Wall clock time and date at job start Tue Mar 31 2020 06:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47324 * 2 1 4 4 H 1.08994 * 109.46797 * 306.79233 * 3 2 1 5 5 C 1.53007 * 109.47045 * 186.79161 * 3 2 1 6 6 C 1.52999 * 109.46660 * 173.26461 * 5 3 2 7 7 C 1.54266 * 110.03385 * 291.70864 * 6 5 3 8 8 C 1.54890 * 104.19487 * 217.10476 * 7 6 5 9 9 C 1.54896 * 102.74934 * 37.94661 * 8 7 6 10 10 C 1.53879 * 110.02999 * 174.54234 * 6 5 3 11 11 C 1.50700 * 109.47019 * 66.79197 * 3 2 1 12 12 O 1.20821 * 119.99864 * 119.99979 * 11 3 2 13 13 O 1.34228 * 119.99799 * 299.99848 * 11 3 2 14 14 C 1.45199 * 116.99840 * 180.02562 * 13 11 3 15 15 C 1.53005 * 109.47462 * 180.02562 * 14 13 11 16 16 C 1.52992 * 109.47076 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46986 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99544 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00238 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99816 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99998 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46942 * 89.99746 * 21 19 17 23 23 H 1.48498 * 109.47117 * 209.99917 * 21 19 17 24 24 H 1.48499 * 109.47109 * 329.99970 * 21 19 17 25 25 H 1.09000 * 109.46858 * 299.99618 * 1 2 3 26 26 H 1.08993 * 109.47406 * 59.99733 * 1 2 3 27 27 H 1.09001 * 109.47032 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47117 * 239.99904 * 2 1 3 29 29 H 1.09007 * 109.47337 * 120.00042 * 2 1 3 30 30 H 1.08990 * 109.47193 * 293.26451 * 5 3 2 31 31 H 1.08999 * 109.47044 * 53.26869 * 5 3 2 32 32 H 1.08999 * 110.01749 * 53.15250 * 6 5 3 33 33 H 1.08994 * 110.48624 * 335.78925 * 7 6 5 34 34 H 1.09002 * 110.48366 * 98.43147 * 7 6 5 35 35 H 1.09001 * 110.76123 * 279.63064 * 8 7 6 36 36 H 1.09006 * 110.91373 * 156.32880 * 8 7 6 37 37 H 1.08996 * 110.48340 * 203.37765 * 9 8 7 38 38 H 1.09001 * 110.59809 * 80.78532 * 9 8 7 39 39 H 1.09001 * 110.03235 * 238.56886 * 10 6 5 40 40 H 1.08997 * 110.02790 * 359.95329 * 10 6 5 41 41 H 1.09003 * 109.47042 * 300.00197 * 14 13 11 42 42 H 1.09001 * 109.47024 * 59.99806 * 14 13 11 43 43 H 1.08994 * 109.46846 * 300.00171 * 15 14 13 44 44 H 1.09001 * 109.46487 * 59.99614 * 15 14 13 45 45 H 1.09003 * 109.47137 * 299.99738 * 16 15 14 46 46 H 1.08993 * 109.47456 * 59.99879 * 16 15 14 47 47 H 0.97006 * 119.99956 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5809 1.9901 -0.8229 5 6 3.5606 1.4458 -0.1706 6 6 4.0516 2.8850 -0.3390 7 6 3.5676 3.4541 -1.6887 8 6 4.7490 4.3281 -2.1780 9 6 5.9866 3.5033 -1.7453 10 6 5.5897 2.9163 -0.3750 11 6 1.6796 2.1027 1.3059 12 8 2.5496 2.5318 2.0261 13 8 0.3921 2.2140 1.6687 14 6 0.1189 2.8617 2.9392 15 6 -1.3916 2.8951 3.1804 16 6 -1.6794 3.5781 4.5188 17 6 -3.1672 3.6104 4.7566 18 1 -3.8401 3.1865 4.0259 19 6 -3.6693 4.1820 5.9064 20 7 -2.8499 4.6987 6.7959 21 14 -5.5136 4.2227 6.2008 22 1 -5.9259 2.9951 6.9277 23 1 -5.8592 5.4178 7.0117 24 1 -6.2216 4.2873 4.8971 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 4.0259 1.0038 0.7103 31 1 3.8284 0.8649 -1.0532 32 1 3.6847 3.5027 0.4807 33 1 3.3719 2.6471 -2.3947 34 1 2.6750 4.0636 -1.5475 35 1 4.7408 5.3000 -1.6846 36 1 4.7230 4.4462 -3.2613 37 1 6.8592 4.1487 -1.6455 38 1 6.1838 2.7042 -2.4599 39 1 5.9691 3.5499 0.4267 40 1 5.9861 1.9062 -0.2716 41 1 0.6025 2.3052 3.7421 42 1 0.5065 3.8803 2.9185 43 1 -1.8755 3.4512 2.3776 44 1 -1.7787 1.8763 3.2012 45 1 -1.1954 3.0222 5.3218 46 1 -1.2923 4.5968 4.4975 47 1 -3.2031 5.1005 7.6051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734052765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:06 Heat of formation + Delta-G solvation = -143.196956 kcal Electronic energy + Delta-G solvation = -22560.786285 eV Core-core repulsion = 19320.449932 eV Total energy + Delta-G solvation = -3240.336352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.60132 -38.56179 -36.47664 -35.40375 -33.95072 -31.69464 -31.34140 -28.90192 -27.82572 -26.98416 -24.25077 -23.18966 -22.35818 -20.96039 -20.42113 -19.81122 -19.61313 -17.53763 -16.78244 -16.30500 -15.93572 -15.87138 -15.18566 -14.47796 -14.24115 -13.95731 -13.86540 -13.61379 -13.47682 -13.22624 -12.46204 -12.30341 -12.20853 -11.99861 -11.91649 -11.81279 -11.32290 -11.27848 -11.19987 -11.07702 -10.94058 -10.87533 -10.69229 -10.66600 -10.61972 -10.51055 -10.39815 -10.29018 -10.01786 -9.69527 -9.46185 -9.15728 -8.38746 -6.03458 -4.06485 2.41842 2.95571 3.30860 3.37046 3.40586 4.30344 4.43042 4.44473 4.50281 4.66448 4.75924 4.82998 5.14475 5.21313 5.26122 5.28774 5.32512 5.33875 5.47679 5.48616 5.51823 5.57379 5.59968 5.64659 5.66902 5.67557 5.74992 5.86151 5.89918 5.93887 5.98495 6.03352 6.06497 6.13716 6.19779 6.35205 6.42081 6.55320 6.61651 6.89649 7.00683 7.60639 7.71854 7.94847 8.02522 8.36294 8.99859 9.57808 11.08012 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025305 B = 0.002903 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.243576 B = 9641.858650 C =10197.141259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.113 4.113 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.096 4.096 6 C -0.101 4.101 7 C -0.124 4.124 8 C -0.125 4.125 9 C -0.125 4.125 10 C -0.118 4.118 11 C 0.460 3.540 12 O -0.509 6.509 13 O -0.353 6.353 14 C 0.065 3.935 15 C -0.108 4.108 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.057 0.943 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.964 -6.901 -18.985 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.151 4.151 3 C -0.103 4.103 4 H 0.124 0.876 5 C -0.133 4.133 6 C -0.119 4.119 7 C -0.161 4.161 8 C -0.163 4.163 9 C -0.162 4.162 10 C -0.155 4.155 11 C 0.303 3.697 12 O -0.398 6.398 13 O -0.269 6.269 14 C -0.008 4.008 15 C -0.145 4.145 16 C -0.013 4.013 17 C -0.559 4.559 18 H 0.076 0.924 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.195 -6.665 -18.554 24.891 hybrid contribution -0.927 0.194 0.468 1.056 sum 14.269 -6.471 -18.087 23.929 Atomic orbital electron populations 1.22017 0.94443 1.01924 1.03934 1.21496 0.97319 0.93505 1.02744 1.21271 0.97962 0.97553 0.93511 0.87584 1.21639 0.92040 0.97182 1.02440 1.21939 0.95301 0.96428 0.98224 1.22512 0.97978 0.99058 0.96575 1.22485 0.94868 0.98669 1.00272 1.22361 0.97727 0.99116 0.97018 1.22161 0.95289 1.00925 0.97149 1.23622 0.81258 0.76663 0.88126 1.90624 1.49753 1.45682 1.53715 1.86550 1.27598 1.71801 1.40966 1.23480 0.99507 0.96645 0.81169 1.21745 0.89679 1.01834 1.01287 1.19047 0.97001 0.95596 0.89679 1.21176 0.91877 1.38187 1.04686 0.92447 1.25032 0.98046 0.95319 0.96085 1.69969 1.34465 1.39032 1.09917 0.86551 0.85412 0.77546 0.78253 1.20610 1.21188 1.19810 0.89978 0.92619 0.92727 0.90735 0.91588 0.90928 0.90774 0.89510 0.91531 0.91879 0.91602 0.91846 0.92036 0.91877 0.91894 0.91889 0.91695 0.91700 0.92224 0.92227 0.96300 0.96289 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.60 37.16 0.36 -1.37 16 2 C -0.11 -1.06 5.38 -26.73 -0.14 -1.21 16 3 C -0.08 -0.89 2.24 -91.77 -0.21 -1.10 16 4 H 0.11 1.02 7.34 -51.93 -0.38 0.64 16 5 C -0.10 -0.92 3.45 -26.73 -0.09 -1.01 16 6 C -0.10 -1.04 2.71 -89.50 -0.24 -1.28 16 7 C -0.12 -1.10 5.46 -25.07 -0.14 -1.24 16 8 C -0.13 -1.03 6.91 -24.73 -0.17 -1.20 16 9 C -0.12 -0.98 6.83 -25.07 -0.17 -1.16 16 10 C -0.12 -1.09 6.46 -25.61 -0.17 -1.25 16 11 C 0.46 6.85 6.90 36.01 0.25 7.10 16 12 O -0.51 -8.85 13.88 -18.75 -0.26 -9.11 16 13 O -0.35 -5.75 7.46 -39.25 -0.29 -6.04 16 14 C 0.06 1.20 5.47 37.16 0.20 1.41 16 15 C -0.11 -2.24 5.53 -26.73 -0.15 -2.39 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 21 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.08 1.06 5.53 -51.93 -0.29 0.77 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.78 7.89 -51.93 -0.41 0.37 16 31 H 0.07 0.56 7.97 -51.93 -0.41 0.15 16 32 H 0.09 1.15 6.08 -51.93 -0.32 0.84 16 33 H 0.07 0.52 7.75 -51.93 -0.40 0.11 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 41 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 42 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 368.46 15.07 5.55 5.55 Total: -1.00 -30.54 368.46 -9.41 -39.95 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -8.91 Total: -2.99 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -1.22 Total: -17.73 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.74 Total: -26.22 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.55 Total: -15.16 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.54 -9.41 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734052765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.245 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds