Wall clock time and date at job start Tue Mar 31 2020 06:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47159 * 2 1 4 4 C 1.52999 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47786 * 305.00219 * 4 3 2 6 6 C 1.52996 * 109.47252 * 65.00643 * 4 3 2 7 7 C 1.53007 * 109.47211 * 186.38552 * 6 4 3 8 8 C 1.52994 * 109.47223 * 64.23007 * 7 6 4 9 9 C 1.53004 * 109.46918 * 184.23172 * 7 6 4 10 10 C 1.50707 * 109.46827 * 185.00345 * 4 3 2 11 11 O 1.20827 * 119.99889 * 348.27228 * 10 4 3 12 12 O 1.34230 * 119.99843 * 168.27850 * 10 4 3 13 13 C 1.45197 * 116.99702 * 185.17417 * 12 10 4 14 14 C 1.53005 * 109.47106 * 175.25994 * 13 12 10 15 15 C 1.50702 * 115.54918 * 305.53998 * 14 13 12 16 16 H 1.08000 * 119.99370 * 143.81188 * 15 14 13 17 17 C 1.37874 * 120.00053 * 323.80689 * 15 14 13 18 18 N 1.31520 * 120.00057 * 2.87962 * 17 15 14 19 19 Si 1.86798 * 120.00023 * 182.87401 * 17 15 14 20 20 H 1.48500 * 109.46681 * 65.00487 * 19 17 15 21 21 H 1.48499 * 109.46975 * 185.00240 * 19 17 15 22 22 H 1.48498 * 109.47106 * 305.00457 * 19 17 15 23 23 C 1.53001 * 117.49921 * 159.86771 * 14 13 12 24 24 C 1.52996 * 117.49557 * 91.20960 * 14 13 12 25 25 H 1.08994 * 109.47237 * 59.99110 * 1 2 3 26 26 H 1.08992 * 109.46757 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46749 * 299.99946 * 1 2 3 28 28 H 1.08997 * 109.47792 * 120.00382 * 2 1 3 29 29 H 1.09002 * 109.47408 * 240.00371 * 2 1 3 30 30 H 1.08993 * 109.47292 * 300.00352 * 3 2 1 31 31 H 1.08999 * 109.46867 * 60.00380 * 3 2 1 32 32 H 1.09000 * 109.46790 * 306.38167 * 6 4 3 33 33 H 1.08997 * 109.47815 * 66.38197 * 6 4 3 34 34 H 1.09003 * 109.46634 * 304.22842 * 7 6 4 35 35 H 1.08993 * 109.47384 * 63.98315 * 8 7 6 36 36 H 1.09001 * 109.46764 * 183.98605 * 8 7 6 37 37 H 1.08999 * 109.47242 * 303.97701 * 8 7 6 38 38 H 1.08999 * 109.47387 * 55.10845 * 9 7 6 39 39 H 1.09004 * 109.46962 * 175.10642 * 9 7 6 40 40 H 1.09000 * 109.46905 * 295.10817 * 9 7 6 41 41 H 1.09003 * 109.47652 * 295.25911 * 13 12 10 42 42 H 1.09001 * 109.47555 * 55.26336 * 13 12 10 43 43 H 0.97001 * 120.00048 * 185.00596 * 18 17 15 44 44 H 1.09006 * 117.49695 * 0.02562 * 23 14 13 45 45 H 1.08997 * 117.49730 * 145.01776 * 23 14 13 46 46 H 1.09001 * 117.49558 * 214.97656 * 24 14 13 47 47 H 1.08997 * 117.50103 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9338 0.8528 0.8409 6 6 4.0795 0.8332 -1.3083 7 6 5.6011 0.6864 -1.2439 8 6 5.9713 -0.3094 -0.1429 9 6 6.1216 0.1761 -2.5891 10 6 4.0724 2.8579 0.1233 11 8 3.3078 3.7841 -0.0087 12 8 5.3694 3.0896 0.3801 13 6 5.7612 4.4702 0.6008 14 6 7.2393 4.5245 0.9924 15 6 7.6317 3.6692 2.1695 16 1 8.5925 3.1762 2.1823 17 6 6.7641 3.5163 3.2301 18 7 5.5719 4.0702 3.1897 19 14 7.2819 2.5222 4.7244 20 1 8.4134 3.2028 5.4038 21 1 6.1373 2.4076 5.6636 22 1 7.7065 1.1659 4.2938 23 6 7.9692 5.8572 0.8129 24 6 8.2626 4.6900 -0.1329 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.6257 -0.1472 -1.4533 33 1 3.8122 1.4839 -2.1409 34 1 6.0505 1.6548 -1.0241 35 1 5.5815 -1.2947 -0.3981 36 1 7.0560 -0.3607 -0.0493 37 1 5.5401 0.0181 0.8031 38 1 5.7839 0.8400 -3.3849 39 1 7.2113 0.1542 -2.5724 40 1 5.7406 -0.8292 -2.7684 41 1 5.6065 5.0425 -0.3139 42 1 5.1572 4.8957 1.4022 43 1 4.9894 4.0245 3.9639 44 1 7.3962 6.6954 0.4162 45 1 8.7334 6.1152 1.5461 46 1 9.2198 4.1806 -0.0216 47 1 7.8829 4.7597 -1.1523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835188168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:56 Heat of formation + Delta-G solvation = -99.018181 kcal Electronic energy + Delta-G solvation = -24087.296595 eV Core-core repulsion = 20848.875978 eV Total energy + Delta-G solvation = -3238.420617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.77041 -37.24695 -36.41256 -35.12493 -34.38763 -32.15994 -30.93911 -26.88827 -26.64121 -26.09254 -25.39854 -23.67423 -21.29453 -20.99566 -20.15330 -19.13833 -18.91757 -16.67402 -16.57462 -15.78117 -15.14975 -15.00166 -14.63314 -14.29938 -14.15529 -13.75191 -13.50892 -13.06486 -12.95478 -12.65508 -12.34983 -11.99902 -11.85783 -11.75256 -11.65609 -11.40849 -11.28150 -11.11548 -11.03080 -10.86447 -10.73659 -10.64423 -10.51643 -10.31856 -10.26226 -10.12729 -10.03789 -9.83453 -9.30022 -9.22774 -8.94639 -8.74070 -8.20732 -5.98542 -4.10617 3.16259 3.27688 3.33400 3.35589 3.71264 4.36024 4.82355 4.95049 4.99966 5.12376 5.17689 5.24788 5.30209 5.46015 5.54157 5.58497 5.62736 5.77138 5.84679 5.89606 5.93435 5.95040 6.04856 6.06987 6.08092 6.13016 6.17045 6.21833 6.26045 6.28925 6.38628 6.48265 6.52883 6.55290 6.65096 6.65512 6.76116 6.84027 6.91616 7.02610 7.25242 7.50037 7.73818 7.93177 8.34589 8.80750 8.91527 9.51423 10.97579 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.006207 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.856962 B = 4510.146529 C = 4948.285153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.103 4.103 4 C -0.085 4.085 5 H 0.104 0.896 6 C -0.102 4.102 7 C -0.110 4.110 8 C -0.141 4.141 9 C -0.142 4.142 10 C 0.464 3.536 11 O -0.532 6.532 12 O -0.316 6.316 13 C 0.116 3.884 14 C 0.048 3.952 15 C -0.475 4.475 16 H 0.060 0.940 17 C 0.074 3.926 18 N -0.884 5.884 19 Si 0.895 3.105 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.197 4.197 24 C -0.208 4.208 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.017 0.983 42 H 0.117 0.883 43 H 0.262 0.738 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.855 -8.492 -7.512 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.140 4.140 4 C -0.105 4.105 5 H 0.122 0.878 6 C -0.140 4.140 7 C -0.128 4.128 8 C -0.198 4.198 9 C -0.200 4.200 10 C 0.308 3.692 11 O -0.423 6.423 12 O -0.230 6.230 13 C 0.043 3.957 14 C 0.048 3.952 15 C -0.512 4.512 16 H 0.078 0.922 17 C -0.128 4.128 18 N -0.522 5.522 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.235 4.235 24 C -0.246 4.246 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.035 0.965 42 H 0.134 0.866 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.096 0.904 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.229 -8.235 -7.457 12.278 hybrid contribution 0.294 -0.185 0.850 0.918 sum -4.935 -8.420 -6.607 11.786 Atomic orbital electron populations 1.21755 0.95956 1.01211 1.01916 1.21595 0.95727 0.96741 1.02159 1.21459 0.92552 0.96571 1.03456 1.21164 0.96251 0.91874 1.01172 0.87759 1.21641 0.96217 1.00771 0.95346 1.21321 0.94715 1.01762 0.95021 1.21798 1.01567 0.97594 0.98885 1.21806 1.00948 1.00277 0.96938 1.23296 0.81703 0.91532 0.72711 1.90551 1.57521 1.46355 1.47917 1.86455 1.24693 1.33476 1.78368 1.22852 0.96819 0.77585 0.98463 1.18923 0.87667 0.94684 0.93944 1.20403 1.01719 1.28250 1.00875 0.92160 1.24927 0.94217 0.95156 0.98534 1.69779 1.07774 1.45166 1.29478 0.86610 0.78027 0.80761 0.82393 1.20348 1.21257 1.19957 1.22981 1.05060 0.92513 1.02948 1.22932 1.02339 1.04636 0.94667 0.92801 0.92988 0.92719 0.91909 0.91700 0.91258 0.91237 0.90765 0.91951 0.88532 0.93790 0.92683 0.92045 0.93207 0.92745 0.93328 0.96458 0.86581 0.92791 0.91523 0.89884 0.90421 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 37.16 0.37 -1.15 16 2 C -0.12 -1.41 5.70 -26.73 -0.15 -1.56 16 3 C -0.10 -1.49 3.99 -26.73 -0.11 -1.59 16 4 C -0.09 -1.39 2.18 -91.77 -0.20 -1.59 16 5 H 0.10 1.71 6.18 -51.93 -0.32 1.39 16 6 C -0.10 -1.42 4.03 -26.73 -0.11 -1.52 16 7 C -0.11 -1.63 2.73 -90.62 -0.25 -1.87 16 8 C -0.14 -2.05 9.03 37.15 0.34 -1.72 16 9 C -0.14 -1.77 9.19 37.16 0.34 -1.42 16 10 C 0.46 9.90 6.97 36.01 0.25 10.15 16 11 O -0.53 -12.60 15.79 -18.75 -0.30 -12.90 16 12 O -0.32 -7.38 7.65 -39.26 -0.30 -7.68 16 13 C 0.12 2.88 4.39 37.16 0.16 3.04 16 14 C 0.05 1.19 2.19 -155.66 -0.34 0.85 16 15 C -0.48 -12.63 8.79 -34.44 -0.30 -12.94 16 16 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 17 C 0.07 1.96 5.37 -17.82 -0.10 1.86 16 18 N -0.88 -24.19 10.30 55.43 0.57 -23.62 16 19 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.20 -4.38 9.96 -26.69 -0.27 -4.65 16 24 C -0.21 -4.50 9.92 -26.70 -0.26 -4.76 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 30 H 0.07 1.02 8.11 -51.93 -0.42 0.59 16 31 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 32 H 0.07 0.86 6.29 -51.93 -0.33 0.53 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.76 5.75 -51.93 -0.30 1.46 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.98 6.24 -51.93 -0.32 0.66 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.41 8.09 -51.93 -0.42 -0.01 16 42 H 0.12 3.20 5.86 -51.93 -0.30 2.90 16 43 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 46 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 47 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -28.30 370.13 -8.73 -37.03 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.64 Total: 4.79 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -0.62 Total: -18.88 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.57 Total: -23.62 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.60 Total: -20.57 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.30 -8.73 -37.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.992 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds