Wall clock time and date at job start Tue Mar 31 2020 06:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47445 * 2 1 4 4 C 1.53002 * 109.47415 * 119.99874 * 2 1 3 5 5 H 1.09002 * 109.47070 * 300.00053 * 4 2 1 6 6 C 1.52997 * 109.46817 * 59.99873 * 4 2 1 7 7 C 1.52999 * 109.47317 * 179.97438 * 6 4 2 8 8 C 1.53005 * 109.47159 * 300.00546 * 7 6 4 9 9 H 1.09002 * 109.46935 * 299.99411 * 8 7 6 10 10 C 1.50699 * 109.47155 * 179.97438 * 8 7 6 11 11 O 1.20829 * 120.00087 * 359.97438 * 10 8 7 12 12 O 1.34226 * 120.00092 * 179.97438 * 10 8 7 13 13 C 1.45204 * 117.00034 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47303 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47172 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46566 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00505 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99538 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99920 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99858 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47011 * 60.00611 * 20 18 16 22 22 H 1.48506 * 109.46956 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47583 * 300.00438 * 20 18 16 24 24 C 1.52997 * 109.47452 * 59.99536 * 8 7 6 25 25 C 1.53000 * 109.47233 * 179.97438 * 4 2 1 26 26 H 1.09002 * 109.47045 * 300.00058 * 1 2 3 27 27 H 1.08998 * 109.47171 * 59.99399 * 1 2 3 28 28 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47497 * 240.00226 * 2 1 3 30 30 H 1.09002 * 109.46589 * 59.99669 * 3 2 1 31 31 H 1.08996 * 109.47165 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46726 * 300.00265 * 3 2 1 33 33 H 1.08996 * 109.47853 * 300.00202 * 6 4 2 34 34 H 1.09002 * 109.47153 * 60.00231 * 6 4 2 35 35 H 1.09002 * 109.46716 * 60.00091 * 7 6 4 36 36 H 1.09000 * 109.47486 * 180.02562 * 7 6 4 37 37 H 1.09002 * 109.47079 * 300.00126 * 13 12 10 38 38 H 1.09002 * 109.47347 * 59.99979 * 13 12 10 39 39 H 1.09002 * 109.46899 * 299.99922 * 14 13 12 40 40 H 1.09002 * 109.47193 * 59.99571 * 14 13 12 41 41 H 1.08992 * 109.47098 * 299.99222 * 15 14 13 42 42 H 1.08992 * 109.46835 * 60.00233 * 15 14 13 43 43 H 0.97000 * 120.00038 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.46695 * 59.99734 * 24 8 7 45 45 H 1.08993 * 109.47194 * 179.97438 * 24 8 7 46 46 H 1.08992 * 109.47399 * 300.00166 * 25 4 2 47 47 H 1.09004 * 109.46724 * 60.00652 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2493 7 6 2.0406 -2.8852 2.4981 8 6 3.5706 -2.8851 2.4975 9 1 3.9336 -3.3988 1.6073 10 6 4.0735 -3.5952 3.7279 11 8 3.2886 -4.0539 4.5239 12 8 5.3932 -3.7182 3.9396 13 6 5.8054 -4.4146 5.1452 14 6 7.3334 -4.4545 5.2140 15 6 7.7677 -5.1878 6.4847 16 6 9.2727 -5.2276 6.5521 17 1 9.8606 -4.7755 5.7669 18 6 9.8991 -5.8411 7.6161 19 7 9.1832 -6.3920 8.5719 20 14 11.7645 -5.8911 7.6993 21 1 12.2963 -4.5048 7.7209 22 1 12.1861 -6.6027 8.9328 23 1 12.2942 -6.6060 6.5104 24 6 4.0806 -1.4427 2.4975 25 6 3.5701 -0.7218 1.2489 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 0.4401 -2.1638 1.2493 34 1 1.8934 -2.6775 0.3593 35 1 1.6776 -2.3715 3.3883 36 1 1.6776 -3.9130 2.4979 37 1 5.4163 -3.8909 6.0184 38 1 5.4154 -5.4324 5.1283 39 1 7.7228 -4.9780 4.3409 40 1 7.7230 -3.4367 5.2311 41 1 7.3783 -4.6639 7.3576 42 1 7.3781 -6.2056 6.4680 43 1 9.6238 -6.8234 9.3207 44 1 3.7176 -0.9290 3.3877 45 1 5.1706 -1.4427 2.4975 46 1 3.9330 -1.2358 0.3590 47 1 3.9337 0.3058 1.2487 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753454785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:59 Heat of formation + Delta-G solvation = -161.620583 kcal Electronic energy + Delta-G solvation = -22138.878404 eV Core-core repulsion = 18897.743144 eV Total energy + Delta-G solvation = -3241.135261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.79423 -39.87731 -37.88243 -35.98294 -35.87270 -33.69574 -31.87428 -30.96250 -28.97049 -27.93903 -25.83187 -24.59975 -23.34513 -22.22142 -22.15983 -20.75952 -20.58285 -18.77775 -18.42636 -17.68520 -17.51491 -16.51492 -16.38728 -15.66390 -15.29123 -15.13865 -14.81302 -14.54317 -14.45931 -14.22976 -14.07130 -13.76361 -13.72411 -13.31047 -13.01609 -12.80839 -12.78476 -12.58684 -12.50600 -12.40285 -12.26865 -12.09089 -12.00974 -11.98071 -11.73832 -11.57030 -11.43455 -11.40224 -11.25814 -11.25185 -10.86185 -10.75299 -10.57884 -8.22528 -6.34475 1.13479 1.40875 1.44514 1.52242 1.66363 2.40922 3.11052 3.47015 3.65946 3.70591 3.92339 3.96898 4.04134 4.07386 4.11405 4.29514 4.38124 4.38714 4.42298 4.55859 4.60547 4.68105 4.72019 4.77221 4.85037 4.88497 4.89918 5.05250 5.06393 5.08914 5.12548 5.16310 5.19567 5.24715 5.27361 5.33301 5.39928 5.44303 5.47759 5.52908 5.61545 5.62052 5.69735 5.78481 6.17627 6.68468 6.81258 7.35002 8.89502 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039648 B = 0.002418 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.050000 B =11578.317267 C =12101.226782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.083 4.083 5 H 0.063 0.937 6 C -0.107 4.107 7 C -0.101 4.101 8 C -0.072 4.072 9 H 0.127 0.873 10 C 0.455 3.545 11 O -0.545 6.545 12 O -0.356 6.356 13 C 0.077 3.923 14 C -0.092 4.092 15 C 0.026 3.974 16 C -0.544 4.544 17 H 0.066 0.934 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.284 1.284 23 H -0.265 1.265 24 C -0.109 4.109 25 C -0.108 4.108 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.067 0.933 41 H -0.005 1.005 42 H -0.004 1.004 43 H 0.265 0.735 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.244 14.372 -20.754 30.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 C -0.208 4.208 4 C -0.102 4.102 5 H 0.082 0.918 6 C -0.145 4.145 7 C -0.139 4.139 8 C -0.090 4.090 9 H 0.145 0.855 10 C 0.300 3.700 11 O -0.435 6.435 12 O -0.272 6.272 13 C 0.003 3.997 14 C -0.130 4.130 15 C -0.012 4.012 16 C -0.582 4.582 17 H 0.084 0.916 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.209 1.209 23 H -0.190 1.190 24 C -0.147 4.147 25 C -0.145 4.145 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.014 0.986 42 H 0.014 0.986 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.437 14.135 -20.333 29.722 hybrid contribution 0.727 -0.578 1.053 1.404 sum -15.710 13.557 -19.280 28.325 Atomic orbital electron populations 1.21910 0.95226 1.02028 1.01624 1.21104 0.95749 0.96145 0.97642 1.21913 1.01447 0.95829 1.01616 1.21244 0.95124 0.95459 0.98355 0.91844 1.21633 1.01195 0.95031 0.96600 1.21432 0.91256 1.01439 0.99732 1.21283 0.97664 0.97445 0.92657 0.85494 1.24743 0.80197 0.76622 0.88433 1.90634 1.57477 1.47423 1.48012 1.86495 1.26145 1.70274 1.44316 1.23110 0.96689 0.95743 0.84162 1.21448 0.90527 1.01541 0.99490 1.18934 0.95752 0.94301 0.92165 1.21590 0.92660 1.36525 1.07393 0.91591 1.26045 1.04118 0.94759 0.95148 1.70099 1.37761 1.38095 1.11434 0.85416 0.78681 0.78777 0.77669 1.18979 1.20942 1.18989 1.21531 1.01462 0.91643 1.00071 1.21623 0.95150 1.01006 0.96719 0.93165 0.92497 0.92131 0.90707 0.93148 0.92061 0.92527 0.90375 0.90546 0.92505 0.91898 0.92267 0.92170 0.91413 0.91435 0.98613 0.98598 0.92668 0.92349 0.90577 0.90463 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.84 71.98 0.64 -0.80 16 2 C -0.09 -0.86 2.51 -10.79 -0.03 -0.89 16 3 C -0.15 -1.45 8.84 71.98 0.64 -0.81 16 4 C -0.08 -0.99 1.78 -10.79 -0.02 -1.01 16 5 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 6 C -0.11 -1.35 4.85 30.59 0.15 -1.20 16 7 C -0.10 -1.88 4.49 30.60 0.14 -1.74 16 8 C -0.07 -1.46 2.63 -11.54 -0.03 -1.49 16 9 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 10 C 0.46 13.95 7.25 71.24 0.52 14.46 16 11 O -0.55 -20.24 15.73 21.95 0.35 -19.89 16 12 O -0.36 -11.96 10.12 -51.38 -0.52 -12.48 16 13 C 0.08 2.95 5.47 71.98 0.39 3.34 16 14 C -0.09 -3.91 5.53 30.59 0.17 -3.74 16 15 C 0.03 1.37 4.97 29.85 0.15 1.52 16 16 C -0.54 -31.03 9.11 25.60 0.23 -30.79 16 17 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 18 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 19 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 20 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 24 C -0.11 -1.92 5.13 30.58 0.16 -1.76 16 25 C -0.11 -1.32 4.85 30.58 0.15 -1.17 16 26 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.55 6.43 -2.39 -0.02 0.53 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.56 6.43 -2.39 -0.02 0.55 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.89 6.43 -2.39 -0.02 0.87 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 36 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 37 H 0.06 2.34 8.13 -2.39 -0.02 2.32 16 38 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 39 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 43 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.41 8.11 -2.39 -0.02 1.39 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.08 0.88 6.43 -2.39 -0.02 0.86 16 Total: -1.00 -66.84 368.05 6.74 -60.09 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.90 Total: 8.90 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 3.71 Total: -25.79 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.28 Total: -57.04 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.17 Total: -32.38 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.84 6.74 -60.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753454785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.529 kcal (2) G-P(sol) polarization free energy of solvation -66.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds