Wall clock time and date at job start Tue Mar 31 2020 06:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47159 * 2 1 4 4 C 1.52999 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47786 * 305.00219 * 4 3 2 6 6 C 1.52996 * 109.47252 * 65.00643 * 4 3 2 7 7 C 1.53007 * 109.47211 * 186.38552 * 6 4 3 8 8 C 1.52994 * 109.47223 * 64.23007 * 7 6 4 9 9 C 1.53004 * 109.46918 * 184.23172 * 7 6 4 10 10 C 1.50707 * 109.46827 * 185.00345 * 4 3 2 11 11 O 1.20827 * 119.99889 * 348.27228 * 10 4 3 12 12 O 1.34230 * 119.99843 * 168.27850 * 10 4 3 13 13 C 1.45197 * 116.99702 * 185.17417 * 12 10 4 14 14 C 1.53005 * 109.47106 * 175.25994 * 13 12 10 15 15 C 1.50702 * 115.54918 * 305.53998 * 14 13 12 16 16 H 1.08000 * 119.99370 * 143.81188 * 15 14 13 17 17 C 1.37874 * 120.00053 * 323.80689 * 15 14 13 18 18 N 1.31520 * 120.00057 * 2.87962 * 17 15 14 19 19 Si 1.86798 * 120.00023 * 182.87401 * 17 15 14 20 20 H 1.48500 * 109.46681 * 65.00487 * 19 17 15 21 21 H 1.48499 * 109.46975 * 185.00240 * 19 17 15 22 22 H 1.48498 * 109.47106 * 305.00457 * 19 17 15 23 23 C 1.53001 * 117.49921 * 159.86771 * 14 13 12 24 24 C 1.52996 * 117.49557 * 91.20960 * 14 13 12 25 25 H 1.08994 * 109.47237 * 59.99110 * 1 2 3 26 26 H 1.08992 * 109.46757 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46749 * 299.99946 * 1 2 3 28 28 H 1.08997 * 109.47792 * 120.00382 * 2 1 3 29 29 H 1.09002 * 109.47408 * 240.00371 * 2 1 3 30 30 H 1.08993 * 109.47292 * 300.00352 * 3 2 1 31 31 H 1.08999 * 109.46867 * 60.00380 * 3 2 1 32 32 H 1.09000 * 109.46790 * 306.38167 * 6 4 3 33 33 H 1.08997 * 109.47815 * 66.38197 * 6 4 3 34 34 H 1.09003 * 109.46634 * 304.22842 * 7 6 4 35 35 H 1.08993 * 109.47384 * 63.98315 * 8 7 6 36 36 H 1.09001 * 109.46764 * 183.98605 * 8 7 6 37 37 H 1.08999 * 109.47242 * 303.97701 * 8 7 6 38 38 H 1.08999 * 109.47387 * 55.10845 * 9 7 6 39 39 H 1.09004 * 109.46962 * 175.10642 * 9 7 6 40 40 H 1.09000 * 109.46905 * 295.10817 * 9 7 6 41 41 H 1.09003 * 109.47652 * 295.25911 * 13 12 10 42 42 H 1.09001 * 109.47555 * 55.26336 * 13 12 10 43 43 H 0.97001 * 120.00048 * 185.00596 * 18 17 15 44 44 H 1.09006 * 117.49695 * 0.02562 * 23 14 13 45 45 H 1.08997 * 117.49730 * 145.01776 * 23 14 13 46 46 H 1.09001 * 117.49558 * 214.97656 * 24 14 13 47 47 H 1.08997 * 117.50103 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9338 0.8528 0.8409 6 6 4.0795 0.8332 -1.3083 7 6 5.6011 0.6864 -1.2439 8 6 5.9713 -0.3094 -0.1429 9 6 6.1216 0.1761 -2.5891 10 6 4.0724 2.8579 0.1233 11 8 3.3078 3.7841 -0.0087 12 8 5.3694 3.0896 0.3801 13 6 5.7612 4.4702 0.6008 14 6 7.2393 4.5245 0.9924 15 6 7.6317 3.6692 2.1695 16 1 8.5925 3.1762 2.1823 17 6 6.7641 3.5163 3.2301 18 7 5.5719 4.0702 3.1897 19 14 7.2819 2.5222 4.7244 20 1 8.4134 3.2028 5.4038 21 1 6.1373 2.4076 5.6636 22 1 7.7065 1.1659 4.2938 23 6 7.9692 5.8572 0.8129 24 6 8.2626 4.6900 -0.1329 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.6257 -0.1472 -1.4533 33 1 3.8122 1.4839 -2.1409 34 1 6.0505 1.6548 -1.0241 35 1 5.5815 -1.2947 -0.3981 36 1 7.0560 -0.3607 -0.0493 37 1 5.5401 0.0181 0.8031 38 1 5.7839 0.8400 -3.3849 39 1 7.2113 0.1542 -2.5724 40 1 5.7406 -0.8292 -2.7684 41 1 5.6065 5.0425 -0.3139 42 1 5.1572 4.8957 1.4022 43 1 4.9894 4.0245 3.9639 44 1 7.3962 6.6954 0.4162 45 1 8.7334 6.1152 1.5461 46 1 9.2198 4.1806 -0.0216 47 1 7.8829 4.7597 -1.1523 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835188168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:55 Heat of formation + Delta-G solvation = -110.527630 kcal Electronic energy + Delta-G solvation = -24087.795682 eV Core-core repulsion = 20848.875978 eV Total energy + Delta-G solvation = -3238.919704 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.43410 -38.83825 -37.96438 -36.79476 -35.58386 -34.17887 -32.05701 -28.47163 -27.93184 -27.43336 -27.17068 -24.99874 -23.03171 -22.18852 -21.40664 -21.06449 -20.32873 -18.48349 -18.31729 -17.42901 -16.85508 -16.57122 -16.06611 -15.73188 -15.43535 -15.23125 -14.91082 -14.46297 -14.10441 -13.99952 -13.79085 -13.53565 -13.32371 -12.98155 -12.96581 -12.87570 -12.77143 -12.67024 -12.41849 -12.35625 -12.17282 -12.13663 -11.87522 -11.72805 -11.64994 -11.42230 -11.33574 -11.20999 -11.08904 -11.00755 -10.84346 -10.66901 -10.13678 -7.99873 -6.18257 1.42666 1.43094 1.46240 1.50942 2.09773 2.42461 3.05349 3.55969 3.64675 3.82617 3.88388 4.14050 4.19933 4.22313 4.24386 4.32327 4.39597 4.42154 4.55032 4.60638 4.71391 4.79581 4.81574 4.85252 4.89911 4.92287 4.94395 4.94759 5.02433 5.07316 5.09763 5.15273 5.18026 5.20536 5.28665 5.36646 5.45160 5.45631 5.50193 5.51226 5.59980 5.68320 5.85312 5.98196 6.33979 6.79910 7.11117 7.45635 8.93766 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.006207 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.856962 B = 4510.146529 C = 4948.285153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.098 4.098 4 C -0.079 4.079 5 H 0.104 0.896 6 C -0.094 4.094 7 C -0.112 4.112 8 C -0.139 4.139 9 C -0.137 4.137 10 C 0.454 3.546 11 O -0.563 6.563 12 O -0.322 6.322 13 C 0.124 3.876 14 C 0.011 3.989 15 C -0.488 4.488 16 H 0.055 0.945 17 C 0.032 3.968 18 N -0.907 5.907 19 Si 0.950 3.050 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.268 1.268 23 C -0.190 4.190 24 C -0.185 4.185 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.018 0.982 42 H 0.084 0.916 43 H 0.257 0.743 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 -10.723 -8.599 14.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.136 4.136 4 C -0.098 4.098 5 H 0.121 0.879 6 C -0.131 4.131 7 C -0.130 4.130 8 C -0.196 4.196 9 C -0.194 4.194 10 C 0.300 3.700 11 O -0.456 6.456 12 O -0.236 6.236 13 C 0.051 3.949 14 C 0.010 3.990 15 C -0.526 4.526 16 H 0.073 0.927 17 C -0.168 4.168 18 N -0.546 5.546 19 Si 0.776 3.224 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.193 1.193 23 C -0.228 4.228 24 C -0.223 4.223 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.167 -10.472 -8.551 14.473 hybrid contribution 0.286 0.553 1.158 1.315 sum -4.881 -9.919 -7.393 13.299 Atomic orbital electron populations 1.21758 0.94963 1.02397 1.01698 1.21575 0.96554 0.94119 1.03273 1.21456 0.91055 0.98916 1.02137 1.21334 0.97375 0.88366 1.02741 0.87858 1.21653 0.95688 1.02245 0.93482 1.21275 0.95153 0.99958 0.96609 1.21773 1.00965 0.99034 0.97805 1.21752 1.00813 1.01556 0.95273 1.24429 0.80753 0.93476 0.71338 1.90521 1.57899 1.47866 1.49317 1.86501 1.26074 1.32495 1.78554 1.22556 0.96701 0.78500 0.97177 1.19043 0.88188 0.96465 0.95261 1.20615 1.01541 1.28613 1.01809 0.92650 1.25583 0.94210 0.96105 1.00903 1.69960 1.08508 1.46392 1.29692 0.85734 0.77623 0.79673 0.79413 1.19803 1.21317 1.19325 1.22994 1.04450 0.92287 1.03063 1.22928 1.01420 1.03298 0.94613 0.92521 0.91056 0.93567 0.91582 0.89682 0.91597 0.93652 0.87174 0.91988 0.92557 0.90707 0.93610 0.94197 0.92871 0.93011 0.90911 0.96359 0.89787 0.93328 0.90335 0.89782 0.89655 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.91 71.98 0.71 -1.98 16 2 C -0.12 -2.37 5.70 30.60 0.17 -2.19 16 3 C -0.10 -2.78 3.99 30.60 0.12 -2.66 16 4 C -0.08 -2.56 2.18 -11.54 -0.03 -2.59 16 5 H 0.10 3.39 6.18 -2.39 -0.01 3.37 16 6 C -0.09 -2.40 4.03 30.60 0.12 -2.28 16 7 C -0.11 -3.15 2.73 -10.79 -0.03 -3.18 16 8 C -0.14 -3.82 9.03 71.98 0.65 -3.17 16 9 C -0.14 -3.04 9.19 71.98 0.66 -2.38 16 10 C 0.45 19.99 6.97 71.24 0.50 20.49 16 11 O -0.56 -27.75 15.79 21.96 0.35 -27.40 16 12 O -0.32 -15.56 7.65 -51.42 -0.39 -15.96 16 13 C 0.12 6.38 4.39 71.98 0.32 6.70 16 14 C 0.01 0.54 2.19 -52.93 -0.12 0.43 16 15 C -0.49 -26.30 8.79 25.60 0.22 -26.08 16 16 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 17 C 0.03 1.70 5.37 84.65 0.45 2.15 16 18 N -0.91 -51.16 10.30 21.45 0.22 -50.94 16 19 Si 0.95 42.85 29.54 68.60 2.03 44.88 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 23 C -0.19 -8.38 9.96 30.62 0.30 -8.07 16 24 C -0.19 -7.84 9.92 30.62 0.30 -7.54 16 25 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.38 6.43 -2.39 -0.02 1.37 16 30 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 31 H 0.04 1.48 8.12 -2.39 -0.02 1.46 16 32 H 0.11 2.08 6.29 -2.39 -0.02 2.06 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 2.07 5.75 -2.39 -0.01 2.05 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 37 H 0.04 1.25 6.24 -2.39 -0.01 1.24 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.02 0.90 8.09 -2.39 -0.02 0.88 16 42 H 0.08 4.87 5.86 -2.39 -0.01 4.85 16 43 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 44 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 45 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 46 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 47 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -62.69 370.13 7.48 -55.21 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.91 Total: 26.56 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 4.38 Total: -32.35 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.22 Total: -50.94 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.05 Total: -43.36 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -62.69 7.48 -55.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835188168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.322 kcal (2) G-P(sol) polarization free energy of solvation -62.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds