Wall clock time and date at job start Tue Mar 31 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36936 * 119.99472 * 2 1 4 4 H 1.08000 * 119.99788 * 203.13802 * 3 2 1 5 5 C 1.38808 * 120.00261 * 23.13928 * 3 2 1 6 6 N 1.31617 * 120.00047 * 13.43288 * 5 3 2 7 7 Si 1.86801 * 119.99886 * 193.42871 * 5 3 2 8 8 H 1.48502 * 109.46949 * 60.00307 * 7 5 3 9 9 H 1.48498 * 109.47110 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47420 * 300.00136 * 7 5 3 11 11 C 1.46495 * 119.99997 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47549 * 90.00134 * 11 2 1 13 13 H 1.09003 * 110.46965 * 57.36561 * 12 11 2 14 14 C 1.54086 * 110.52397 * 179.97438 * 12 11 2 15 15 N 1.47095 * 103.77808 * 118.76952 * 14 12 11 16 16 C 1.46496 * 125.56253 * 179.97438 * 15 14 12 17 17 C 1.53007 * 109.47301 * 240.00008 * 16 15 14 18 18 C 1.52996 * 109.47008 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.47275 * 60.00151 * 18 17 16 20 20 C 1.52994 * 109.47143 * 299.99790 * 19 18 17 21 21 C 1.52999 * 109.47429 * 119.99885 * 16 15 14 22 22 C 1.34005 * 108.88201 * 359.97438 * 15 14 12 23 23 O 1.21508 * 123.07500 * 179.97438 * 22 15 14 24 24 O 1.33772 * 113.85216 * 0.23320 * 22 15 14 25 25 H 1.08999 * 109.46959 * 275.14711 * 1 2 3 26 26 H 1.08994 * 109.47236 * 35.15004 * 1 2 3 27 27 H 1.09000 * 109.46588 * 155.14824 * 1 2 3 28 28 H 0.97005 * 120.00093 * 180.02562 * 6 5 3 29 29 H 1.09002 * 109.47025 * 329.99351 * 11 2 1 30 30 H 1.09004 * 109.46636 * 210.00171 * 11 2 1 31 31 H 1.09002 * 110.56598 * 0.19539 * 14 12 11 32 32 H 1.08999 * 110.56770 * 237.34286 * 14 12 11 33 33 H 1.09000 * 109.47239 * 359.97438 * 16 15 14 34 34 H 1.09000 * 109.46634 * 299.99954 * 17 16 15 35 35 H 1.09002 * 109.47078 * 59.99799 * 17 16 15 36 36 H 1.08993 * 109.47389 * 299.99549 * 18 17 16 37 37 H 1.09004 * 109.46803 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47260 * 179.97438 * 19 18 17 39 39 H 1.09007 * 109.47416 * 59.99543 * 19 18 17 40 40 H 1.09005 * 109.47265 * 300.00000 * 20 19 18 41 41 H 1.08996 * 109.47627 * 179.97438 * 20 19 18 42 42 H 1.09000 * 109.47080 * 299.99865 * 21 16 15 43 43 H 1.08999 * 109.46774 * 60.00036 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1645 1.2236 -0.3675 5 6 1.5393 2.3397 0.4724 6 7 0.4186 2.2580 1.1577 7 14 2.3086 4.0083 0.1355 8 1 2.3989 4.2248 -1.3308 9 1 1.4691 5.0721 0.7427 10 1 3.6697 4.0544 0.7274 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7098 -1.4431 13 1 3.0013 -0.9399 -1.9858 14 6 3.2235 -3.0436 -1.4719 15 7 2.3081 -3.9623 -2.1661 16 6 2.5739 -5.3740 -2.4536 17 6 2.5312 -5.6033 -3.9658 18 6 2.8093 -7.0775 -4.2661 19 6 1.7469 -7.9453 -3.5885 20 6 1.7896 -7.7161 -2.0764 21 6 1.5111 -6.2414 -1.7761 22 6 1.1914 -3.2974 -2.4925 23 8 0.2596 -3.8131 -3.0774 24 8 1.1986 -2.0125 -2.1205 25 1 -0.3633 0.0922 1.0235 26 1 -0.3633 0.8402 -0.5916 27 1 -0.3632 -0.9325 -0.4319 28 1 -0.0082 3.0643 1.4875 29 1 1.6085 -2.0285 0.5130 30 1 3.1500 -1.1385 0.5134 31 1 3.4215 -3.3934 -0.4587 32 1 4.1538 -2.9363 -2.0296 33 1 3.5593 -5.6430 -2.0734 34 1 1.5458 -5.3342 -4.3463 35 1 3.2883 -4.9854 -4.4485 36 1 3.7947 -7.3462 -3.8856 37 1 2.7784 -7.2410 -5.3433 38 1 1.9449 -8.9956 -3.8028 39 1 0.7614 -7.6767 -3.9690 40 1 2.7751 -7.9847 -1.6958 41 1 1.0325 -8.3339 -1.5936 42 1 1.5416 -6.0781 -0.6988 43 1 0.5258 -5.9723 -2.1567 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827863488.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:07 Heat of formation + Delta-G solvation = -61.630597 kcal Electronic energy + Delta-G solvation = -23278.349015 eV Core-core repulsion = 19938.009302 eV Total energy + Delta-G solvation = -3340.339713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31382 -38.60031 -36.88848 -35.31553 -34.72542 -31.79344 -30.93301 -30.45760 -28.92641 -25.90760 -25.38657 -23.46300 -22.77230 -22.58107 -21.05912 -20.52312 -19.45830 -17.25609 -16.68893 -16.54396 -16.06742 -15.13599 -15.09432 -14.70001 -14.40802 -14.23891 -13.92746 -13.72606 -13.39185 -13.31236 -12.93559 -12.73122 -12.44111 -12.33868 -11.91419 -11.67460 -11.61185 -11.28256 -11.18463 -10.89372 -10.81480 -10.69454 -10.55256 -10.43044 -10.35694 -10.09311 -10.00303 -9.90877 -9.88269 -8.73776 -8.55603 -6.79089 -5.74356 -3.23709 2.70307 3.10508 3.37025 3.43465 3.43923 3.90770 4.39530 4.44871 4.56674 4.57526 4.73684 4.83486 4.96696 5.10996 5.13119 5.30852 5.31730 5.34633 5.40265 5.41764 5.52135 5.58417 5.62209 5.81635 5.84609 5.87356 5.88478 6.01962 6.08635 6.11705 6.17292 6.28692 6.40124 6.51484 6.67647 6.93058 7.45957 7.72333 7.79442 7.81981 8.35918 8.39222 9.19602 9.82229 10.31866 11.29476 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041487 B = 0.003621 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.751148 B = 7731.694825 C = 7870.321398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.593 5.593 3 C -0.267 4.267 4 H 0.068 0.932 5 C 0.007 3.993 6 N -0.902 5.902 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.147 3.853 12 C 0.047 3.953 13 H 0.109 0.891 14 C 0.071 3.929 15 N -0.634 5.634 16 C 0.184 3.816 17 C -0.137 4.137 18 C -0.113 4.113 19 C -0.123 4.123 20 C -0.113 4.113 21 C -0.138 4.138 22 C 0.640 3.360 23 O -0.536 6.536 24 O -0.308 6.308 25 H 0.030 0.970 26 H 0.040 0.960 27 H 0.006 0.994 28 H 0.254 0.746 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.863 -18.777 -6.370 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.314 5.314 3 C -0.396 4.396 4 H 0.086 0.914 5 C -0.192 4.192 6 N -0.546 5.546 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.017 3.983 12 C -0.012 4.012 13 H 0.127 0.873 14 C -0.053 4.053 15 N -0.382 5.382 16 C 0.083 3.917 17 C -0.176 4.176 18 C -0.151 4.151 19 C -0.160 4.160 20 C -0.151 4.151 21 C -0.176 4.176 22 C 0.395 3.605 23 O -0.422 6.422 24 O -0.217 6.217 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.058 -18.660 -6.584 21.008 hybrid contribution 0.580 1.052 -0.113 1.207 sum 7.638 -17.608 -6.697 20.328 Atomic orbital electron populations 1.20802 0.81981 0.96151 0.99115 1.43812 1.02197 1.00038 1.85305 1.19117 0.98468 0.85687 1.36366 0.91413 1.25038 0.97793 0.98611 0.97792 1.70076 1.19604 1.27489 1.37413 0.86328 0.78376 0.83719 0.78024 1.20989 1.21594 1.20878 1.21045 0.97724 0.89896 0.89588 1.25237 0.81004 0.95120 0.99821 0.87302 1.22905 0.94176 0.89534 0.98715 1.48260 1.17980 1.11095 1.60833 1.20781 0.98898 0.76680 0.95376 1.21982 1.03788 0.96549 0.95246 1.21471 0.98883 0.94266 1.00465 1.21577 0.99762 0.99254 0.95437 1.21481 1.01710 0.95712 0.96195 1.21992 1.00719 0.94381 1.00528 1.18751 0.82838 0.80742 0.78148 1.90940 1.37444 1.68538 1.45305 1.87430 1.39770 1.24392 1.70107 0.95216 0.94168 0.97548 0.93573 0.93572 0.90857 0.89377 0.89896 0.89342 0.89961 0.91872 0.92017 0.91712 0.92032 0.91621 0.92011 0.91654 0.91684 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.23 8.80 59.85 0.53 4.76 16 2 N -0.59 -14.76 2.90 -181.12 -0.53 -15.29 16 3 C -0.27 -7.16 9.65 -15.06 -0.15 -7.30 16 4 H 0.07 1.71 7.86 -52.49 -0.41 1.30 16 5 C 0.01 0.19 5.09 -17.43 -0.09 0.10 16 6 N -0.90 -26.38 10.74 55.49 0.60 -25.79 16 7 Si 0.91 21.57 29.57 -169.99 -5.03 16.54 16 8 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 C 0.15 2.80 5.21 -4.05 -0.02 2.78 16 12 C 0.05 0.78 4.10 -26.17 -0.11 0.68 16 13 H 0.11 1.82 8.14 -51.93 -0.42 1.39 16 14 C 0.07 0.85 7.31 -3.15 -0.02 0.83 16 15 N -0.63 -8.78 2.85 -171.23 -0.49 -9.27 16 16 C 0.18 2.04 2.78 -67.93 -0.19 1.85 16 17 C -0.14 -1.50 5.22 -26.73 -0.14 -1.64 16 18 C -0.11 -0.94 5.92 -26.73 -0.16 -1.09 16 19 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 20 C -0.11 -0.96 5.92 -26.71 -0.16 -1.12 16 21 C -0.14 -1.54 5.22 -26.71 -0.14 -1.68 16 22 C 0.64 11.77 8.31 53.71 0.45 12.22 16 23 O -0.54 -11.16 15.05 -19.11 -0.29 -11.45 16 24 O -0.31 -6.20 9.89 -37.83 -0.37 -6.57 16 25 H 0.03 0.81 7.33 -51.93 -0.38 0.43 16 26 H 0.04 1.12 7.36 -51.93 -0.38 0.73 16 27 H 0.01 0.14 7.31 -51.93 -0.38 -0.24 16 28 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.07 1.28 8.04 -51.93 -0.42 0.86 16 31 H 0.09 0.90 7.73 -51.93 -0.40 0.50 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.08 1.14 6.80 -51.93 -0.35 0.79 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.17 6.81 -51.93 -0.35 0.81 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -32.31 336.96 -8.67 -40.98 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -7.28 Total: -3.45 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -0.36 Total: 9.22 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.42 Total: -50.35 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.66 Total: -18.02 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.31 -8.67 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827863488.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.655 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds