Wall clock time and date at job start Tue Mar 31 2020 06:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46738 * 2 1 4 4 C 1.52993 * 109.47538 * 239.99710 * 2 1 3 5 5 C 1.52998 * 109.47538 * 180.02562 * 4 2 1 6 6 C 1.53003 * 109.46680 * 59.99864 * 5 4 2 7 7 H 1.08999 * 109.47187 * 60.00701 * 6 5 4 8 8 O 1.45205 * 109.46836 * 180.02562 * 6 5 4 9 9 C 1.34235 * 116.99860 * 270.00030 * 8 6 5 10 10 O 1.20825 * 120.00129 * 0.02562 * 9 8 6 11 11 C 1.50698 * 119.99907 * 179.97438 * 9 8 6 12 12 C 1.52996 * 109.47188 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47131 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47184 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.52993 * 109.47246 * 300.00315 * 6 5 4 24 24 H 1.09005 * 109.47262 * 299.99572 * 23 6 5 25 25 C 1.53002 * 109.47146 * 180.02562 * 23 6 5 26 26 C 1.52998 * 109.47538 * 60.00210 * 23 6 5 27 27 H 1.08993 * 109.47614 * 300.00379 * 1 2 3 28 28 H 1.09002 * 109.47020 * 60.00651 * 1 2 3 29 29 H 1.09006 * 109.47073 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47262 * 300.00638 * 4 2 1 31 31 H 1.09002 * 109.47260 * 59.99786 * 4 2 1 32 32 H 1.08999 * 109.46738 * 300.00290 * 5 4 2 33 33 H 1.08996 * 109.47283 * 180.02562 * 5 4 2 34 34 H 1.09001 * 109.46665 * 60.00343 * 11 9 8 35 35 H 1.09004 * 109.47371 * 300.00359 * 11 9 8 36 36 H 1.09001 * 109.46997 * 60.00596 * 12 11 9 37 37 H 1.09004 * 109.47298 * 300.00453 * 12 11 9 38 38 H 1.09001 * 109.46832 * 60.00325 * 13 12 11 39 39 H 1.09001 * 109.47502 * 299.99847 * 13 12 11 40 40 H 1.09001 * 109.47002 * 60.00426 * 14 13 12 41 41 H 1.08993 * 109.46955 * 299.99989 * 14 13 12 42 42 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 43 43 H 1.08999 * 109.47233 * 59.99400 * 25 23 6 44 44 H 1.08996 * 109.47515 * 179.97438 * 25 23 6 45 45 H 1.08999 * 109.46930 * 300.00168 * 25 23 6 46 46 H 1.08999 * 109.46738 * 59.99710 * 26 23 6 47 47 H 1.08996 * 109.47283 * 179.97438 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7218 -1.2488 6 6 4.0794 -1.4434 0.0006 7 1 3.7158 -2.4709 0.0003 8 8 5.5315 -1.4434 0.0012 9 6 6.1411 -2.4791 -0.5968 10 8 5.4833 -3.3563 -1.1043 11 6 7.6460 -2.5471 -0.6361 12 6 8.0802 -3.8180 -1.3691 13 6 9.6080 -3.8873 -1.4084 14 6 10.0422 -5.1579 -2.1420 15 6 11.5471 -5.2260 -2.1813 16 1 12.1351 -4.4416 -1.7280 17 6 12.1733 -6.2900 -2.7951 18 7 11.4573 -7.2453 -3.3467 19 14 14.0388 -6.3747 -2.8431 20 1 14.4602 -7.6078 -3.5553 21 1 14.5692 -6.3977 -1.4563 22 1 14.5701 -5.1856 -3.5566 23 6 3.5693 -0.7221 1.2497 24 1 3.9331 0.3054 1.2500 25 6 4.0792 -1.4433 2.4990 26 6 2.0394 -0.7216 1.2494 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.9337 0.3057 -1.2486 33 1 3.9334 -1.2353 -2.1389 34 1 8.0356 -2.5642 0.3818 35 1 8.0357 -1.6741 -1.1597 36 1 7.6906 -3.8013 -2.3870 37 1 7.6905 -4.6908 -0.8451 38 1 9.9973 -3.9042 -0.3904 39 1 9.9981 -3.0146 -1.9322 40 1 9.6530 -5.1406 -3.1601 41 1 9.6522 -6.0308 -1.6187 42 1 10.4886 -7.2015 -3.3214 43 1 5.1692 -1.4434 2.4991 44 1 3.7163 -0.9293 3.3889 45 1 3.7159 -2.4710 2.4990 46 1 1.6757 -1.7491 1.2491 47 1 1.6760 -0.2081 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805885601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:44 Heat of formation + Delta-G solvation = -153.002678 kcal Electronic energy + Delta-G solvation = -22198.432053 eV Core-core repulsion = 18957.670493 eV Total energy + Delta-G solvation = -3240.761560 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81392 -38.98069 -36.43020 -35.12890 -33.48490 -32.89797 -31.84432 -29.74741 -27.00425 -26.61934 -25.24329 -23.03680 -22.31163 -21.00352 -20.57449 -20.30398 -20.07596 -17.59329 -16.71886 -16.45763 -16.39553 -15.25705 -14.91230 -14.77759 -14.42625 -14.01360 -13.80172 -13.68830 -13.19486 -12.89731 -12.88466 -12.69739 -12.54669 -12.45618 -12.28478 -12.20716 -11.79947 -11.39330 -11.19467 -11.11669 -11.03650 -10.98712 -10.88269 -10.75134 -10.66208 -10.60468 -10.32344 -10.12665 -10.09058 -9.77946 -9.63719 -8.48231 -8.27977 -6.31312 -4.00074 2.29742 2.64627 3.46172 3.48555 3.67295 4.21273 4.22479 4.37759 4.56557 4.59170 4.66643 4.76871 4.92425 5.00586 5.05873 5.07180 5.18082 5.22292 5.23831 5.30411 5.39700 5.43456 5.46005 5.48811 5.57426 5.60805 5.66226 5.73232 5.76874 5.79326 5.88168 5.92726 5.97062 5.99439 6.07721 6.12256 6.35515 6.50660 6.64904 6.82087 7.01045 7.47435 7.60175 7.84362 8.27220 8.51548 8.93672 9.72579 11.09395 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045192 B = 0.002360 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.427356 B =11860.116850 C =12137.126527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.136 4.136 6 C 0.093 3.907 7 H 0.084 0.916 8 O -0.355 6.355 9 C 0.459 3.541 10 O -0.506 6.506 11 C -0.112 4.112 12 C -0.109 4.109 13 C -0.103 4.103 14 C 0.007 3.993 15 C -0.602 4.602 16 H 0.048 0.952 17 C 0.012 3.988 18 N -0.914 5.914 19 Si 1.069 2.931 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.288 1.288 23 C -0.086 4.086 24 H 0.081 0.919 25 C -0.149 4.149 26 C -0.107 4.107 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.269 0.731 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.292 17.374 9.952 29.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.174 4.174 6 C 0.038 3.962 7 H 0.102 0.898 8 O -0.272 6.272 9 C 0.302 3.698 10 O -0.394 6.394 11 C -0.150 4.150 12 C -0.146 4.146 13 C -0.141 4.141 14 C -0.030 4.030 15 C -0.640 4.640 16 H 0.066 0.934 17 C -0.192 4.192 18 N -0.550 5.550 19 Si 0.898 3.102 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.215 1.215 23 C -0.105 4.105 24 H 0.099 0.901 25 C -0.207 4.207 26 C -0.144 4.144 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.254 16.195 9.275 27.541 hybrid contribution -1.404 0.907 0.473 1.737 sum -21.658 17.102 9.747 29.267 Atomic orbital electron populations 1.21821 0.94985 1.01947 1.01712 1.21205 0.95659 0.99823 0.94771 0.90926 1.21545 0.94169 1.01190 0.97899 1.21940 0.96295 1.01504 0.97651 1.22755 0.76874 1.00967 0.95598 0.89835 1.86564 1.22838 1.46402 1.71434 1.24148 0.92570 0.78742 0.74317 1.90652 1.67225 1.38704 1.42772 1.21577 0.86277 1.02602 1.04514 1.21575 0.98122 0.94654 1.00287 1.21517 0.91331 1.00595 1.00615 1.19225 0.96864 0.92182 0.94758 1.22074 0.91624 1.09956 1.40379 0.93357 1.25874 1.07090 0.92698 0.93510 1.70771 1.08242 1.33655 1.42372 0.83542 0.74283 0.76072 0.76325 1.20804 1.21477 1.21482 1.21214 0.95405 1.00423 0.93444 0.90091 1.21821 1.01993 1.00225 0.96637 1.21656 0.93554 1.01258 0.97970 0.92633 0.92610 0.92605 0.91585 0.91298 0.90946 0.91190 0.87943 0.87922 0.91642 0.91641 0.93037 0.93040 0.97470 0.97469 0.92071 0.91805 0.92312 0.92747 0.91573 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 2 C -0.10 -0.63 2.72 -90.62 -0.25 -0.88 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.11 -0.86 5.20 -26.74 -0.14 -1.00 16 5 C -0.14 -1.33 5.56 -26.73 -0.15 -1.48 16 6 C 0.09 1.01 1.88 -26.73 -0.05 0.96 16 7 H 0.08 1.04 7.16 -51.93 -0.37 0.66 16 8 O -0.35 -4.50 9.21 -39.27 -0.36 -4.86 16 9 C 0.46 6.71 7.93 36.00 0.29 7.00 16 10 O -0.51 -8.88 15.20 -18.75 -0.29 -9.17 16 11 C -0.11 -1.54 5.81 -27.89 -0.16 -1.70 16 12 C -0.11 -1.91 4.50 -26.73 -0.12 -2.04 16 13 C -0.10 -2.13 5.15 -26.73 -0.14 -2.26 16 14 C 0.01 0.18 4.28 -27.88 -0.12 0.06 16 15 C -0.60 -17.60 9.11 -34.44 -0.31 -17.91 16 16 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 17 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 18 N -0.91 -28.83 13.65 55.43 0.76 -28.08 16 19 Si 1.07 25.77 29.90 -169.99 -5.08 20.69 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 C -0.09 -0.73 2.47 -90.62 -0.22 -0.95 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 25 C -0.15 -1.26 9.05 37.16 0.34 -0.92 16 26 C -0.11 -0.73 4.48 -26.73 -0.12 -0.85 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 37 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 41 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 42 H 0.27 8.48 7.22 -40.82 -0.29 8.18 16 43 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -32.65 372.52 -9.40 -42.05 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -9.13 Total: -4.03 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -0.92 Total: -22.22 kcal Atomic # 7 Polarization: -28.83 SS G_CDS: 0.76 Total: -28.08 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.65 Total: -14.03 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.65 -9.40 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805885601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.950 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds