Wall clock time and date at job start Tue Mar 31 2020 06:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47324 * 2 1 4 4 H 1.08994 * 109.46797 * 306.79233 * 3 2 1 5 5 C 1.53007 * 109.47045 * 186.79161 * 3 2 1 6 6 C 1.52999 * 109.46660 * 173.26461 * 5 3 2 7 7 C 1.54266 * 110.03385 * 291.70864 * 6 5 3 8 8 C 1.54890 * 104.19487 * 217.10476 * 7 6 5 9 9 C 1.54896 * 102.74934 * 37.94661 * 8 7 6 10 10 C 1.53879 * 110.02999 * 174.54234 * 6 5 3 11 11 C 1.50700 * 109.47019 * 66.79197 * 3 2 1 12 12 O 1.20821 * 119.99864 * 119.99979 * 11 3 2 13 13 O 1.34228 * 119.99799 * 299.99848 * 11 3 2 14 14 C 1.45199 * 116.99840 * 180.02562 * 13 11 3 15 15 C 1.53005 * 109.47462 * 180.02562 * 14 13 11 16 16 C 1.52992 * 109.47076 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46986 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99544 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00238 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99816 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99998 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46942 * 89.99746 * 21 19 17 23 23 H 1.48498 * 109.47117 * 209.99917 * 21 19 17 24 24 H 1.48499 * 109.47109 * 329.99970 * 21 19 17 25 25 H 1.09000 * 109.46858 * 299.99618 * 1 2 3 26 26 H 1.08993 * 109.47406 * 59.99733 * 1 2 3 27 27 H 1.09001 * 109.47032 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47117 * 239.99904 * 2 1 3 29 29 H 1.09007 * 109.47337 * 120.00042 * 2 1 3 30 30 H 1.08990 * 109.47193 * 293.26451 * 5 3 2 31 31 H 1.08999 * 109.47044 * 53.26869 * 5 3 2 32 32 H 1.08999 * 110.01749 * 53.15250 * 6 5 3 33 33 H 1.08994 * 110.48624 * 335.78925 * 7 6 5 34 34 H 1.09002 * 110.48366 * 98.43147 * 7 6 5 35 35 H 1.09001 * 110.76123 * 279.63064 * 8 7 6 36 36 H 1.09006 * 110.91373 * 156.32880 * 8 7 6 37 37 H 1.08996 * 110.48340 * 203.37765 * 9 8 7 38 38 H 1.09001 * 110.59809 * 80.78532 * 9 8 7 39 39 H 1.09001 * 110.03235 * 238.56886 * 10 6 5 40 40 H 1.08997 * 110.02790 * 359.95329 * 10 6 5 41 41 H 1.09003 * 109.47042 * 300.00197 * 14 13 11 42 42 H 1.09001 * 109.47024 * 59.99806 * 14 13 11 43 43 H 1.08994 * 109.46846 * 300.00171 * 15 14 13 44 44 H 1.09001 * 109.46487 * 59.99614 * 15 14 13 45 45 H 1.09003 * 109.47137 * 299.99738 * 16 15 14 46 46 H 1.08993 * 109.47456 * 59.99879 * 16 15 14 47 47 H 0.97006 * 119.99956 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5809 1.9901 -0.8229 5 6 3.5606 1.4458 -0.1706 6 6 4.0516 2.8850 -0.3390 7 6 3.5676 3.4541 -1.6887 8 6 4.7490 4.3281 -2.1780 9 6 5.9866 3.5033 -1.7453 10 6 5.5897 2.9163 -0.3750 11 6 1.6796 2.1027 1.3059 12 8 2.5496 2.5318 2.0261 13 8 0.3921 2.2140 1.6687 14 6 0.1189 2.8617 2.9392 15 6 -1.3916 2.8951 3.1804 16 6 -1.6794 3.5781 4.5188 17 6 -3.1672 3.6104 4.7566 18 1 -3.8401 3.1865 4.0259 19 6 -3.6693 4.1820 5.9064 20 7 -2.8499 4.6987 6.7959 21 14 -5.5136 4.2227 6.2008 22 1 -5.9259 2.9951 6.9277 23 1 -5.8592 5.4178 7.0117 24 1 -6.2216 4.2873 4.8971 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 4.0259 1.0038 0.7103 31 1 3.8284 0.8649 -1.0532 32 1 3.6847 3.5027 0.4807 33 1 3.3719 2.6471 -2.3947 34 1 2.6750 4.0636 -1.5475 35 1 4.7408 5.3000 -1.6846 36 1 4.7230 4.4462 -3.2613 37 1 6.8592 4.1487 -1.6455 38 1 6.1838 2.7042 -2.4599 39 1 5.9691 3.5499 0.4267 40 1 5.9861 1.9062 -0.2716 41 1 0.6025 2.3052 3.7421 42 1 0.5065 3.8803 2.9185 43 1 -1.8755 3.4512 2.3776 44 1 -1.7787 1.8763 3.2012 45 1 -1.1954 3.0222 5.3218 46 1 -1.2923 4.5968 4.4975 47 1 -3.2031 5.1005 7.6051 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734052765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:05 Heat of formation + Delta-G solvation = -156.931499 kcal Electronic energy + Delta-G solvation = -22561.381859 eV Core-core repulsion = 19320.449932 eV Total energy + Delta-G solvation = -3240.931927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79879 -39.41592 -37.78027 -36.33095 -35.89652 -33.65985 -32.12173 -29.60194 -29.21864 -28.30973 -25.72413 -24.36123 -23.49750 -22.17888 -21.66117 -20.91740 -20.41116 -18.82248 -18.47859 -17.85810 -17.21614 -16.70240 -16.49746 -16.05537 -15.54749 -15.03392 -14.70709 -14.59764 -14.44215 -14.19212 -14.09891 -13.85216 -13.79293 -13.10090 -12.93233 -12.84468 -12.69318 -12.55326 -12.42588 -12.18119 -12.02352 -11.93227 -11.88540 -11.82090 -11.70636 -11.52221 -11.43298 -11.37938 -11.35359 -11.29101 -11.16259 -10.93134 -10.58991 -8.23176 -6.35041 1.21458 1.40366 1.42133 1.53281 1.71691 2.40404 3.10653 3.49046 3.64585 3.73417 3.81967 3.97689 3.98982 4.03591 4.06657 4.27887 4.40365 4.47658 4.51443 4.58866 4.60296 4.72720 4.75409 4.77970 4.80805 4.85900 4.89640 4.95442 4.97359 5.06253 5.11298 5.12420 5.15684 5.22151 5.29035 5.30369 5.41935 5.44388 5.50489 5.51126 5.60447 5.61583 5.68729 5.78354 6.17466 6.76346 6.81567 7.34662 8.89192 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025305 B = 0.002903 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.243576 B = 9641.858650 C =10197.141259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.109 4.109 3 C -0.076 4.076 4 H 0.124 0.876 5 C -0.091 4.091 6 C -0.103 4.103 7 C -0.121 4.121 8 C -0.127 4.127 9 C -0.120 4.120 10 C -0.119 4.119 11 C 0.454 3.546 12 O -0.539 6.539 13 O -0.349 6.349 14 C 0.075 3.925 15 C -0.091 4.091 16 C 0.026 3.974 17 C -0.543 4.543 18 H 0.066 0.934 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.261 1.261 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.108 0.892 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.067 0.933 45 H -0.005 1.005 46 H -0.006 1.006 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.519 -8.344 -21.627 27.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.146 4.146 3 C -0.094 4.094 4 H 0.141 0.859 5 C -0.128 4.128 6 C -0.122 4.122 7 C -0.159 4.159 8 C -0.164 4.164 9 C -0.157 4.157 10 C -0.157 4.157 11 C 0.299 3.701 12 O -0.429 6.429 13 O -0.265 6.265 14 C 0.002 3.998 15 C -0.129 4.129 16 C -0.011 4.011 17 C -0.581 4.581 18 H 0.084 0.916 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.185 1.185 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.126 0.874 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.013 0.987 46 H 0.013 0.987 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.755 -8.120 -21.216 27.089 hybrid contribution -0.714 0.649 1.292 1.613 sum 14.041 -7.471 -19.925 25.494 Atomic orbital electron populations 1.22012 0.95182 1.02341 1.02896 1.21530 0.96574 0.92435 1.04047 1.21456 0.98882 0.98173 0.90935 0.85863 1.21663 0.90935 0.96941 1.03259 1.21896 0.96043 0.96435 0.97828 1.22514 0.97748 0.99612 0.96012 1.22506 0.94766 0.98050 1.01118 1.22352 0.97626 0.99505 0.96244 1.22167 0.94556 1.01271 0.97707 1.24698 0.80133 0.75973 0.89302 1.90622 1.50264 1.46970 1.55008 1.86585 1.28946 1.71563 1.39444 1.23063 0.97918 0.96405 0.82452 1.21425 0.91287 1.01573 0.98566 1.18929 0.96050 0.94371 0.91752 1.21622 0.93050 1.38246 1.05145 0.91616 1.26032 1.03499 0.94703 0.95745 1.70107 1.36949 1.39884 1.10535 0.85377 0.78858 0.77795 0.78611 1.19652 1.20792 1.18474 0.92950 0.91604 0.91645 0.87260 0.92384 0.92391 0.87384 0.93353 0.89404 0.92897 0.92818 0.90256 0.91698 0.90257 0.93559 0.90969 0.92454 0.92528 0.91561 0.91469 0.98698 0.98722 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.60 71.98 0.69 -2.42 16 2 C -0.11 -1.74 5.38 30.59 0.16 -1.58 16 3 C -0.08 -1.47 2.24 -11.54 -0.03 -1.49 16 4 H 0.12 2.03 7.34 -2.39 -0.02 2.01 16 5 C -0.09 -1.57 3.45 30.60 0.11 -1.46 16 6 C -0.10 -2.06 2.71 -10.07 -0.03 -2.09 16 7 C -0.12 -1.93 5.46 31.67 0.17 -1.76 16 8 C -0.13 -1.86 6.91 31.89 0.22 -1.64 16 9 C -0.12 -1.65 6.83 31.67 0.22 -1.44 16 10 C -0.12 -2.11 6.46 31.32 0.20 -1.91 16 11 C 0.45 13.57 6.90 71.24 0.49 14.07 16 12 O -0.54 -19.44 13.88 21.98 0.30 -19.13 16 13 O -0.35 -11.47 7.46 -51.40 -0.38 -11.85 16 14 C 0.08 2.89 5.47 71.98 0.39 3.28 16 15 C -0.09 -3.84 5.53 30.59 0.17 -3.68 16 16 C 0.03 1.40 4.97 29.85 0.15 1.55 16 17 C -0.54 -31.04 9.11 25.60 0.23 -30.81 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 19 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 20 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 21 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 25 H 0.05 1.30 5.53 -2.39 -0.01 1.29 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.11 1.07 8.12 -2.39 -0.02 1.05 16 29 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.06 1.19 7.89 -2.39 -0.02 1.17 16 31 H 0.11 1.18 7.97 -2.39 -0.02 1.16 16 32 H 0.05 1.34 6.08 -2.39 -0.01 1.32 16 33 H 0.09 1.04 7.75 -2.39 -0.02 1.02 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.12 7.67 -2.39 -0.02 1.11 16 41 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 42 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 43 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 45 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 46 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 47 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -67.66 368.46 6.75 -60.91 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.90 Total: 12.04 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 3.62 Total: -31.04 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.28 Total: -57.24 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.08 Total: -30.99 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -67.66 6.75 -60.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734052765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.017 kcal (2) G-P(sol) polarization free energy of solvation -67.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds