55 16 40 H 0.08 1.01 5.37 -51.93 -0.28 0.73 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.10 1.43 7.17 -51.93 -0.37 1.05 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 330.00 15.07 4.97 4.97 Total: -1.00 -31.94 330.00 -6.73 -38.67 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.01 Total: -0.40 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -0.07 Total: 5.87 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.20 Total: -51.17 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.28 Total: -15.22 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.14 Total: 17.27 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.94 -6.73 -38.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597274055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.833 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds