Wall clock time and date at job start Tue Mar 31 2020 05:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99816 * 2 1 4 4 C 1.50699 * 109.47349 * 270.00066 * 3 2 1 5 5 H 1.07997 * 119.99874 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99819 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00574 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99652 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47384 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47204 * 120.00249 * 8 6 4 11 11 H 1.48498 * 109.47309 * 240.00130 * 8 6 4 12 12 C 1.34778 * 120.00078 * 179.97438 * 2 1 3 13 13 O 1.21280 * 119.99913 * 179.97438 * 12 2 1 14 14 C 1.50697 * 119.99846 * 0.02562 * 12 2 1 15 15 C 1.53002 * 109.47076 * 179.97438 * 14 12 2 16 16 N 1.46897 * 109.46993 * 180.02562 * 15 14 12 17 17 C 1.48557 * 111.00155 * 290.12397 * 16 15 14 18 18 C 1.54383 * 104.59869 * 200.96166 * 17 16 15 19 19 H 1.08991 * 118.15697 * 244.15107 * 18 17 16 20 20 C 1.52997 * 118.12491 * 87.22808 * 18 17 16 21 21 C 1.52994 * 60.54734 * 268.33706 * 20 18 17 22 22 C 1.52999 * 119.52594 * 248.26494 * 21 20 18 23 23 O 1.42903 * 109.47256 * 250.23565 * 22 21 20 24 24 C 1.52152 * 110.66523 * 174.64125 * 16 15 14 25 25 H 1.09001 * 109.46862 * 270.00122 * 1 2 3 26 26 H 1.09002 * 109.47205 * 30.00010 * 1 2 3 27 27 H 1.08998 * 109.47015 * 150.00091 * 1 2 3 28 28 H 1.09001 * 109.47353 * 30.00206 * 3 2 1 29 29 H 1.09000 * 109.47332 * 149.99771 * 3 2 1 30 30 H 0.97000 * 119.99956 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47266 * 59.99968 * 14 12 2 32 32 H 1.08996 * 109.47368 * 299.99728 * 14 12 2 33 33 H 1.09004 * 109.46762 * 60.00073 * 15 14 12 34 34 H 1.08996 * 109.47137 * 300.00282 * 15 14 12 35 35 H 1.09000 * 110.41016 * 82.18307 * 17 16 15 36 36 H 1.08996 * 110.51457 * 319.79484 * 17 16 15 37 37 H 1.09002 * 117.43993 * 160.68810 * 20 18 17 38 38 H 1.09000 * 117.40787 * 16.00066 * 20 18 17 39 39 H 1.08997 * 109.47286 * 130.23125 * 22 21 20 40 40 H 1.09008 * 109.47201 * 10.22905 * 22 21 20 41 41 H 0.96700 * 114.00311 * 180.02562 * 23 22 21 42 42 H 1.09000 * 110.22559 * 41.38741 * 24 16 15 43 43 H 1.08999 * 112.21703 * 277.82446 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8780 -1.6726 7 7 3.5532 3.6182 -0.6731 8 14 3.4379 3.4170 -3.4338 9 1 2.8609 2.4165 -4.3673 10 1 2.7998 4.7373 -3.6678 11 1 4.9005 3.5259 -3.6665 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0001 14 6 1.3855 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0005 16 7 1.6452 -4.9074 -0.0001 17 6 0.9653 -5.1302 1.3018 18 6 0.7196 -6.6534 1.3568 19 1 -0.3109 -7.0081 1.3685 20 6 1.8298 -7.5431 1.9196 21 6 1.7787 -7.2643 0.4162 22 6 1.4386 -8.4006 -0.5503 23 8 2.6039 -8.7548 -1.2979 24 6 2.6042 -6.0811 -0.1331 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6085 2.0284 0.5139 29 1 3.1499 1.1385 0.5139 30 1 4.0300 4.4441 -0.8503 31 1 0.7591 -2.5302 -0.8897 32 1 0.7585 -2.5299 0.8903 33 1 3.0063 -3.5774 0.8906 34 1 3.0064 -3.5774 -0.8894 35 1 0.0185 -4.5911 1.3334 36 1 1.6069 -4.8187 2.1261 37 1 1.5513 -8.5422 2.2550 38 1 2.6189 -7.0580 2.4940 39 1 0.6541 -8.0743 -1.2331 40 1 1.0922 -9.2663 0.0142 41 1 2.4616 -9.4705 -1.9325 42 1 3.4887 -5.9166 0.4823 43 1 2.8896 -6.2648 -1.1689 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782621137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:14 Heat of formation + Delta-G solvation = -70.988460 kcal Electronic energy + Delta-G solvation = -22189.343330 eV Core-core repulsion = 18848.597829 eV Total energy + Delta-G solvation = -3340.745500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15460 -40.50313 -37.49627 -36.65953 -35.81292 -34.73452 -31.88288 -29.88444 -29.64845 -27.37345 -26.97118 -26.36549 -24.53616 -22.52435 -21.61046 -20.26117 -19.71390 -18.71900 -18.18776 -17.93783 -17.18238 -16.84531 -16.76352 -16.13800 -16.05195 -15.39326 -15.32068 -15.02970 -14.46761 -14.08960 -13.95586 -13.87769 -13.65154 -13.56625 -13.44714 -13.29753 -13.12116 -12.82520 -12.65770 -12.38970 -12.24190 -12.20893 -11.91956 -11.90441 -11.68494 -11.26630 -11.08317 -10.66577 -10.64348 -10.49184 -9.53936 -9.42729 -8.24098 -6.39194 1.35239 1.37869 1.49917 1.82163 2.26411 2.40387 2.51818 2.93657 3.05355 3.23952 3.52996 3.75260 3.80687 3.92975 4.03234 4.15708 4.21081 4.22221 4.39298 4.42870 4.52036 4.57946 4.63173 4.71700 4.78517 4.83614 4.86843 4.90094 4.95140 4.97511 5.03641 5.06075 5.08392 5.21371 5.25886 5.55171 5.63574 5.83168 5.90115 6.04731 6.68280 6.77966 6.96649 7.26638 7.46991 8.83258 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029016 B = 0.003077 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.743645 B = 9096.812715 C = 9573.476892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.257 3.743 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.267 1.267 11 H -0.282 1.282 12 C 0.493 3.507 13 O -0.603 6.603 14 C -0.110 4.110 15 C 0.068 3.932 16 N -0.509 5.509 17 C 0.049 3.951 18 C -0.138 4.138 19 H 0.143 0.857 20 C -0.140 4.140 21 C -0.154 4.154 22 C 0.127 3.873 23 O -0.592 6.592 24 C 0.070 3.930 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.025 0.975 29 H -0.004 1.004 30 H 0.267 0.733 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.026 0.974 34 H 0.059 0.941 35 H 0.106 0.894 36 H 0.040 0.960 37 H 0.125 0.875 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.398 0.602 42 H 0.035 0.965 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.817 -25.061 3.211 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.192 1.192 11 H -0.208 1.208 12 C 0.282 3.718 13 O -0.485 6.485 14 C -0.150 4.150 15 C -0.061 4.061 16 N -0.234 5.234 17 C -0.078 4.078 18 C -0.156 4.156 19 H 0.161 0.839 20 C -0.177 4.177 21 C -0.155 4.155 22 C 0.049 3.951 23 O -0.401 6.401 24 C -0.057 4.057 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.043 0.957 29 H 0.014 0.986 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.059 0.941 37 H 0.143 0.857 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.248 0.752 42 H 0.053 0.947 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.265 -24.344 3.155 27.009 hybrid contribution 1.139 0.539 -0.386 1.318 sum -10.126 -23.805 2.769 26.017 Atomic orbital electron populations 1.21955 0.77666 1.04094 1.02680 1.48205 1.08552 1.06328 1.71103 1.18762 0.91080 0.80521 0.96050 1.21742 1.36827 1.06528 0.93050 0.92890 1.25891 0.94868 0.96411 1.02138 1.70058 1.38981 1.14847 1.33042 0.85338 0.77884 0.78447 0.78955 1.19112 1.19214 1.20754 1.21381 0.87785 0.86780 0.75828 1.90632 1.16835 1.88292 1.52734 1.21481 0.98643 0.88601 1.06306 1.21769 0.94707 0.88968 1.00660 1.66526 1.24634 1.00663 1.31544 1.22820 1.00300 0.94969 0.89711 1.23623 0.96780 0.92183 1.03036 0.83934 1.23347 0.99780 1.01446 0.93100 1.22438 1.03296 0.97642 0.92104 1.21410 0.86779 0.94442 0.92425 1.86448 1.36424 1.59657 1.57542 1.23052 0.92959 0.88357 1.01310 0.90959 0.91605 0.88652 0.95745 0.98609 0.92363 0.86639 0.86583 0.95556 0.92219 0.87607 0.94145 0.85673 0.89852 0.92621 0.91370 0.75222 0.94701 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.33 10.24 127.77 1.31 3.64 16 2 N -0.61 -26.64 2.86 -851.12 -2.43 -29.07 16 3 C 0.26 14.33 5.16 85.63 0.44 14.77 16 4 C -0.54 -32.19 9.39 25.60 0.24 -31.95 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.34 5.46 84.65 0.46 0.80 16 7 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 8 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 12 C 0.49 21.22 7.67 87.66 0.67 21.89 16 13 O -0.60 -32.58 15.56 -3.03 -0.05 -32.63 16 14 C -0.11 -3.21 4.31 29.85 0.13 -3.08 16 15 C 0.07 2.07 4.13 86.30 0.36 2.43 16 16 N -0.51 -12.43 5.44 -871.13 -4.74 -17.17 16 17 C 0.05 0.94 5.55 86.45 0.48 1.42 16 18 C -0.14 -2.04 7.03 -9.90 -0.07 -2.11 16 19 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 20 C -0.14 -2.03 9.81 30.59 0.30 -1.73 16 21 C -0.15 -2.75 2.69 -51.29 -0.14 -2.89 16 22 C 0.13 1.78 7.34 71.98 0.53 2.31 16 23 O -0.59 -9.67 12.94 -148.98 -1.93 -11.60 16 24 C 0.07 1.70 6.16 85.72 0.53 2.23 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 27 H 0.10 2.16 6.44 -2.39 -0.02 2.15 16 28 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 29 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16 30 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.12 2.96 7.40 -2.38 -0.02 2.94 16 32 H 0.12 2.63 7.22 -2.39 -0.02 2.62 16 33 H 0.03 0.88 7.84 -2.38 -0.02 0.86 16 34 H 0.06 2.10 8.09 -2.39 -0.02 2.08 16 35 H 0.11 1.65 7.76 -2.39 -0.02 1.63 16 36 H 0.04 0.84 7.83 -2.39 -0.02 0.82 16 37 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.64 8.04 -2.38 -0.02 0.62 16 41 H 0.40 2.61 9.12 -74.06 -0.68 1.94 16 42 H 0.03 0.93 8.03 -2.39 -0.02 0.91 16 43 H 0.08 2.21 7.55 -2.39 -0.02 2.19 16 Total: -1.00 -79.79 351.60 -1.27 -81.06 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.32 Total: 10.87 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 5.24 Total: 7.73 kcal Atomic # 7 Polarization: -96.45 SS G_CDS: -6.88 Total: -103.33 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.97 Total: -44.23 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -79.79 -1.27 -81.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782621137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.075 kcal (2) G-P(sol) polarization free energy of solvation -79.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds