Wall clock time and date at job start Tue Mar 31 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47042 * 2 1 4 4 C 1.52995 * 109.47382 * 120.00251 * 2 1 3 5 5 C 1.52997 * 109.47060 * 59.99852 * 4 2 1 6 6 C 1.53003 * 109.46883 * 180.02562 * 5 4 2 7 7 C 1.53008 * 109.47046 * 175.00129 * 6 5 4 8 8 O 1.45193 * 109.47238 * 180.02562 * 7 6 5 9 9 C 1.34233 * 116.99929 * 180.02562 * 8 7 6 10 10 O 1.20820 * 119.99676 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99659 * 180.02562 * 9 8 7 12 12 C 1.53003 * 109.46707 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47038 * 180.02562 * 12 11 9 14 14 H 1.08006 * 120.00159 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00120 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 C 1.52997 * 109.46888 * 60.00497 * 5 4 2 22 22 C 1.53000 * 109.47354 * 299.99665 * 21 5 4 23 23 H 1.09001 * 109.46931 * 300.00166 * 22 21 5 24 24 C 1.52997 * 109.47354 * 179.97438 * 22 21 5 25 25 C 1.52999 * 109.46952 * 59.99937 * 22 21 5 26 26 H 1.08998 * 109.47675 * 299.99572 * 1 2 3 27 27 H 1.08999 * 109.47454 * 59.99726 * 1 2 3 28 28 H 1.09005 * 109.47182 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46950 * 300.00029 * 4 2 1 30 30 H 1.09001 * 109.47211 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47472 * 300.00285 * 5 4 2 32 32 H 1.09001 * 109.47269 * 55.00377 * 6 5 4 33 33 H 1.09000 * 109.47502 * 294.99999 * 6 5 4 34 34 H 1.09001 * 109.46884 * 60.00012 * 7 6 5 35 35 H 1.08991 * 109.47091 * 300.00379 * 7 6 5 36 36 H 1.08996 * 109.47466 * 59.99984 * 11 9 8 37 37 H 1.08996 * 109.47158 * 299.99764 * 11 9 8 38 38 H 1.09003 * 109.46825 * 60.00385 * 12 11 9 39 39 H 1.08996 * 109.47396 * 299.99958 * 12 11 9 40 40 H 0.96998 * 119.99255 * 0.02562 * 16 15 13 41 41 H 1.09001 * 109.47237 * 59.99644 * 21 5 4 42 42 H 1.09005 * 109.47170 * 179.97438 * 21 5 4 43 43 H 1.08993 * 109.46999 * 299.99803 * 24 22 21 44 44 H 1.08993 * 109.46945 * 60.00151 * 24 22 21 45 45 H 1.08999 * 109.46809 * 179.97438 * 24 22 21 46 46 H 1.09003 * 109.47606 * 180.02562 * 25 22 21 47 47 H 1.09001 * 109.47115 * 60.00342 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5300 -2.1637 1.2491 6 6 2.0396 -2.8848 2.4987 7 6 1.4295 -4.2865 2.5630 8 8 1.9126 -4.9706 3.7491 9 6 1.4692 -6.2208 3.9546 10 8 0.7026 -6.7265 3.1695 11 6 1.9269 -6.9931 5.1650 12 6 1.2782 -8.3789 5.1610 13 6 1.7353 -9.1510 6.3717 14 1 2.4204 -8.6988 7.0736 15 6 1.2799 -10.4351 6.5828 16 7 0.4461 -10.9860 5.7279 17 14 1.8460 -11.3919 8.0840 18 1 3.0792 -12.1498 7.7519 19 1 0.7797 -12.3388 8.4986 20 1 2.1291 -10.4481 9.1949 21 6 2.0401 -2.8849 -0.0001 22 6 1.5301 -2.1637 -1.2494 23 1 0.4401 -2.1638 -1.2494 24 6 2.0407 -2.8845 -2.4986 25 6 2.0400 -0.7212 -1.2493 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6767 -0.2074 2.1392 30 1 3.1300 -0.7209 1.2493 31 1 0.4400 -2.1638 1.2491 32 1 1.7509 -2.3218 3.3862 33 1 3.1259 -2.9631 2.4555 34 1 1.7183 -4.8495 1.6755 35 1 0.3433 -4.2083 2.6062 36 1 1.6352 -6.4584 6.0689 37 1 3.0114 -7.0992 5.1396 38 1 1.5696 -8.9138 4.2571 39 1 0.1937 -8.2725 5.1865 40 1 0.1519 -10.4890 4.9486 41 1 3.1301 -2.8848 -0.0001 42 1 1.6771 -3.9128 0.0000 43 1 3.1306 -2.8840 -2.4984 44 1 1.6778 -3.9122 -2.4989 45 1 1.6769 -2.3709 -3.3885 46 1 1.6763 -0.2071 -2.1391 47 1 3.1300 -0.7211 -1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812615443.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:08 Heat of formation + Delta-G solvation = -165.976424 kcal Electronic energy + Delta-G solvation = -22204.773593 eV Core-core repulsion = 18963.449448 eV Total energy + Delta-G solvation = -3241.324144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.60681 -40.52862 -37.89919 -36.02987 -35.06334 -34.04232 -33.04858 -29.99293 -27.68767 -27.52991 -27.37051 -25.03228 -23.94937 -22.22402 -21.79827 -21.22299 -19.62027 -19.24808 -18.33491 -17.84705 -17.30864 -16.26905 -16.26207 -15.62630 -15.53934 -15.35942 -15.10742 -14.81530 -14.63457 -14.27590 -13.98487 -13.72173 -13.55754 -13.37602 -13.07978 -12.90042 -12.74761 -12.70590 -12.51391 -12.45827 -12.16357 -12.12401 -11.92256 -11.86963 -11.84821 -11.66880 -11.59314 -11.48402 -11.10585 -10.90359 -10.78494 -10.69903 -10.57541 -8.72054 -6.44365 1.12256 1.54606 1.64037 1.65458 1.82598 2.58920 3.14756 3.57033 3.64242 3.70991 3.85469 3.91637 4.02651 4.19549 4.22845 4.25462 4.27758 4.29113 4.39089 4.46002 4.48252 4.57353 4.64709 4.73806 4.80005 4.83264 4.86717 4.88825 4.98151 5.00627 5.05514 5.07972 5.17485 5.20316 5.23359 5.27227 5.30953 5.34394 5.38970 5.44077 5.47918 5.52876 5.65663 5.88357 6.15026 6.47639 6.72313 7.40863 8.68404 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038383 B = 0.002446 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.307026 B =11445.881666 C =11786.751410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 H 0.078 0.922 4 C -0.104 4.104 5 C -0.080 4.080 6 C -0.104 4.104 7 C 0.057 3.943 8 O -0.357 6.357 9 C 0.464 3.536 10 O -0.547 6.547 11 C -0.089 4.089 12 C 0.022 3.978 13 C -0.619 4.619 14 H 0.069 0.931 15 C -0.044 4.044 16 N -0.939 5.939 17 Si 1.127 2.873 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.261 1.261 21 C -0.115 4.115 22 C -0.093 4.093 23 H 0.068 0.932 24 C -0.148 4.148 25 C -0.105 4.105 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.116 0.884 38 H -0.014 1.014 39 H -0.014 1.014 40 H 0.253 0.747 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.066 0.934 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.204 25.879 -12.347 29.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 H 0.096 0.904 4 C -0.141 4.141 5 C -0.099 4.099 6 C -0.141 4.141 7 C -0.017 4.017 8 O -0.273 6.273 9 C 0.310 3.690 10 O -0.437 6.437 11 C -0.126 4.126 12 C -0.015 4.015 13 C -0.657 4.657 14 H 0.087 0.913 15 C -0.240 4.240 16 N -0.576 5.576 17 Si 0.947 3.053 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.185 1.185 21 C -0.152 4.152 22 C -0.111 4.111 23 H 0.086 0.914 24 C -0.206 4.206 25 C -0.143 4.143 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.005 0.995 39 H 0.005 0.995 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.833 24.352 -11.842 27.506 hybrid contribution -0.410 1.003 -1.353 1.733 sum 4.423 25.355 -13.194 28.923 Atomic orbital electron populations 1.21952 0.95451 1.01784 1.01762 1.21097 0.95844 0.99351 0.94536 0.90361 1.21561 1.00907 0.93486 0.98158 1.21099 1.00699 0.95397 0.92671 1.21612 1.01604 0.91184 0.99716 1.23365 0.99148 0.94148 0.85018 1.86506 1.66927 1.27662 1.46245 1.24447 0.77210 0.80096 0.87293 1.90612 1.35199 1.70160 1.47757 1.21374 1.03494 0.94593 0.93146 1.18974 0.94521 0.91809 0.96182 1.22464 1.31315 1.02140 1.09752 0.91252 1.27662 0.93917 0.97558 1.04910 1.70875 1.32721 1.40703 1.13323 0.82831 0.76137 0.74807 0.71515 1.19639 1.21184 1.18487 1.21746 1.01014 0.98329 0.94154 1.21152 1.00366 0.95365 0.94214 0.91358 1.21834 1.01276 0.99945 0.97524 1.21602 1.00582 0.94372 0.97713 0.92637 0.92487 0.92785 0.91305 0.91396 0.90879 0.90013 0.90254 0.91796 0.92107 0.86620 0.86615 0.99540 0.99525 0.93775 0.91590 0.93329 0.92551 0.93545 0.92014 0.91554 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.50 71.98 0.61 -1.19 16 2 C -0.09 -1.02 3.19 -10.79 -0.03 -1.05 16 3 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.10 -1.29 4.73 30.59 0.14 -1.14 16 5 C -0.08 -1.25 1.91 -10.79 -0.02 -1.28 16 6 C -0.10 -1.95 5.06 30.60 0.15 -1.80 16 7 C 0.06 1.52 5.22 71.98 0.38 1.90 16 8 O -0.36 -11.73 10.22 -51.44 -0.53 -12.25 16 9 C 0.46 18.78 7.96 71.24 0.57 19.35 16 10 O -0.55 -26.06 15.73 21.98 0.35 -25.71 16 11 C -0.09 -3.67 5.75 29.85 0.17 -3.50 16 12 C 0.02 1.22 3.57 29.85 0.11 1.33 16 13 C -0.62 -35.35 9.11 25.60 0.23 -35.12 16 14 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 15 C -0.04 -2.57 5.46 84.65 0.46 -2.10 16 16 N -0.94 -60.54 13.65 21.45 0.29 -60.25 16 17 Si 1.13 50.04 29.90 68.60 2.05 52.10 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 21 C -0.11 -1.90 4.24 30.59 0.13 -1.77 16 22 C -0.09 -1.32 2.45 -10.79 -0.03 -1.35 16 23 H 0.07 1.04 6.43 -2.39 -0.02 1.02 16 24 C -0.15 -2.08 9.19 71.98 0.66 -1.42 16 25 C -0.11 -1.23 4.73 30.60 0.14 -1.09 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.05 0.73 4.81 -2.38 -0.01 0.72 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 1.21 6.43 -2.39 -0.02 1.19 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.78 6.56 -2.39 -0.02 1.77 16 35 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 36 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 37 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 38 H -0.01 -0.83 7.97 -2.39 -0.02 -0.85 16 39 H -0.01 -0.82 7.97 -2.39 -0.02 -0.84 16 40 H 0.25 16.87 7.22 -92.71 -0.67 16.20 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 0.96 6.57 -2.38 -0.02 0.94 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -70.40 363.86 6.85 -63.54 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 1.01 Total: 12.79 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 3.68 Total: -30.22 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.29 Total: -60.25 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -0.18 Total: -37.97 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.10 kcal Total: -70.40 6.85 -63.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615443.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.433 kcal (2) G-P(sol) polarization free energy of solvation -70.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds