Wall clock time and date at job start Tue Mar 31 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46745 * 2 1 4 4 C 1.53007 * 109.46915 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46662 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46795 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46843 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46857 * 55.00800 * 7 6 5 9 9 C 1.52999 * 109.47842 * 295.00381 * 7 6 5 10 10 C 1.50702 * 109.46753 * 174.99945 * 7 6 5 11 11 O 1.20827 * 120.00187 * 33.73858 * 10 7 6 12 12 O 1.34225 * 120.00194 * 213.73015 * 10 7 6 13 13 C 1.45202 * 117.00433 * 183.27494 * 12 10 7 14 14 C 1.52994 * 109.47653 * 176.20830 * 13 12 10 15 15 C 1.50692 * 115.55196 * 186.25038 * 14 13 12 16 16 H 1.08004 * 120.00252 * 144.43676 * 15 14 13 17 17 C 1.37882 * 120.00034 * 324.43485 * 15 14 13 18 18 N 1.31512 * 119.99986 * 167.95715 * 17 15 14 19 19 Si 1.86801 * 119.99885 * 347.95393 * 17 15 14 20 20 H 1.48503 * 109.46797 * 95.36727 * 19 17 15 21 21 H 1.48493 * 109.47042 * 215.36484 * 19 17 15 22 22 H 1.48500 * 109.47014 * 335.36759 * 19 17 15 23 23 C 1.53004 * 117.49671 * 40.57505 * 14 13 12 24 24 C 1.53003 * 117.49706 * 331.92271 * 14 13 12 25 25 H 1.08995 * 109.47346 * 299.99706 * 1 2 3 26 26 H 1.09001 * 109.47532 * 60.00313 * 1 2 3 27 27 H 1.09002 * 109.46676 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47346 * 240.00293 * 2 1 3 29 29 H 1.09001 * 109.47532 * 119.99687 * 2 1 3 30 30 H 1.08995 * 109.46959 * 60.00057 * 3 2 1 31 31 H 1.09002 * 109.47241 * 299.99733 * 3 2 1 32 32 H 1.08993 * 109.46866 * 59.99943 * 4 3 2 33 33 H 1.09002 * 109.46895 * 299.99879 * 4 3 2 34 34 H 1.09004 * 109.47151 * 60.00235 * 5 4 3 35 35 H 1.08996 * 109.47609 * 299.99879 * 5 4 3 36 36 H 1.09004 * 109.46776 * 60.00376 * 6 5 4 37 37 H 1.08996 * 109.47246 * 300.00472 * 6 5 4 38 38 H 1.08991 * 109.47495 * 186.39378 * 9 7 6 39 39 H 1.09003 * 109.46592 * 306.39881 * 9 7 6 40 40 H 1.09001 * 109.46776 * 66.38701 * 9 7 6 41 41 H 1.09007 * 109.46579 * 296.21025 * 13 12 10 42 42 H 1.09000 * 109.46884 * 56.19909 * 13 12 10 43 43 H 0.97001 * 119.99783 * 179.97438 * 18 17 15 44 44 H 1.08993 * 117.50277 * 0.02562 * 23 14 13 45 45 H 1.09009 * 117.49469 * 145.02008 * 23 14 13 46 46 H 1.09004 * 117.49617 * 214.98118 * 24 14 13 47 47 H 1.09001 * 117.49595 * 359.97010 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0798 2.8852 0.0000 6 6 5.6099 2.8853 0.0000 7 6 6.1197 4.3278 0.0000 8 1 5.6851 4.8667 0.8419 9 6 5.7149 5.0120 -1.3072 10 6 7.6216 4.3297 0.1239 11 8 8.2705 3.4438 -0.3802 12 8 8.2386 5.3156 0.7939 13 6 9.6904 5.2931 0.8109 14 6 10.2113 6.5359 1.5353 15 6 11.7057 6.7272 1.5052 16 1 12.1217 7.7219 1.4414 17 6 12.5421 5.6324 1.5592 18 7 13.8234 5.7702 1.2969 19 14 11.8553 3.9534 2.0051 20 1 11.5445 3.2002 0.7636 21 1 12.8598 3.2032 2.8009 22 1 10.6157 4.1223 2.8052 23 6 9.4670 6.9832 2.7951 24 6 9.3375 7.7914 1.5016 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9290 -0.8908 33 1 3.9337 0.9287 0.8891 34 1 3.7168 3.3985 0.8905 35 1 3.7161 3.3996 -0.8895 36 1 5.9732 2.3719 -0.8903 37 1 5.9733 2.3710 0.8897 38 1 6.1731 5.9997 -1.3575 39 1 6.0530 4.4112 -2.1516 40 1 4.6301 5.1123 -1.3440 41 1 10.0338 4.3987 1.3309 42 1 10.0656 5.2850 -0.2124 43 1 14.4119 5.0000 1.3353 44 1 8.6065 6.3919 3.1079 45 1 10.0584 7.4162 3.6020 46 1 9.8437 8.7558 1.4580 47 1 8.3918 7.7321 0.9629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:13 Heat of formation + Delta-G solvation = -96.380302 kcal Electronic energy + Delta-G solvation = -22314.033305 eV Core-core repulsion = 19075.727075 eV Total energy + Delta-G solvation = -3238.306230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26399 -37.64837 -36.87352 -35.40510 -35.00712 -32.28701 -32.06970 -28.37594 -27.79459 -25.82727 -25.04196 -23.22112 -21.39745 -21.35345 -21.20942 -19.71129 -19.15893 -17.48689 -16.86141 -16.27825 -16.04630 -15.67094 -15.17947 -14.65612 -14.39325 -14.08275 -13.87236 -13.67075 -13.31594 -12.97023 -12.83637 -12.79810 -12.47391 -12.27455 -11.96988 -11.84582 -11.71638 -11.34784 -11.28683 -11.12417 -11.08036 -10.88595 -10.80131 -10.70452 -10.63675 -10.45857 -10.43675 -10.08681 -9.70987 -9.50117 -9.25469 -8.71478 -8.34669 -6.26829 -4.20774 2.52803 3.04514 3.23769 3.31411 3.34641 4.26863 4.35916 4.56082 4.62438 4.71750 4.73186 4.78749 4.88300 4.96108 5.11699 5.17169 5.24812 5.31650 5.39416 5.42467 5.49925 5.54989 5.58839 5.64249 5.66355 5.72403 5.76587 5.78754 5.83861 5.84606 5.88494 5.99491 6.00875 6.04303 6.15641 6.19949 6.22337 6.52754 6.59478 6.73724 6.96452 7.03183 7.22031 7.61217 8.13829 8.39628 8.78217 9.35938 10.85164 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027859 B = 0.003057 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.837959 B = 9157.240960 C = 9619.338748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.118 4.118 6 C -0.108 4.108 7 C -0.083 4.083 8 H 0.101 0.899 9 C -0.143 4.143 10 C 0.455 3.545 11 O -0.513 6.513 12 O -0.351 6.351 13 C 0.085 3.915 14 C 0.004 3.996 15 C -0.483 4.483 16 H 0.086 0.914 17 C 0.078 3.922 18 N -0.883 5.883 19 Si 0.872 3.128 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.259 1.259 23 C -0.199 4.199 24 C -0.178 4.178 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.269 0.731 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.218 -7.382 -2.944 25.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.159 4.159 5 C -0.156 4.156 6 C -0.146 4.146 7 C -0.102 4.102 8 H 0.119 0.881 9 C -0.200 4.200 10 C 0.298 3.702 11 O -0.402 6.402 12 O -0.267 6.267 13 C 0.013 3.987 14 C 0.003 3.997 15 C -0.520 4.520 16 H 0.104 0.896 17 C -0.126 4.126 18 N -0.519 5.519 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.217 1.217 22 H -0.185 1.185 23 C -0.237 4.237 24 C -0.215 4.215 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.100 0.900 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.764 -7.721 -3.100 25.178 hybrid contribution -0.026 -1.014 0.266 1.049 sum -23.790 -8.735 -2.835 25.501 Atomic orbital electron populations 1.21782 0.96022 1.01498 1.01760 1.21551 0.95735 0.97126 1.02022 1.21629 0.95485 0.96619 1.02022 1.21611 0.95173 0.96812 1.02300 1.21634 0.94505 0.97011 1.02412 1.21551 0.95467 0.93876 1.03658 1.21007 0.88205 0.99380 1.01628 0.88053 1.21784 1.02154 1.00933 0.95116 1.23710 0.91738 0.79629 0.75134 1.90644 1.67829 1.36832 1.44897 1.86469 1.25049 1.48388 1.66840 1.23540 0.73505 0.99946 1.01745 1.19379 0.94025 0.90026 0.96304 1.20296 0.85108 0.95417 1.51132 0.89639 1.24999 0.94852 0.98825 0.93951 1.69896 1.04230 1.31447 1.46281 0.87167 0.78247 0.84608 0.79759 1.19946 1.21724 1.18474 1.23096 1.02745 1.05412 0.92460 1.22733 1.00848 0.96106 1.01840 0.92793 0.92798 0.92903 0.92087 0.92084 0.92030 0.92047 0.91888 0.91956 0.91747 0.91452 0.90547 0.91499 0.91561 0.91756 0.90809 0.91747 0.90714 0.92140 0.91031 0.89734 0.90003 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.13 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.82 5.21 -26.72 -0.14 -0.96 16 4 C -0.12 -0.95 5.22 -26.73 -0.14 -1.08 16 5 C -0.12 -0.97 4.97 -26.73 -0.13 -1.11 16 6 C -0.11 -1.20 4.24 -26.73 -0.11 -1.31 16 7 C -0.08 -1.03 2.82 -91.77 -0.26 -1.29 16 8 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 9 C -0.14 -1.49 8.77 37.16 0.33 -1.17 16 10 C 0.46 8.25 6.97 36.01 0.25 8.50 16 11 O -0.51 -10.90 16.08 -18.75 -0.30 -11.21 16 12 O -0.35 -7.11 8.50 -39.25 -0.33 -7.44 16 13 C 0.08 2.00 4.10 37.15 0.15 2.15 16 14 C 0.00 0.09 1.85 -155.66 -0.29 -0.20 16 15 C -0.48 -13.58 9.58 -34.44 -0.33 -13.91 16 16 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 17 C 0.08 2.24 5.42 -17.82 -0.10 2.15 16 18 N -0.88 -26.57 13.96 55.43 0.77 -25.80 16 19 Si 0.87 22.25 24.21 -169.99 -4.12 18.13 16 20 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.26 -6.41 6.36 56.52 0.36 -6.05 16 23 C -0.20 -4.32 9.67 -26.70 -0.26 -4.58 16 24 C -0.18 -3.73 9.63 -26.70 -0.26 -3.99 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.50 6.71 -51.93 -0.35 0.15 16 36 H 0.08 0.91 8.02 -51.93 -0.42 0.50 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.58 6.89 -51.93 -0.36 0.22 16 41 H 0.07 1.61 2.65 -51.93 -0.14 1.48 16 42 H 0.07 1.81 8.10 -51.93 -0.42 1.39 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.07 1.45 7.86 -51.93 -0.41 1.05 16 45 H 0.08 1.82 8.14 -51.92 -0.42 1.39 16 46 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 47 H 0.08 1.51 7.46 -51.93 -0.39 1.12 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -30.93 371.93 -8.29 -39.22 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -8.84 Total: -0.19 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -1.07 Total: -18.32 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.77 Total: -25.80 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.63 Total: -18.65 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.12 Total: 18.13 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.93 -8.29 -39.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.163 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds