Wall clock time and date at job start Tue Mar 31 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47445 * 2 1 4 4 C 1.53002 * 109.47415 * 119.99874 * 2 1 3 5 5 H 1.09002 * 109.47070 * 300.00053 * 4 2 1 6 6 C 1.52997 * 109.46817 * 59.99873 * 4 2 1 7 7 C 1.52999 * 109.47317 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 4 9 9 H 1.09002 * 109.46935 * 299.99411 * 8 7 6 10 10 C 1.50699 * 109.47155 * 179.97438 * 8 7 6 11 11 O 1.20829 * 120.00087 * 359.97438 * 10 8 7 12 12 O 1.34226 * 120.00092 * 179.97438 * 10 8 7 13 13 C 1.45204 * 117.00034 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47303 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47172 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46566 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00505 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99538 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99920 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99858 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47011 * 60.00611 * 20 18 16 22 22 H 1.48506 * 109.46956 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47583 * 300.00438 * 20 18 16 24 24 C 1.52997 * 109.47452 * 59.99536 * 8 7 6 25 25 C 1.53000 * 109.47233 * 179.97438 * 4 2 1 26 26 H 1.09002 * 109.47045 * 300.00058 * 1 2 3 27 27 H 1.08998 * 109.47171 * 59.99399 * 1 2 3 28 28 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47497 * 240.00226 * 2 1 3 30 30 H 1.09002 * 109.46589 * 59.99669 * 3 2 1 31 31 H 1.08996 * 109.47165 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46726 * 300.00265 * 3 2 1 33 33 H 1.08996 * 109.47853 * 300.00202 * 6 4 2 34 34 H 1.09002 * 109.47153 * 60.00231 * 6 4 2 35 35 H 1.09002 * 109.46716 * 60.00091 * 7 6 4 36 36 H 1.09000 * 109.47486 * 180.02562 * 7 6 4 37 37 H 1.09002 * 109.47079 * 300.00126 * 13 12 10 38 38 H 1.09002 * 109.47347 * 59.99979 * 13 12 10 39 39 H 1.09002 * 109.46899 * 299.99922 * 14 13 12 40 40 H 1.09002 * 109.47193 * 59.99571 * 14 13 12 41 41 H 1.08992 * 109.47098 * 299.99222 * 15 14 13 42 42 H 1.08992 * 109.46835 * 60.00233 * 15 14 13 43 43 H 0.97000 * 120.00038 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.46695 * 59.99734 * 24 8 7 45 45 H 1.08993 * 109.47194 * 179.97438 * 24 8 7 46 46 H 1.08992 * 109.47399 * 300.00166 * 25 4 2 47 47 H 1.09004 * 109.46724 * 60.00652 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2493 7 6 2.0406 -2.8852 2.4981 8 6 3.5706 -2.8851 2.4975 9 1 3.9336 -3.3988 1.6073 10 6 4.0735 -3.5952 3.7279 11 8 3.2886 -4.0539 4.5239 12 8 5.3932 -3.7182 3.9396 13 6 5.8054 -4.4146 5.1452 14 6 7.3334 -4.4545 5.2140 15 6 7.7677 -5.1878 6.4847 16 6 9.2727 -5.2276 6.5521 17 1 9.8606 -4.7755 5.7669 18 6 9.8991 -5.8411 7.6161 19 7 9.1832 -6.3920 8.5719 20 14 11.7645 -5.8911 7.6993 21 1 12.2963 -4.5048 7.7209 22 1 12.1861 -6.6027 8.9328 23 1 12.2942 -6.6060 6.5104 24 6 4.0806 -1.4427 2.4975 25 6 3.5701 -0.7218 1.2489 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 0.4401 -2.1638 1.2493 34 1 1.8934 -2.6775 0.3593 35 1 1.6776 -2.3715 3.3883 36 1 1.6776 -3.9130 2.4979 37 1 5.4163 -3.8909 6.0184 38 1 5.4154 -5.4324 5.1283 39 1 7.7228 -4.9780 4.3409 40 1 7.7230 -3.4367 5.2311 41 1 7.3783 -4.6639 7.3576 42 1 7.3781 -6.2056 6.4680 43 1 9.6238 -6.8234 9.3207 44 1 3.7176 -0.9290 3.3877 45 1 5.1706 -1.4427 2.4975 46 1 3.9330 -1.2358 0.3590 47 1 3.9337 0.3058 1.2487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753454785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:00 Heat of formation + Delta-G solvation = -147.377308 kcal Electronic energy + Delta-G solvation = -22138.260769 eV Core-core repulsion = 18897.743144 eV Total energy + Delta-G solvation = -3240.517626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.59889 -39.07314 -36.51149 -35.18536 -33.96696 -31.72986 -31.17814 -30.18102 -27.48433 -27.09013 -24.56542 -23.10657 -22.62407 -21.22887 -20.36128 -20.05207 -19.79610 -17.37488 -16.67642 -16.37827 -16.06315 -15.48010 -14.71569 -14.51211 -14.47365 -14.27551 -13.99890 -13.66276 -13.44532 -13.19765 -12.67487 -12.55465 -12.26372 -12.12783 -12.02850 -11.89579 -11.79167 -11.56512 -11.43635 -11.33894 -11.00091 -10.94453 -10.69787 -10.66614 -10.61329 -10.51842 -10.34190 -10.13737 -10.08109 -9.70363 -9.46843 -9.16745 -8.38085 -6.02905 -4.06046 2.39532 2.94304 3.32697 3.36927 3.39584 4.29134 4.32945 4.42523 4.44758 4.64396 4.69568 4.85148 4.96934 5.07014 5.13272 5.22994 5.25940 5.27390 5.28452 5.32807 5.34581 5.49155 5.53646 5.60013 5.63990 5.65330 5.69128 5.74472 5.78561 5.87333 5.89232 5.97234 5.99230 6.03071 6.05854 6.15347 6.25012 6.55244 6.55431 6.88230 7.00315 7.60703 7.72118 7.95103 7.99915 8.36576 8.99979 9.58049 11.08494 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039648 B = 0.002418 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.050000 B =11578.317267 C =12101.226782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.086 4.086 5 H 0.071 0.929 6 C -0.114 4.114 7 C -0.104 4.104 8 C -0.079 4.079 9 H 0.106 0.894 10 C 0.459 3.541 11 O -0.514 6.514 12 O -0.357 6.357 13 C 0.067 3.933 14 C -0.108 4.108 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.112 4.112 25 C -0.114 4.114 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.821 13.320 -18.566 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.104 4.104 5 H 0.090 0.910 6 C -0.152 4.152 7 C -0.141 4.141 8 C -0.098 4.098 9 H 0.124 0.876 10 C 0.301 3.699 11 O -0.402 6.402 12 O -0.274 6.274 13 C -0.006 4.006 14 C -0.146 4.146 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.149 4.149 25 C -0.151 4.151 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.005 13.066 -18.120 28.075 hybrid contribution 0.986 -0.256 0.362 1.081 sum -16.019 12.810 -17.758 27.130 Atomic orbital electron populations 1.21906 0.95409 1.01864 1.01564 1.21141 0.95623 0.96142 0.98135 1.21909 1.01328 0.95971 1.01561 1.21274 0.95359 0.95707 0.98084 0.91014 1.21660 1.00714 0.95089 0.97704 1.21438 0.92099 1.01702 0.98893 1.21090 0.97100 0.97013 0.94587 0.87642 1.23698 0.81287 0.77346 0.87534 1.90645 1.57062 1.45959 1.46546 1.86497 1.24803 1.70505 1.45570 1.23483 0.98043 0.95766 0.83268 1.21755 0.89086 1.01893 1.01866 1.19047 0.96406 0.95295 0.90569 1.21137 0.91448 1.36442 1.06973 0.92485 1.25038 0.98477 0.95354 0.95649 1.69958 1.35434 1.37262 1.10715 0.86597 0.85467 0.78227 0.77356 1.20177 1.21268 1.20183 1.21523 1.01712 0.92596 0.99108 1.21641 0.95027 1.00740 0.97683 0.92752 0.92980 0.92339 0.91259 0.92744 0.92255 0.92987 0.91178 0.91763 0.91022 0.91054 0.91639 0.91633 0.92190 0.92186 0.96258 0.96266 0.92839 0.91418 0.90205 0.91595 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.84 37.16 0.33 -0.54 16 2 C -0.09 -0.56 2.51 -90.62 -0.23 -0.79 16 3 C -0.15 -0.88 8.84 37.16 0.33 -0.55 16 4 C -0.09 -0.60 1.78 -90.62 -0.16 -0.76 16 5 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 6 C -0.11 -0.84 4.85 -26.73 -0.13 -0.97 16 7 C -0.10 -1.02 4.49 -26.73 -0.12 -1.14 16 8 C -0.08 -0.85 2.63 -91.77 -0.24 -1.10 16 9 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 10 C 0.46 7.08 7.25 36.01 0.26 7.34 16 11 O -0.51 -9.38 15.73 -18.75 -0.29 -9.68 16 12 O -0.36 -6.09 10.12 -39.25 -0.40 -6.49 16 13 C 0.07 1.28 5.47 37.16 0.20 1.48 16 14 C -0.11 -2.29 5.53 -26.73 -0.15 -2.44 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 20 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.11 -1.06 5.13 -26.76 -0.14 -1.20 16 25 C -0.11 -0.83 4.85 -26.76 -0.13 -0.96 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.33 6.43 -51.93 -0.33 -0.01 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 38 H 0.07 1.26 8.13 -51.93 -0.42 0.83 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -31.03 368.05 -9.06 -40.08 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -8.90 Total: -5.12 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -0.72 Total: -14.72 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.74 Total: -26.28 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.69 Total: -16.16 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.03 -9.06 -40.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753454785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.293 kcal (2) G-P(sol) polarization free energy of solvation -31.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds