Wall clock time and date at job start Tue Mar 31 2020 06:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52672 * 1 3 3 H 1.11118 * 106.72610 * 2 1 4 4 C 1.52240 * 110.84908 * 116.15034 * 2 1 3 5 5 C 1.52720 * 111.03182 * 74.29954 * 4 2 1 6 6 H 1.08739 * 110.28265 * 298.69925 * 5 4 2 7 7 C 1.53347 * 109.14933 * 179.21073 * 5 4 2 8 8 C 1.53006 * 109.47010 * 65.83879 * 7 5 4 9 9 O 1.45196 * 109.47172 * 180.02562 * 8 7 5 10 10 C 1.34226 * 117.00225 * 179.97438 * 9 8 7 11 11 O 1.20830 * 119.99784 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00267 * 179.97438 * 10 9 8 13 13 C 1.53008 * 109.47103 * 180.02562 * 12 10 9 14 14 C 1.50694 * 109.46735 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00622 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99479 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00609 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99958 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47779 * 89.99506 * 18 16 14 20 20 H 1.48506 * 109.47172 * 210.00009 * 18 16 14 21 21 H 1.48504 * 109.46999 * 329.99101 * 18 16 14 22 22 C 1.52809 * 109.12244 * 60.06208 * 5 4 2 23 23 C 1.52470 * 110.41486 * 298.70848 * 22 5 4 24 24 H 1.11010 * 106.99390 * 171.92016 * 23 22 5 25 25 C 1.52526 * 110.96819 * 288.26361 * 23 22 5 26 26 C 1.51819 * 111.95561 * 242.96921 * 2 1 3 27 27 H 1.09006 * 109.46893 * 183.67411 * 1 2 3 28 28 H 1.09001 * 109.47385 * 303.67114 * 1 2 3 29 29 H 1.08995 * 109.46942 * 63.67620 * 1 2 3 30 30 H 1.09367 * 109.50237 * 194.92645 * 4 2 1 31 31 H 1.09365 * 109.50534 * 313.67455 * 4 2 1 32 32 H 1.09002 * 109.47485 * 185.83735 * 7 5 4 33 33 H 1.09000 * 109.47546 * 305.84232 * 7 5 4 34 34 H 1.09002 * 109.46879 * 300.00227 * 8 7 5 35 35 H 1.09000 * 109.47021 * 60.00241 * 8 7 5 36 36 H 1.08999 * 109.47349 * 300.00004 * 12 10 9 37 37 H 1.09002 * 109.46927 * 60.00315 * 12 10 9 38 38 H 1.08999 * 109.46810 * 300.00075 * 13 12 10 39 39 H 1.08994 * 109.46693 * 59.99835 * 13 12 10 40 40 H 0.96990 * 120.00466 * 180.02562 * 17 16 14 41 41 H 1.09239 * 109.28112 * 178.19180 * 22 5 4 42 42 H 1.09234 * 109.29936 * 59.25108 * 22 5 4 43 43 H 1.08998 * 109.47225 * 179.48848 * 25 23 22 44 44 H 1.09005 * 109.47202 * 299.48708 * 25 23 22 45 45 H 1.08997 * 109.47642 * 59.49008 * 25 23 22 46 46 H 1.10051 * 108.82451 * 42.09899 * 26 2 1 47 47 H 1.10068 * 108.81366 * 157.75871 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5267 0.0000 0.0000 3 1 1.8465 1.0642 0.0000 4 6 2.0685 -0.6270 1.2771 5 6 1.9031 -2.1451 1.2553 6 1 0.8503 -2.4086 1.1889 7 6 2.4792 -2.7325 2.5493 8 6 1.6392 -2.2652 3.7398 9 8 2.1851 -2.8209 4.9651 10 6 1.5591 -2.5045 6.1096 11 8 0.5869 -1.7872 6.0881 12 6 2.0681 -3.0446 7.4211 13 6 1.1818 -2.5367 8.5603 14 6 1.6912 -3.0764 9.8718 15 1 2.5599 -3.7178 9.8910 16 6 1.0476 -2.7521 11.0472 17 7 -0.0105 -1.9714 11.0239 18 14 1.6794 -3.4204 12.6732 19 1 2.6710 -2.4747 13.2455 20 1 0.5444 -3.5792 13.6176 21 1 2.3249 -4.7389 12.4491 22 6 2.6697 -2.7151 0.0626 23 6 2.1126 -2.1585 -1.2429 24 1 2.7958 -2.4874 -2.0537 25 6 0.7413 -2.7525 -1.5484 26 6 2.0943 -0.6399 -1.2543 27 1 -0.3633 -1.0256 0.0659 28 1 -0.3634 0.5698 0.8553 29 1 -0.3633 0.4557 -0.9211 30 1 3.1294 -0.3828 1.3822 31 1 1.5332 -0.2198 2.1395 32 1 2.4586 -3.8210 2.4951 33 1 3.5078 -2.3944 2.6755 34 1 1.6599 -1.1767 3.7940 35 1 0.6107 -2.6033 3.6137 36 1 2.0428 -4.1341 7.3998 37 1 3.0926 -2.7080 7.5796 38 1 1.2067 -1.4472 8.5818 39 1 0.1575 -2.8737 8.4015 40 1 -0.4630 -1.7429 11.8508 41 1 2.5798 -3.8038 0.0630 42 1 3.7255 -2.4494 0.1517 43 1 0.3626 -2.3320 -2.4800 44 1 0.8279 -3.8346 -1.6469 45 1 0.0536 -2.5154 -0.7367 46 1 1.5103 -0.2989 -2.1224 47 1 3.1215 -0.2744 -1.4056 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812615445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:17 Heat of formation + Delta-G solvation = -146.158396 kcal Electronic energy + Delta-G solvation = -22241.957590 eV Core-core repulsion = 19001.492820 eV Total energy + Delta-G solvation = -3240.464770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.07079 -39.54873 -36.29616 -34.14426 -33.55825 -33.31067 -31.14285 -29.09424 -27.62527 -26.50260 -26.01566 -23.82431 -22.02448 -21.48122 -20.88479 -19.71560 -18.31170 -17.31063 -16.33382 -16.27694 -15.90759 -15.39740 -14.98139 -14.58534 -14.45997 -14.34616 -14.15722 -13.78054 -13.18235 -13.01412 -12.69358 -12.61982 -12.37117 -12.22538 -12.07532 -11.81438 -11.59031 -11.40986 -11.29754 -11.17952 -11.02980 -10.99041 -10.94505 -10.63661 -10.47020 -10.27808 -10.19550 -10.02861 -9.92591 -9.86643 -9.50180 -9.16264 -8.36745 -6.00504 -4.05341 2.87980 3.15220 3.32291 3.38526 3.41672 4.33274 4.34457 4.36052 4.45566 4.76935 4.80327 4.90831 4.92961 5.00363 5.03056 5.13623 5.26499 5.33287 5.34803 5.37665 5.42743 5.46519 5.51722 5.59058 5.66011 5.69552 5.71538 5.76111 5.76823 5.83998 5.93219 5.96803 6.05178 6.09903 6.13756 6.15115 6.23275 6.26741 6.27997 6.70041 6.99846 7.67902 7.75261 7.99439 8.28543 8.45726 9.01933 9.58609 11.10563 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042319 B = 0.002442 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.480417 B =11462.287524 C =11771.151776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.086 4.086 3 H 0.059 0.941 4 C -0.113 4.113 5 C -0.081 4.081 6 H 0.076 0.924 7 C -0.115 4.115 8 C 0.063 3.937 9 O -0.368 6.368 10 C 0.455 3.545 11 O -0.507 6.507 12 C -0.104 4.104 13 C 0.033 3.967 14 C -0.528 4.528 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.105 4.105 23 C -0.086 4.086 24 H 0.058 0.942 25 C -0.150 4.150 26 C -0.103 4.103 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 0.362 -26.778 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.104 4.104 3 H 0.077 0.923 4 C -0.151 4.151 5 C -0.100 4.100 6 H 0.094 0.906 7 C -0.153 4.153 8 C -0.011 4.011 9 O -0.286 6.286 10 C 0.299 3.701 11 O -0.394 6.394 12 C -0.141 4.141 13 C -0.004 4.004 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.143 4.143 23 C -0.104 4.104 24 H 0.077 0.923 25 C -0.207 4.207 26 C -0.140 4.140 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.506 0.687 -26.715 27.101 hybrid contribution 0.162 -0.154 0.846 0.875 sum 4.667 0.532 -25.869 26.292 Atomic orbital electron populations 1.21911 0.95182 1.02172 1.01475 1.20790 0.95759 0.99339 0.94511 0.92275 1.21568 1.01396 0.94829 0.97275 1.20977 1.00397 0.95233 0.93387 0.90583 1.21712 0.99964 1.01576 0.92033 1.22996 0.97575 0.98591 0.81965 1.86540 1.56982 1.69339 1.15776 1.24744 0.81364 0.78071 0.85904 1.90628 1.26320 1.35101 1.87349 1.21754 1.02725 1.01979 0.87660 1.19014 0.94473 0.97329 0.89618 1.21163 1.13423 1.30741 0.91284 0.92307 1.25028 0.94908 0.95128 0.99315 1.69991 1.19513 1.35795 1.27532 0.86539 0.78388 0.79346 0.83385 1.20604 1.21192 1.19792 1.21465 0.99440 0.99957 0.93395 1.20815 0.97267 0.94928 0.97394 0.92322 1.21867 0.97000 1.00331 1.01463 1.21257 1.00889 0.94593 0.97275 0.92180 0.92631 0.92953 0.91891 0.91571 0.90856 0.90897 0.91479 0.91770 0.89018 0.89023 0.95621 0.95606 0.92855 0.91850 0.91882 0.92927 0.92830 0.92041 0.92362 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 8.88 36.99 0.33 -0.84 16 2 C -0.09 -0.66 2.58 -91.78 -0.24 -0.90 16 3 H 0.06 0.46 8.29 -50.71 -0.42 0.04 16 4 C -0.11 -0.99 4.37 -27.26 -0.12 -1.11 16 5 C -0.08 -0.70 1.99 -90.68 -0.18 -0.88 16 6 H 0.08 0.68 6.26 -52.08 -0.33 0.35 16 7 C -0.12 -1.18 5.04 -26.55 -0.13 -1.32 16 8 C 0.06 0.87 5.23 37.16 0.19 1.06 16 9 O -0.37 -6.27 10.22 -39.25 -0.40 -6.67 16 10 C 0.46 9.26 7.96 36.01 0.29 9.55 16 11 O -0.51 -11.87 15.73 -18.75 -0.30 -12.16 16 12 C -0.10 -2.17 5.75 -27.88 -0.16 -2.33 16 13 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 14 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 18 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C -0.11 -0.78 4.61 -27.10 -0.12 -0.90 16 23 C -0.09 -0.59 2.59 -91.71 -0.24 -0.82 16 24 H 0.06 0.38 8.28 -50.77 -0.42 -0.04 16 25 C -0.15 -1.00 8.87 36.91 0.33 -0.67 16 26 C -0.10 -0.71 4.81 -27.90 -0.13 -0.84 16 27 H 0.06 0.47 4.89 -51.93 -0.25 0.22 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.06 0.54 8.17 -51.72 -0.42 0.12 16 31 H 0.07 0.65 6.52 -51.72 -0.34 0.31 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 35 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 36 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 38 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.06 0.46 8.14 -51.79 -0.42 0.03 16 42 H 0.06 0.46 8.16 -51.80 -0.42 0.04 16 43 H 0.05 0.32 8.10 -51.93 -0.42 -0.10 16 44 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.44 4.70 -51.93 -0.24 0.20 16 46 H 0.06 0.38 7.98 -51.33 -0.41 -0.03 16 47 H 0.06 0.38 8.23 -51.32 -0.42 -0.05 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -31.66 363.19 -8.85 -40.51 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -8.62 Total: -4.31 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.72 Total: -12.89 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.70 Total: -18.84 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.66 -8.85 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812615445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.647 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds