Wall clock time and date at job start Tue Mar 31 2020 06:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47453 * 2 1 4 4 C 1.53001 * 109.47061 * 185.48473 * 3 2 1 5 5 H 1.09000 * 109.47561 * 53.38619 * 4 3 2 6 6 C 1.53000 * 109.46854 * 173.39116 * 4 3 2 7 7 C 1.53005 * 109.46822 * 294.11254 * 6 4 3 8 8 C 1.54264 * 110.03145 * 292.50175 * 7 6 4 9 9 C 1.54892 * 104.19294 * 217.10761 * 8 7 6 10 10 C 1.54886 * 102.75155 * 37.94284 * 9 8 7 11 11 C 1.53878 * 110.03000 * 175.33461 * 7 6 4 12 12 C 1.50705 * 109.46723 * 293.38444 * 4 3 2 13 13 O 1.20822 * 119.99801 * 240.00262 * 12 4 3 14 14 O 1.34221 * 119.99784 * 60.00598 * 12 4 3 15 15 C 1.45206 * 117.00101 * 179.97438 * 14 12 4 16 16 C 1.53002 * 109.47105 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.46878 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99913 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00412 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99404 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00537 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46891 * 59.99938 * 21 19 17 23 23 H 1.48500 * 109.47056 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46841 * 300.00053 * 21 19 17 25 25 H 1.09006 * 109.46802 * 59.99878 * 1 2 3 26 26 H 1.08995 * 109.47363 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46814 * 300.00599 * 1 2 3 28 28 H 1.08998 * 109.46814 * 239.99401 * 2 1 3 29 29 H 1.08997 * 109.46907 * 120.00264 * 2 1 3 30 30 H 1.09001 * 109.47100 * 65.47818 * 3 2 1 31 31 H 1.09008 * 109.47175 * 305.47759 * 3 2 1 32 32 H 1.08994 * 109.47796 * 54.11624 * 6 4 3 33 33 H 1.09001 * 109.47054 * 174.11579 * 6 4 3 34 34 H 1.08997 * 110.01568 * 53.94674 * 7 6 4 35 35 H 1.09000 * 110.48766 * 335.78067 * 8 7 6 36 36 H 1.08995 * 110.48651 * 98.42833 * 8 7 6 37 37 H 1.08998 * 110.75678 * 279.62356 * 9 8 7 38 38 H 1.09003 * 110.91435 * 156.33432 * 9 8 7 39 39 H 1.09002 * 110.49043 * 203.38130 * 10 9 8 40 40 H 1.09003 * 110.60035 * 80.78874 * 10 9 8 41 41 H 1.08995 * 110.03327 * 238.57317 * 11 7 6 42 42 H 1.09001 * 110.03400 * 359.95614 * 11 7 6 43 43 H 1.08995 * 109.47026 * 299.99725 * 15 14 12 44 44 H 1.09003 * 109.46684 * 59.99846 * 15 14 12 45 45 H 1.08995 * 109.47216 * 299.99930 * 16 15 14 46 46 H 1.08996 * 109.46878 * 60.00424 * 16 15 14 47 47 H 0.97003 * 119.99911 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5639 1.4445 -0.1379 5 1 3.8505 0.8587 -1.0112 6 6 4.0589 2.8827 -0.3034 7 6 3.5507 3.4473 -1.6316 8 6 4.2219 2.7116 -2.8098 9 6 4.4446 3.8178 -3.8709 10 6 4.8381 5.0435 -3.0095 11 6 3.9426 4.9299 -1.7585 12 6 4.1807 0.8400 1.0971 13 8 4.9386 1.4925 1.7751 14 8 3.8883 -0.4233 1.4437 15 6 4.5193 -0.9402 2.6450 16 6 4.0683 -2.3837 2.8772 17 6 4.7227 -2.9199 4.1243 18 1 5.3930 -2.2937 4.6944 19 6 4.4659 -4.2100 4.5375 20 7 3.6501 -4.9727 3.8430 21 14 5.2766 -4.8745 6.0837 22 1 4.8822 -4.0400 7.2470 23 1 4.8389 -6.2755 6.3090 24 1 6.7525 -4.8359 5.9244 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8899 30 1 1.7591 1.9272 0.9350 31 1 1.5989 1.9839 -0.8369 32 1 3.6839 3.4930 0.5180 33 1 5.1489 2.8948 -0.2968 34 1 2.4677 3.3408 -1.6922 35 1 5.1749 2.2836 -2.4992 36 1 3.5632 1.9358 -3.2001 37 1 3.5260 4.0133 -4.4239 38 1 5.2529 3.5479 -4.5506 39 1 4.6292 5.9694 -3.5454 40 1 5.8908 4.9943 -2.7307 41 1 3.0497 5.5428 -1.8816 42 1 4.4941 5.2474 -0.8736 43 1 5.6025 -0.9122 2.5272 44 1 4.2307 -0.3278 3.4992 45 1 2.9851 -2.4113 2.9952 46 1 4.3565 -2.9963 2.0230 47 1 3.4697 -5.8805 4.1334 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733601437.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:44 Heat of formation + Delta-G solvation = -145.277977 kcal Electronic energy + Delta-G solvation = -22724.159407 eV Core-core repulsion = 19483.732815 eV Total energy + Delta-G solvation = -3240.426592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.29867 -38.67325 -36.20272 -35.69012 -33.31562 -32.49611 -30.32667 -29.12429 -28.71602 -25.68260 -25.19038 -23.28040 -21.49157 -21.04923 -20.75515 -20.02396 -19.30103 -17.31928 -16.48693 -16.16211 -16.04163 -15.56940 -15.06940 -14.56875 -14.43140 -14.36637 -13.61543 -13.49515 -13.23306 -13.02659 -12.73693 -12.38931 -12.34527 -12.06630 -11.70217 -11.33914 -11.31589 -11.23807 -11.12032 -11.10285 -10.93010 -10.83060 -10.73159 -10.71834 -10.67603 -10.49369 -10.44500 -10.24017 -10.04240 -9.57989 -9.54818 -9.28183 -8.43418 -6.09787 -4.14045 2.64910 3.21856 3.30215 3.34247 3.38727 4.34306 4.38971 4.42827 4.54665 4.72028 4.83449 4.99649 5.16070 5.22701 5.24895 5.26676 5.29364 5.37814 5.43373 5.46055 5.48170 5.61607 5.63882 5.68488 5.72932 5.79968 5.87526 5.92104 5.92948 5.96633 6.06816 6.11722 6.12004 6.14981 6.17979 6.25397 6.33458 6.40887 6.63203 6.69805 7.07650 7.57197 7.63837 7.87933 8.22235 8.32193 8.91310 9.50256 11.01629 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.003182 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.847423 B = 8796.090407 C = 9419.891930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C -0.109 4.109 4 C -0.083 4.083 5 H 0.105 0.895 6 C -0.096 4.096 7 C -0.093 4.093 8 C -0.124 4.124 9 C -0.125 4.125 10 C -0.125 4.125 11 C -0.121 4.121 12 C 0.458 3.542 13 O -0.521 6.521 14 O -0.351 6.351 15 C 0.072 3.928 16 C 0.027 3.973 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.287 17.146 -14.895 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C -0.146 4.146 4 C -0.102 4.102 5 H 0.123 0.877 6 C -0.134 4.134 7 C -0.111 4.111 8 C -0.161 4.161 9 C -0.163 4.163 10 C -0.163 4.163 11 C -0.159 4.159 12 C 0.301 3.699 13 O -0.410 6.410 14 O -0.267 6.267 15 C 0.000 4.000 16 C -0.010 4.010 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.143 17.113 -14.655 22.748 hybrid contribution 0.551 -0.447 1.010 1.235 sum -2.592 16.665 -13.644 21.694 Atomic orbital electron populations 1.21742 0.96137 1.01727 1.01024 1.21758 0.95503 0.95882 1.04291 1.21630 0.91885 0.98465 1.02619 1.21179 0.97038 0.97214 0.94786 0.87679 1.21599 1.01558 0.93156 0.97074 1.21865 1.00402 0.94594 0.94288 1.22505 1.00871 0.97617 0.95139 1.22488 1.01038 0.95347 0.97415 1.22358 0.99752 0.98024 0.96161 1.22206 0.99482 0.95930 0.98267 1.23615 0.78917 0.80953 0.86416 1.90610 1.34795 1.62261 1.53347 1.86570 1.65918 1.28233 1.46006 1.23618 0.96452 0.97979 0.81999 1.19139 0.97824 0.86664 0.97421 1.20956 1.28120 0.98257 1.09195 0.92386 1.24973 0.95110 0.96741 0.97272 1.69965 1.35352 1.08498 1.39042 0.86544 0.79795 0.77923 0.83116 1.20081 1.21115 1.20074 0.93387 0.92559 0.93023 0.91894 0.89261 0.91692 0.90600 0.91164 0.90846 0.90498 0.91319 0.91519 0.91686 0.91794 0.92031 0.91709 0.91959 0.91553 0.92520 0.92516 0.95417 0.95431 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.14 -1.76 5.44 -26.73 -0.15 -1.90 16 3 C -0.11 -1.23 4.57 -26.73 -0.12 -1.35 16 4 C -0.08 -1.04 2.23 -91.77 -0.20 -1.25 16 5 H 0.11 1.21 7.33 -51.93 -0.38 0.83 16 6 C -0.10 -1.07 3.16 -26.73 -0.08 -1.16 16 7 C -0.09 -0.81 2.81 -89.50 -0.25 -1.06 16 8 C -0.12 -1.04 5.43 -25.07 -0.14 -1.17 16 9 C -0.13 -0.93 6.91 -24.74 -0.17 -1.10 16 10 C -0.13 -0.94 6.83 -25.07 -0.17 -1.12 16 11 C -0.12 -0.98 6.46 -25.61 -0.17 -1.15 16 12 C 0.46 8.01 7.24 36.01 0.26 8.27 16 13 O -0.52 -10.44 15.65 -18.75 -0.29 -10.74 16 14 O -0.35 -6.92 7.54 -39.23 -0.30 -7.22 16 15 C 0.07 1.62 5.41 37.16 0.20 1.82 16 16 C 0.03 0.70 5.35 -27.88 -0.15 0.55 16 17 C -0.53 -14.92 9.11 -34.44 -0.31 -15.24 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 21 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.44 5.85 -51.93 -0.30 1.13 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.69 6.22 -51.92 -0.32 0.37 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.90 7.80 -51.93 -0.40 0.50 16 34 H 0.08 0.63 6.26 -51.93 -0.33 0.30 16 35 H 0.07 0.63 7.77 -51.93 -0.40 0.22 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 43 H 0.06 1.28 8.13 -51.93 -0.42 0.85 16 44 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -30.37 368.84 -9.34 -39.71 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -8.84 Total: -2.61 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -1.18 Total: -15.52 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.74 Total: -25.68 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.59 Total: -17.96 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.37 -9.34 -39.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733601437.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.567 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds