Wall clock time and date at job start Tue Mar 31 2020 05:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.47191 * 119.78592 * 2 1 4 4 C 1.52997 * 108.66303 * 108.03549 * 3 2 1 5 5 C 1.51778 * 110.87854 * 86.46630 * 4 3 2 6 6 C 1.51791 * 113.81495 * 292.99917 * 5 4 3 7 7 C 1.53064 * 110.74575 * 66.80545 * 6 5 4 8 8 H 1.08996 * 109.63054 * 155.18743 * 7 6 5 9 9 C 1.50698 * 109.62924 * 34.78957 * 7 6 5 10 10 O 1.21274 * 120.00068 * 32.74923 * 9 7 6 11 11 N 1.34777 * 119.99536 * 212.74432 * 9 7 6 12 12 C 1.46500 * 119.99734 * 179.72411 * 11 9 7 13 13 C 1.52995 * 109.47404 * 180.27815 * 12 11 9 14 14 C 1.52993 * 109.47628 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47754 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99748 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00414 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00166 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.47031 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47357 * 119.99993 * 19 17 15 22 22 H 1.48500 * 109.47073 * 240.00216 * 19 17 15 23 23 C 1.33703 * 119.70259 * 180.16086 * 2 1 3 24 24 O 1.21276 * 120.11727 * 0.13267 * 23 2 1 25 25 H 1.09006 * 109.47040 * 90.00092 * 1 2 3 26 26 H 1.09000 * 109.47088 * 209.99870 * 1 2 3 27 27 H 1.08996 * 109.47268 * 330.00499 * 1 2 3 28 28 H 1.09001 * 109.60393 * 348.28351 * 3 2 1 29 29 H 1.08994 * 109.73934 * 227.86913 * 3 2 1 30 30 H 1.08998 * 109.19321 * 326.10929 * 4 3 2 31 31 H 1.08997 * 109.15739 * 206.80251 * 4 3 2 32 32 H 1.09003 * 108.61382 * 171.87536 * 5 4 3 33 33 H 1.09008 * 108.50478 * 54.03739 * 5 4 3 34 34 H 1.09010 * 109.21990 * 306.48194 * 6 5 4 35 35 H 1.08997 * 109.22719 * 187.13679 * 6 5 4 36 36 H 0.97002 * 120.00314 * 0.02562 * 11 9 7 37 37 H 1.08998 * 109.47362 * 300.28025 * 12 11 9 38 38 H 1.09000 * 109.46930 * 60.27961 * 12 11 9 39 39 H 1.09005 * 109.47259 * 300.00748 * 13 12 11 40 40 H 1.09000 * 109.46958 * 60.00162 * 13 12 11 41 41 H 1.09005 * 109.47204 * 300.00528 * 14 13 12 42 42 H 1.09000 * 109.47026 * 59.99950 * 14 13 12 43 43 H 0.97004 * 120.00074 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1962 1.2775 0.0000 4 6 2.8289 1.4794 1.3783 5 6 4.1870 0.8061 1.4540 6 6 4.1248 -0.7089 1.3843 7 6 3.6417 -1.1690 0.0067 8 1 4.0042 -2.1778 -0.1904 9 6 4.1598 -0.2291 -1.0513 10 8 5.2384 0.3071 -0.9105 11 7 3.4244 0.0154 -2.1540 12 6 3.9253 0.9337 -3.1796 13 6 2.9032 1.0390 -4.3131 14 6 3.4265 1.9975 -5.3846 15 6 2.4200 2.1007 -6.5014 16 1 1.4988 1.5391 -6.4517 17 6 2.6745 2.9129 -7.5861 18 7 3.7960 3.5972 -7.6464 19 14 1.4265 3.0413 -8.9701 20 1 0.2569 2.1790 -8.6635 21 1 0.9797 4.4511 -9.1045 22 1 2.0503 2.5963 -10.2420 23 6 2.1275 -1.1614 -0.0033 24 8 1.5178 -2.2097 -0.0086 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5137 28 1 1.5053 2.0943 -0.2085 29 1 2.9764 1.2551 -0.7608 30 1 2.1747 1.0532 2.1388 31 1 2.9472 2.5468 1.5646 32 1 4.6654 1.0920 2.3907 33 1 4.7989 1.1675 0.6274 34 1 3.4369 -1.0752 2.1465 35 1 5.1176 -1.1180 1.5715 36 1 2.5616 -0.4133 -2.2665 37 1 4.0829 1.9186 -2.7399 38 1 4.8687 0.5572 -3.5750 39 1 2.7455 0.0541 -4.7529 40 1 1.9598 1.4155 -3.9178 41 1 3.5845 2.9825 -4.9451 42 1 4.3698 1.6206 -5.7799 43 1 3.9749 4.1689 -8.4093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602094488.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:49 Heat of formation + Delta-G solvation = -71.146277 kcal Electronic energy + Delta-G solvation = -23389.315485 eV Core-core repulsion = 20048.563141 eV Total energy + Delta-G solvation = -3340.752344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69403 -39.08679 -36.63006 -35.86818 -34.54033 -33.45664 -31.91276 -31.08363 -28.65854 -26.85504 -25.80297 -24.29679 -23.17747 -21.43973 -20.82468 -20.20571 -19.21627 -17.92297 -17.00329 -16.58389 -15.94636 -15.88590 -15.49279 -15.20085 -14.54512 -14.48272 -14.18081 -14.11491 -13.82018 -13.30491 -13.20642 -12.84806 -12.75189 -12.33944 -12.15987 -12.03902 -11.89776 -11.69669 -11.13059 -11.05970 -10.94431 -10.80744 -10.73529 -10.58937 -10.17815 -9.93085 -9.73948 -9.40171 -9.15343 -8.98347 -8.78129 -8.41620 -6.06135 -4.09238 2.30779 2.44770 2.74222 3.14612 3.27297 3.35254 3.38815 4.06368 4.40484 4.43224 4.54749 4.59763 4.84300 4.87577 5.02194 5.13732 5.24755 5.30046 5.34632 5.41306 5.50151 5.59123 5.61580 5.65628 5.67899 5.75584 5.87571 5.92332 6.05301 6.18368 6.19404 6.42165 6.49992 6.71275 6.91760 7.06917 7.44473 7.58167 7.69585 7.85760 7.92178 8.10894 8.33489 8.97485 9.55472 11.05111 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.003857 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.704009 B = 7257.027187 C = 7696.124876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.604 5.604 3 C 0.075 3.925 4 C -0.136 4.136 5 C -0.157 4.157 6 C -0.089 4.089 7 C -0.130 4.130 8 H 0.134 0.866 9 C 0.523 3.477 10 O -0.525 6.525 11 N -0.727 5.727 12 C 0.113 3.887 13 C -0.121 4.121 14 C 0.025 3.975 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.518 3.482 24 O -0.539 6.539 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.399 0.601 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 -5.710 19.481 20.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.337 5.337 3 C -0.048 4.048 4 C -0.174 4.174 5 C -0.194 4.194 6 C -0.127 4.127 7 C -0.154 4.154 8 H 0.151 0.849 9 C 0.310 3.690 10 O -0.403 6.403 11 N -0.379 5.379 12 C -0.009 4.009 13 C -0.159 4.159 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C 0.305 3.695 24 O -0.417 6.417 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.234 0.766 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.475 -5.737 19.444 20.423 hybrid contribution -1.123 -0.015 -0.879 1.426 sum -3.598 -5.752 18.565 19.766 Atomic orbital electron populations 1.21751 0.78833 1.03159 1.02472 1.47813 1.07304 1.06288 1.72305 1.22610 0.98193 0.84812 0.99164 1.21760 0.97202 1.01532 0.96914 1.21665 0.98029 0.94525 1.05154 1.21032 1.02303 0.96955 0.92395 1.22000 0.92960 1.02841 0.97598 0.84859 1.19904 0.84908 0.81739 0.82439 1.90638 1.21260 1.50784 1.77594 1.46615 1.22718 1.47590 1.20973 1.21733 0.98837 0.92342 0.87964 1.21894 0.97048 1.01574 0.95384 1.19027 0.96698 0.93636 0.91938 1.21227 1.04228 1.26508 1.04105 0.92617 1.25017 0.95436 0.95571 0.98352 1.69971 1.23982 1.28725 1.30568 0.86537 0.81488 0.77824 0.82155 1.19751 1.20983 1.20964 1.20184 0.89436 0.83554 0.76358 1.90735 1.69812 1.31116 1.50020 0.92072 0.90477 0.91009 0.89172 0.87747 0.91677 0.90446 0.91590 0.87702 0.91171 0.89833 0.76566 0.91410 0.91359 0.92688 0.92753 0.96242 0.96238 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 10.35 59.85 0.62 1.34 16 2 N -0.60 -6.36 2.52 -181.01 -0.46 -6.82 16 3 C 0.07 0.74 5.57 -3.67 -0.02 0.72 16 4 C -0.14 -1.20 5.74 -27.35 -0.16 -1.36 16 5 C -0.16 -1.54 5.16 -27.96 -0.14 -1.69 16 6 C -0.09 -0.86 5.24 -27.31 -0.14 -1.01 16 7 C -0.13 -1.48 3.09 -92.54 -0.29 -1.76 16 8 H 0.13 1.41 8.13 -51.93 -0.42 0.99 16 9 C 0.52 7.04 4.19 -10.99 -0.05 7.00 16 10 O -0.53 -8.36 13.94 5.56 0.08 -8.28 16 11 N -0.73 -9.95 3.69 -60.30 -0.22 -10.17 16 12 C 0.11 1.84 5.47 -4.04 -0.02 1.82 16 13 C -0.12 -2.27 5.27 -26.74 -0.14 -2.41 16 14 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 16 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 19 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.52 6.41 5.16 -11.11 -0.06 6.35 16 24 O -0.54 -8.28 16.63 5.56 0.09 -8.19 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.75 7.39 -51.93 -0.38 0.36 16 27 H 0.07 0.49 8.03 -51.93 -0.42 0.07 16 28 H 0.09 0.78 7.92 -51.93 -0.41 0.36 16 29 H 0.11 1.24 3.24 -51.93 -0.17 1.07 16 30 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.11 1.30 4.70 -51.93 -0.24 1.06 16 34 H 0.07 0.64 7.87 -51.92 -0.41 0.23 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 5.19 6.98 -40.82 -0.29 4.91 16 37 H 0.07 1.11 8.11 -51.93 -0.42 0.69 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -31.60 335.46 -7.61 -39.21 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.93 Total: 2.21 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -0.95 Total: -3.62 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.06 Total: -42.56 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.17 Total: -16.46 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.60 -7.61 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602094488.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.934 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds