Wall clock time and date at job start Tue Mar 31 2020 05:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99753 * 2 1 4 4 H 1.09007 * 110.01616 * 331.39449 * 3 2 1 5 5 C 1.53876 * 110.07130 * 92.80990 * 3 2 1 6 6 C 1.54264 * 106.59755 * 119.30660 * 5 3 2 7 7 C 1.54891 * 104.19619 * 23.60918 * 6 5 3 8 8 H 1.08998 * 110.75686 * 80.37211 * 7 6 5 9 9 C 1.50699 * 110.75820 * 203.74319 * 7 6 5 10 10 O 1.21281 * 120.00260 * 89.92268 * 9 7 6 11 11 N 1.34780 * 120.00102 * 269.92420 * 9 7 6 12 12 C 1.46962 * 120.59333 * 184.58490 * 11 9 7 13 13 C 1.53815 * 108.39765 * 124.76005 * 12 11 9 14 14 N 1.46963 * 108.58132 * 49.63585 * 13 12 11 15 15 C 1.36937 * 120.59587 * 124.66775 * 14 13 12 16 16 H 1.07999 * 119.99950 * 331.19082 * 15 14 13 17 17 C 1.38809 * 119.99715 * 151.18634 * 15 14 13 18 18 N 1.31621 * 119.99847 * 161.12540 * 17 15 14 19 19 Si 1.86805 * 120.00341 * 341.12399 * 17 15 14 20 20 H 1.48502 * 109.46731 * 94.98834 * 19 17 15 21 21 H 1.48498 * 109.47047 * 214.98475 * 19 17 15 22 22 H 1.48489 * 109.47082 * 334.98784 * 19 17 15 23 23 C 1.46969 * 118.81020 * 304.64721 * 14 13 12 24 24 C 1.46972 * 120.59294 * 4.86508 * 11 9 7 25 25 C 1.54267 * 110.03296 * 210.00245 * 3 2 1 26 26 H 1.09005 * 109.46819 * 299.99732 * 1 2 3 27 27 H 1.08997 * 109.47312 * 59.99812 * 1 2 3 28 28 H 1.08997 * 109.46615 * 180.02562 * 1 2 3 29 29 H 1.09001 * 110.03085 * 238.59043 * 5 3 2 30 30 H 1.08994 * 110.03431 * 359.97438 * 5 3 2 31 31 H 1.09002 * 110.48760 * 142.28541 * 6 5 3 32 32 H 1.08995 * 110.48692 * 264.93071 * 6 5 3 33 33 H 1.09003 * 109.60566 * 244.53829 * 12 11 9 34 34 H 1.08997 * 109.61196 * 5.05283 * 12 11 9 35 35 H 1.08993 * 109.73919 * 289.84684 * 13 12 11 36 36 H 1.08999 * 109.52953 * 169.30295 * 13 12 11 37 37 H 0.97002 * 120.00514 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.61281 * 295.48321 * 23 14 13 39 39 H 1.08999 * 109.60739 * 174.97386 * 23 14 13 40 40 H 1.09001 * 109.60587 * 354.94179 * 24 11 9 41 41 H 1.08993 * 109.61060 * 115.45994 * 24 11 9 42 42 H 1.08999 * 110.48269 * 335.73266 * 25 3 2 43 43 H 1.08994 * 110.48767 * 98.37583 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3405 2.0121 -0.4904 5 6 2.2897 1.7591 1.4436 6 6 3.8114 1.9913 1.5457 7 6 4.2535 2.2600 0.0858 8 1 4.0437 3.2914 -0.1977 9 6 5.7149 1.9411 -0.0970 10 8 6.0555 0.8246 -0.4261 11 7 6.6437 2.8967 0.1052 12 6 8.0632 2.6294 -0.1658 13 6 8.5789 3.6948 -1.1480 14 7 8.1910 5.0207 -0.6468 15 6 9.1346 5.9916 -0.4413 16 1 10.1476 5.7152 -0.1887 17 6 8.7890 7.3309 -0.5577 18 7 9.5513 8.2568 -0.0155 19 14 7.2420 7.8194 -1.4839 20 1 6.1202 7.9791 -0.5241 21 1 7.4739 9.1037 -2.1924 22 1 6.9021 6.7637 -2.4713 23 6 6.7721 5.2862 -0.3706 24 6 6.2557 4.2227 0.6064 25 6 3.3718 1.2778 -0.7247 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 1.7557 2.6858 1.6537 30 1 1.9817 0.9837 2.1449 31 1 4.0240 2.8562 2.1740 32 1 4.3073 1.1031 1.9371 33 1 8.6291 2.6810 0.7644 34 1 8.1710 1.6390 -0.6081 35 1 8.1386 3.5324 -2.1318 36 1 9.6650 3.6326 -1.2158 37 1 9.3097 9.1928 -0.0965 38 1 6.2032 5.2371 -1.2990 39 1 6.6650 6.2751 0.0751 40 1 5.1696 4.2847 0.6741 41 1 6.6960 4.3851 1.5902 42 1 3.7967 0.2744 -0.6999 43 1 3.2636 1.6220 -1.7532 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597274055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:25 Heat of formation + Delta-G solvation = -74.211528 kcal Electronic energy + Delta-G solvation = -23262.082128 eV Core-core repulsion = 19921.196865 eV Total energy + Delta-G solvation = -3340.885263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49506 -39.69889 -38.60503 -36.68097 -35.65312 -33.54130 -32.39542 -30.09527 -29.67928 -28.62264 -27.00767 -25.44995 -24.83046 -23.35844 -21.58655 -21.35899 -20.02330 -19.04911 -18.12551 -17.58184 -17.18354 -17.08552 -16.50069 -16.08644 -15.89749 -15.82025 -15.44776 -15.18883 -14.79792 -14.63521 -14.39248 -14.20387 -13.92995 -13.64574 -13.09877 -12.99319 -12.80875 -12.58882 -12.51038 -12.29071 -12.20306 -12.14080 -12.03402 -11.82146 -11.73877 -11.53488 -11.38771 -10.86073 -10.72753 -10.49602 -9.89482 -8.86184 -8.16424 -5.53014 1.29620 1.45052 1.52821 1.56166 1.95810 2.41181 2.88584 3.06328 3.27375 3.34572 3.53599 3.78449 3.93710 4.06992 4.12977 4.27471 4.31508 4.33563 4.38368 4.39987 4.49127 4.53197 4.54955 4.61859 4.64728 4.67034 4.74434 4.78990 4.86162 4.92532 4.95053 5.06071 5.12048 5.12822 5.21862 5.25737 5.49903 5.84248 6.11338 6.36112 6.44635 6.86747 7.13984 7.57087 7.97500 9.03208 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026716 B = 0.004274 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.792807 B = 6549.924247 C = 7104.440522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.085 3.915 4 H 0.088 0.912 5 C -0.138 4.138 6 C -0.103 4.103 7 C -0.113 4.113 8 H 0.123 0.877 9 C 0.519 3.481 10 O -0.586 6.586 11 N -0.603 5.603 12 C 0.103 3.897 13 C 0.136 3.864 14 N -0.619 5.619 15 C -0.254 4.254 16 H 0.051 0.949 17 C -0.033 4.033 18 N -0.957 5.957 19 Si 0.948 3.052 20 H -0.260 1.260 21 H -0.314 1.314 22 H -0.263 1.263 23 C 0.105 3.895 24 C 0.098 3.902 25 C -0.106 4.106 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.263 0.737 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.196 -11.660 2.138 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.027 3.973 4 H 0.106 0.894 5 C -0.176 4.176 6 C -0.141 4.141 7 C -0.134 4.134 8 H 0.141 0.859 9 C 0.309 3.691 10 O -0.466 6.466 11 N -0.334 5.334 12 C -0.021 4.021 13 C 0.010 3.990 14 N -0.344 5.344 15 C -0.383 4.383 16 H 0.069 0.931 17 C -0.228 4.228 18 N -0.602 5.602 19 Si 0.777 3.223 20 H -0.186 1.186 21 H -0.243 1.243 22 H -0.188 1.188 23 C -0.021 4.021 24 C -0.026 4.026 25 C -0.144 4.144 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.139 0.861 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.864 -12.255 1.991 23.425 hybrid contribution 0.071 0.811 -0.507 0.959 sum -19.793 -11.443 1.484 22.911 Atomic orbital electron populations 1.22963 0.79711 1.03583 1.00958 1.87950 1.21320 1.28601 1.95131 1.22883 0.94063 0.84578 0.95768 0.89440 1.22657 0.95339 1.02892 0.96664 1.22260 0.96255 1.02473 0.93137 1.22327 0.89179 1.02492 0.99367 0.85875 1.21007 0.88919 0.83624 0.75570 1.90632 1.82879 1.23096 1.50021 1.48118 1.07418 1.13353 1.64538 1.22096 0.80995 0.99317 0.99726 1.21465 0.99274 0.83844 0.94385 1.44389 1.03064 1.10814 1.76155 1.18836 0.92609 0.86211 1.40635 0.93080 1.25969 1.01333 0.95565 0.99907 1.69952 1.42349 1.00926 1.46995 0.85879 0.80326 0.76248 0.79877 1.18620 1.24293 1.18793 1.21851 0.84847 0.98128 0.97262 1.22391 1.01858 0.80843 0.97505 1.22302 0.93707 0.99618 0.98775 0.92840 0.93081 0.89075 0.88466 0.90651 0.88802 0.92699 0.91618 0.89361 0.95132 0.90940 0.92801 0.94261 0.91240 0.86147 0.90819 0.91677 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.85 113.37 1.23 1.53 16 2 O -0.41 -8.47 10.26 -148.98 -1.53 -10.00 16 3 C 0.08 1.48 3.38 31.32 0.11 1.59 16 4 H 0.09 1.14 7.80 -2.38 -0.02 1.13 16 5 C -0.14 -2.06 6.61 31.32 0.21 -1.85 16 6 C -0.10 -1.91 6.22 31.67 0.20 -1.71 16 7 C -0.11 -2.48 2.30 -10.25 -0.02 -2.50 16 8 H 0.12 2.17 6.48 -2.39 -0.02 2.15 16 9 C 0.52 15.96 6.88 87.66 0.60 16.56 16 10 O -0.59 -22.21 15.23 -3.03 -0.05 -22.25 16 11 N -0.60 -19.04 2.94 -817.14 -2.40 -21.45 16 12 C 0.10 3.51 6.61 86.57 0.57 4.08 16 13 C 0.14 5.26 6.69 86.57 0.58 5.84 16 14 N -0.62 -27.88 2.73 -697.35 -1.90 -29.78 16 15 C -0.25 -13.87 10.03 84.03 0.84 -13.03 16 16 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 17 C -0.03 -1.84 5.26 84.86 0.45 -1.39 16 18 N -0.96 -58.27 13.97 21.65 0.30 -57.97 16 19 Si 0.95 43.71 24.36 68.60 1.67 45.38 16 20 H -0.26 -10.76 6.72 99.48 0.67 -10.09 16 21 H -0.31 -15.01 7.11 99.48 0.71 -14.31 16 22 H -0.26 -11.73 6.42 99.48 0.64 -11.09 16 23 C 0.10 3.97 4.34 86.41 0.38 4.34 16 24 C 0.10 2.86 6.46 86.41 0.56 3.41 16 25 C -0.11 -2.39 5.85 31.67 0.19 -2.20 16 26 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.05 0.54 8.10 -2.39 -0.02 0.52 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.19 7.96 -2.39 -0.02 1.17 16 31 H 0.09 1.39 8.03 -2.39 -0.02 1.37 16 32 H 0.05 1.24 8.04 -2.39 -0.02 1.22 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.09 2.98 7.02 -2.39 -0.02 2.96 16 35 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.07 2.79 7.93 -2.39 -0.02 2.77 16 37 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.04 1.45 7.04 -2.39 -0.02 1.43 16 39 H 0.07 2.83 4.47 -2.39 -0.01 2.82 16 40 H 0.12 2.49 5.37 -2.39 -0.01 2.48 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.06 1.90 7.17 -2.39 -0.02 1.88 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -70.74 330.00 2.85 -67.88 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.88 Total: 13.52 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 5.88 Total: 14.67 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -4.01 Total: -109.20 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.57 Total: -32.25 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.67 Total: 45.38 kcal Total: -70.74 2.85 -67.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597274055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.327 kcal (2) G-P(sol) polarization free energy of solvation -70.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds