Wall clock time and date at job start Tue Mar 31 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46745 * 2 1 4 4 C 1.53007 * 109.46915 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46662 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46795 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46843 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.46857 * 55.00800 * 7 6 5 9 9 C 1.52999 * 109.47842 * 295.00381 * 7 6 5 10 10 C 1.50702 * 109.46753 * 174.99945 * 7 6 5 11 11 O 1.20827 * 120.00187 * 33.73858 * 10 7 6 12 12 O 1.34225 * 120.00194 * 213.73015 * 10 7 6 13 13 C 1.45202 * 117.00433 * 183.27494 * 12 10 7 14 14 C 1.52994 * 109.47653 * 176.20830 * 13 12 10 15 15 C 1.50692 * 115.55196 * 186.25038 * 14 13 12 16 16 H 1.08004 * 120.00252 * 144.43676 * 15 14 13 17 17 C 1.37882 * 120.00034 * 324.43485 * 15 14 13 18 18 N 1.31512 * 119.99986 * 167.95715 * 17 15 14 19 19 Si 1.86801 * 119.99885 * 347.95393 * 17 15 14 20 20 H 1.48503 * 109.46797 * 95.36727 * 19 17 15 21 21 H 1.48493 * 109.47042 * 215.36484 * 19 17 15 22 22 H 1.48500 * 109.47014 * 335.36759 * 19 17 15 23 23 C 1.53004 * 117.49671 * 40.57505 * 14 13 12 24 24 C 1.53003 * 117.49706 * 331.92271 * 14 13 12 25 25 H 1.08995 * 109.47346 * 299.99706 * 1 2 3 26 26 H 1.09001 * 109.47532 * 60.00313 * 1 2 3 27 27 H 1.09002 * 109.46676 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47346 * 240.00293 * 2 1 3 29 29 H 1.09001 * 109.47532 * 119.99687 * 2 1 3 30 30 H 1.08995 * 109.46959 * 60.00057 * 3 2 1 31 31 H 1.09002 * 109.47241 * 299.99733 * 3 2 1 32 32 H 1.08993 * 109.46866 * 59.99943 * 4 3 2 33 33 H 1.09002 * 109.46895 * 299.99879 * 4 3 2 34 34 H 1.09004 * 109.47151 * 60.00235 * 5 4 3 35 35 H 1.08996 * 109.47609 * 299.99879 * 5 4 3 36 36 H 1.09004 * 109.46776 * 60.00376 * 6 5 4 37 37 H 1.08996 * 109.47246 * 300.00472 * 6 5 4 38 38 H 1.08991 * 109.47495 * 186.39378 * 9 7 6 39 39 H 1.09003 * 109.46592 * 306.39881 * 9 7 6 40 40 H 1.09001 * 109.46776 * 66.38701 * 9 7 6 41 41 H 1.09007 * 109.46579 * 296.21025 * 13 12 10 42 42 H 1.09000 * 109.46884 * 56.19909 * 13 12 10 43 43 H 0.97001 * 119.99783 * 179.97438 * 18 17 15 44 44 H 1.08993 * 117.50277 * 0.02562 * 23 14 13 45 45 H 1.09009 * 117.49469 * 145.02008 * 23 14 13 46 46 H 1.09004 * 117.49617 * 214.98118 * 24 14 13 47 47 H 1.09001 * 117.49595 * 359.97010 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0798 2.8852 0.0000 6 6 5.6099 2.8853 0.0000 7 6 6.1197 4.3278 0.0000 8 1 5.6851 4.8667 0.8419 9 6 5.7149 5.0120 -1.3072 10 6 7.6216 4.3297 0.1239 11 8 8.2705 3.4438 -0.3802 12 8 8.2386 5.3156 0.7939 13 6 9.6904 5.2931 0.8109 14 6 10.2113 6.5359 1.5353 15 6 11.7057 6.7272 1.5052 16 1 12.1217 7.7219 1.4414 17 6 12.5421 5.6324 1.5592 18 7 13.8234 5.7702 1.2969 19 14 11.8553 3.9534 2.0051 20 1 11.5445 3.2002 0.7636 21 1 12.8598 3.2032 2.8009 22 1 10.6157 4.1223 2.8052 23 6 9.4670 6.9832 2.7951 24 6 9.3375 7.7914 1.5016 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9290 -0.8908 33 1 3.9337 0.9287 0.8891 34 1 3.7168 3.3985 0.8905 35 1 3.7161 3.3996 -0.8895 36 1 5.9732 2.3719 -0.8903 37 1 5.9733 2.3710 0.8897 38 1 6.1731 5.9997 -1.3575 39 1 6.0530 4.4112 -2.1516 40 1 4.6301 5.1123 -1.3440 41 1 10.0338 4.3987 1.3309 42 1 10.0656 5.2850 -0.2124 43 1 14.4119 5.0000 1.3353 44 1 8.6065 6.3919 3.1079 45 1 10.0584 7.4162 3.6020 46 1 9.8437 8.7558 1.4580 47 1 8.3918 7.7321 0.9629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277462.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:12 Heat of formation + Delta-G solvation = -111.605794 kcal Electronic energy + Delta-G solvation = -22314.693532 eV Core-core repulsion = 19075.727075 eV Total energy + Delta-G solvation = -3238.966457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.76690 -39.14977 -37.84251 -36.94903 -35.90450 -34.45176 -32.76452 -29.73585 -28.92926 -27.53764 -26.17443 -24.23866 -23.11069 -22.12195 -21.83914 -21.13518 -20.86171 -18.96638 -18.77091 -17.67112 -17.28082 -16.89189 -16.63426 -15.78709 -15.69178 -15.34087 -14.95133 -14.75101 -14.70391 -14.41680 -14.08552 -13.65177 -13.60536 -13.36484 -13.10791 -13.02976 -12.77325 -12.66434 -12.51654 -12.39273 -12.10473 -12.04829 -12.02670 -11.86043 -11.75407 -11.55682 -11.49819 -11.41066 -11.27385 -11.21657 -11.10242 -10.68810 -10.31335 -8.48410 -6.44006 1.09279 1.18871 1.22124 1.27641 1.62918 2.14765 2.71229 3.32834 3.52481 3.62860 3.84766 3.91566 3.97380 4.06288 4.08684 4.12042 4.18195 4.30239 4.35587 4.44231 4.49705 4.60983 4.62705 4.73058 4.80864 4.83123 4.89745 4.92730 4.95393 4.98686 4.99439 5.01467 5.12964 5.17960 5.21123 5.22079 5.31338 5.32357 5.44044 5.45940 5.52758 5.53365 5.56486 5.57121 6.16852 6.55358 6.65932 7.14515 8.67829 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027859 B = 0.003057 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.837959 B = 9157.240960 C = 9619.338748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C -0.116 4.116 4 C -0.121 4.121 5 C -0.110 4.110 6 C -0.105 4.105 7 C -0.074 4.074 8 H 0.126 0.874 9 C -0.141 4.141 10 C 0.449 3.551 11 O -0.550 6.550 12 O -0.347 6.347 13 C 0.094 3.906 14 C -0.035 4.035 15 C -0.485 4.485 16 H 0.053 0.947 17 C 0.030 3.970 18 N -0.927 5.927 19 Si 0.928 3.072 20 H -0.283 1.283 21 H -0.284 1.284 22 H -0.245 1.245 23 C -0.182 4.182 24 C -0.155 4.155 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.109 0.891 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.271 0.729 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.840 -7.382 -2.522 28.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C -0.153 4.153 4 C -0.159 4.159 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.093 4.093 8 H 0.144 0.856 9 C -0.198 4.198 10 C 0.294 3.706 11 O -0.440 6.440 12 O -0.263 6.263 13 C 0.021 3.979 14 C -0.036 4.036 15 C -0.523 4.523 16 H 0.071 0.929 17 C -0.170 4.170 18 N -0.566 5.566 19 Si 0.756 3.244 20 H -0.209 1.209 21 H -0.211 1.211 22 H -0.170 1.170 23 C -0.219 4.219 24 C -0.192 4.192 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.128 0.872 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -27.417 -7.710 -2.667 28.605 hybrid contribution 1.058 -0.962 0.080 1.432 sum -26.359 -8.672 -2.586 27.869 Atomic orbital electron populations 1.21779 0.95452 1.01784 1.02010 1.21565 0.96263 0.97084 1.01748 1.21591 0.94536 0.96741 1.02464 1.21599 0.95965 0.96572 1.01773 1.21594 0.91913 0.97473 1.03702 1.21556 0.97605 0.92682 1.02447 1.21258 0.83488 1.00834 1.03752 0.85622 1.21843 1.04393 1.00114 0.93402 1.25037 0.93829 0.78222 0.73514 1.90634 1.69037 1.38057 1.46261 1.86470 1.22803 1.49428 1.67552 1.23049 0.75790 0.98805 1.00250 1.19265 0.92343 0.92501 0.99512 1.20463 0.87735 0.93944 1.50135 0.92913 1.25646 0.95019 1.02072 0.94253 1.69996 1.05508 1.32573 1.48477 0.86261 0.78163 0.80695 0.79243 1.20950 1.21125 1.17014 1.23086 1.02311 1.04706 0.91823 1.22807 1.00670 0.94614 1.01065 0.92582 0.92487 0.92670 0.92341 0.92458 0.91642 0.91468 0.92417 0.92633 0.90524 0.89973 0.91954 0.92725 0.91971 0.92576 0.87215 0.93252 0.92608 0.91930 0.88950 0.89817 0.89826 0.87752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.80 16 2 C -0.13 -1.47 5.93 30.60 0.18 -1.29 16 3 C -0.12 -1.29 5.21 30.60 0.16 -1.13 16 4 C -0.12 -1.63 5.22 30.60 0.16 -1.47 16 5 C -0.11 -1.44 4.97 30.60 0.15 -1.28 16 6 C -0.11 -2.11 4.24 30.60 0.13 -1.98 16 7 C -0.07 -1.63 2.82 -11.54 -0.03 -1.67 16 8 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 9 C -0.14 -2.47 8.77 71.98 0.63 -1.84 16 10 C 0.45 15.57 6.97 71.24 0.50 16.07 16 11 O -0.55 -23.21 16.08 21.96 0.35 -22.86 16 12 O -0.35 -13.31 8.50 -51.37 -0.44 -13.75 16 13 C 0.09 4.38 4.10 71.98 0.30 4.68 16 14 C -0.04 -1.69 1.85 -52.93 -0.10 -1.78 16 15 C -0.49 -27.85 9.58 25.60 0.25 -27.61 16 16 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 17 C 0.03 1.77 5.42 84.66 0.46 2.23 16 18 N -0.93 -57.57 13.96 21.45 0.30 -57.27 16 19 Si 0.93 46.84 24.21 68.60 1.66 48.50 16 20 H -0.28 -14.55 7.11 99.48 0.71 -13.84 16 21 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 22 H -0.25 -11.67 6.36 99.48 0.63 -11.04 16 23 C -0.18 -7.40 9.67 30.62 0.30 -7.10 16 24 C -0.15 -6.10 9.63 30.62 0.29 -5.81 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.08 0.86 6.71 -2.39 -0.02 0.85 16 36 H 0.06 1.42 8.02 -2.38 -0.02 1.40 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.17 6.89 -2.39 -0.02 1.16 16 41 H 0.05 2.45 2.65 -2.38 -0.01 2.44 16 42 H 0.06 2.75 8.10 -2.39 -0.02 2.73 16 43 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.09 3.40 7.86 -2.39 -0.02 3.38 16 45 H 0.08 3.42 8.14 -2.38 -0.02 3.40 16 46 H 0.08 3.27 8.14 -2.38 -0.02 3.25 16 47 H 0.10 3.60 7.46 -2.39 -0.02 3.58 16 Total: -1.00 -68.36 371.93 6.79 -61.57 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.83 Total: 14.59 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: 4.08 Total: -30.78 kcal Atomic # 7 Polarization: -57.57 SS G_CDS: 0.30 Total: -57.27 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.08 Total: -36.61 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.66 Total: 48.50 kcal Total: -68.36 6.79 -61.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277462.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.039 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds