Wall clock time and date at job start Tue Mar 31 2020 06:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.05107 * 2 1 4 4 C 1.54265 * 110.02911 * 121.41774 * 2 1 3 5 5 C 1.54891 * 104.19599 * 142.89853 * 4 2 1 6 6 C 1.55023 * 102.75206 * 322.04552 * 5 4 2 7 7 C 1.53869 * 110.03339 * 238.58509 * 2 1 3 8 8 C 1.53005 * 110.03487 * 0.04585 * 7 2 1 9 9 C 1.50696 * 110.03543 * 121.42844 * 7 2 1 10 10 O 1.20827 * 119.99907 * 359.31252 * 9 7 2 11 11 O 1.34226 * 120.00369 * 179.30751 * 9 7 2 12 12 C 1.45198 * 117.00235 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47301 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46927 * 60.00199 * 13 12 11 15 15 C 1.52995 * 109.47137 * 300.00214 * 13 12 11 16 16 C 1.53001 * 109.47355 * 180.02562 * 13 12 11 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 13 12 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 13 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.09003 * 109.47244 * 181.41364 * 1 2 3 26 26 H 1.08999 * 109.47373 * 301.41870 * 1 2 3 27 27 H 1.08998 * 109.47097 * 61.41522 * 1 2 3 28 28 H 1.09005 * 110.48652 * 261.57239 * 4 2 1 29 29 H 1.08997 * 110.48861 * 24.08166 * 4 2 1 30 30 H 1.09004 * 110.75915 * 80.36566 * 5 4 2 31 31 H 1.08993 * 110.75915 * 203.55982 * 5 4 2 32 32 H 1.09001 * 110.49943 * 279.29717 * 6 5 4 33 33 H 1.08994 * 110.52302 * 156.61443 * 6 5 4 34 34 H 1.08996 * 109.47276 * 180.68966 * 8 7 2 35 35 H 1.08995 * 109.46920 * 300.69555 * 8 7 2 36 36 H 1.09009 * 109.46739 * 60.68796 * 8 7 2 37 37 H 1.09002 * 109.46903 * 60.00364 * 12 11 9 38 38 H 1.08992 * 109.47569 * 300.00326 * 12 11 9 39 39 H 1.08998 * 109.46768 * 180.02562 * 14 13 12 40 40 H 1.08995 * 109.47095 * 300.00011 * 14 13 12 41 41 H 1.09000 * 109.47156 * 60.00290 * 14 13 12 42 42 H 1.09002 * 109.47384 * 299.99783 * 15 13 12 43 43 H 1.08997 * 109.47386 * 60.00317 * 15 13 12 44 44 H 1.09007 * 109.47390 * 179.97438 * 15 13 12 45 45 H 1.09007 * 109.46922 * 59.99890 * 16 13 12 46 46 H 1.09003 * 109.46836 * 300.00646 * 16 13 12 47 47 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7555 1.2369 5 6 3.3137 -1.5007 0.7192 6 6 2.8872 -1.9413 -0.7046 7 6 2.0571 -0.7535 -1.2337 8 6 0.8862 -1.2659 -2.0748 9 6 2.9276 0.1565 -2.0615 10 8 3.1053 1.3007 -1.7165 11 8 3.5055 -0.3041 -3.1820 12 6 4.3310 0.6279 -3.9290 13 6 4.9007 -0.0722 -5.1644 14 6 3.7519 -0.5589 -6.0499 15 6 5.7493 -1.2678 -4.7271 16 6 5.7711 0.9097 -5.9512 17 6 6.3317 0.2202 -7.1683 18 1 6.0909 -0.8147 -7.3616 19 6 7.1521 0.9107 -8.0352 20 7 7.4449 2.1711 -7.8001 21 14 7.8475 0.0558 -9.5435 22 1 9.1506 -0.5689 -9.2017 23 1 6.9000 -0.9931 -9.9990 24 1 8.0447 1.0499 -10.6289 25 1 -0.3634 -1.0274 0.0254 26 1 -0.3634 0.5357 0.8770 27 1 -0.3633 0.4917 -0.9024 28 1 2.3297 -0.0536 2.0255 29 1 1.3133 -1.4643 1.5980 30 1 4.1710 -0.8290 0.6752 31 1 3.5344 -2.3660 1.3441 32 1 2.2765 -2.8430 -0.6583 33 1 3.7630 -2.1044 -1.3325 34 1 1.2696 -1.8082 -2.9391 35 1 0.2699 -1.9324 -1.4716 36 1 0.2850 -0.4218 -2.4129 37 1 5.1498 0.9742 -3.2983 38 1 3.7267 1.4799 -4.2402 39 1 4.1577 -1.0581 -6.9298 40 1 3.1321 -1.2585 -5.4892 41 1 3.1473 0.2929 -6.3615 42 1 6.5678 -0.9212 -4.0962 43 1 5.1296 -1.9676 -4.1664 44 1 6.1548 -1.7670 -5.6072 45 1 6.5896 1.2560 -5.3201 46 1 5.1669 1.7618 -6.2627 47 1 8.0223 2.6567 -8.4098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835386387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:23 Heat of formation + Delta-G solvation = -127.336251 kcal Electronic energy + Delta-G solvation = -23550.224530 eV Core-core repulsion = 20310.575949 eV Total energy + Delta-G solvation = -3239.648580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.198 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.89297 -38.62332 -36.89899 -35.34729 -32.35883 -32.05062 -31.23002 -27.32376 -26.50230 -26.40280 -25.64395 -25.37291 -23.20007 -21.92516 -20.84460 -18.67558 -18.10629 -17.09201 -16.70625 -16.20131 -16.15573 -15.02957 -14.56287 -14.54386 -14.14631 -13.81050 -13.61547 -13.56781 -13.25224 -12.87230 -12.42735 -12.26945 -12.08795 -12.05753 -11.84525 -11.44892 -11.25884 -11.17502 -10.96835 -10.94791 -10.92484 -10.84448 -10.82862 -10.59560 -10.53126 -10.37275 -10.24610 -10.22487 -10.01198 -9.72118 -9.19208 -8.93928 -8.36572 -6.00741 -4.01869 2.43303 2.94394 3.31430 3.38177 3.40749 4.21137 4.33418 4.44634 4.57896 4.95428 4.99567 5.10513 5.13745 5.25018 5.31060 5.32795 5.34952 5.52275 5.53304 5.55664 5.61337 5.69261 5.71856 5.76381 5.82989 5.85249 5.87891 6.02516 6.06103 6.10013 6.16931 6.20758 6.29758 6.39631 6.52124 6.66657 6.71662 6.87964 7.11496 7.12554 7.14721 7.61230 7.73142 7.97496 8.03944 8.40036 9.02528 9.61184 11.10956 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036031 B = 0.003447 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.927864 B = 8119.950908 C = 8156.466655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.097 0.903 4 C -0.117 4.117 5 C -0.129 4.129 6 C -0.112 4.112 7 C -0.053 4.053 8 C -0.140 4.140 9 C 0.466 3.534 10 O -0.513 6.513 11 O -0.346 6.346 12 C 0.078 3.922 13 C -0.058 4.058 14 C -0.125 4.125 15 C -0.125 4.125 16 C 0.035 3.965 17 C -0.509 4.509 18 H 0.061 0.939 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.274 1.274 24 H -0.287 1.287 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.970 -8.563 16.033 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.115 0.885 4 C -0.154 4.154 5 C -0.166 4.166 6 C -0.149 4.149 7 C -0.055 4.055 8 C -0.197 4.197 9 C 0.309 3.691 10 O -0.402 6.402 11 O -0.262 6.262 12 C 0.005 3.995 13 C -0.058 4.058 14 C -0.182 4.182 15 C -0.182 4.182 16 C -0.002 4.002 17 C -0.548 4.548 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.199 1.199 24 H -0.213 1.213 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.795 -8.057 16.011 22.022 hybrid contribution 0.605 -0.013 -0.928 1.108 sum -12.190 -8.070 15.083 21.005 Atomic orbital electron populations 1.21976 0.94545 1.01798 1.01823 1.21904 0.95995 1.01138 0.92122 0.88503 1.22429 0.97193 0.98857 0.96963 1.22559 0.98032 1.00145 0.95907 1.22500 0.99828 0.96160 0.96432 1.21150 0.94845 0.94950 0.94518 1.21984 0.96337 1.01575 0.99806 1.23475 0.78290 0.87311 0.80028 1.90605 1.59580 1.19965 1.70051 1.86477 1.59266 1.45326 1.35121 1.23488 0.92409 0.91012 0.92594 1.20797 0.96038 0.97371 0.91596 1.21706 0.96871 1.00091 0.99567 1.21707 0.98430 0.97152 1.00944 1.19125 0.93620 0.93240 0.94254 1.21155 1.28702 0.97663 1.07232 0.92075 1.25019 0.96575 0.94846 0.98088 1.69970 1.37034 1.08913 1.37590 0.86616 0.79447 0.79294 0.82785 1.20727 1.19855 1.21323 0.92227 0.92665 0.92294 0.91489 0.91351 0.91396 0.91071 0.90103 0.90298 0.91235 0.90929 0.91891 0.91791 0.91779 0.91601 0.94208 0.93828 0.93828 0.94217 0.91604 0.96396 0.96391 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 7.89 37.16 0.29 -0.92 16 2 C -0.09 -0.98 3.10 -89.50 -0.28 -1.25 16 3 H 0.10 1.26 6.40 -51.93 -0.33 0.93 16 4 C -0.12 -1.02 6.36 -25.07 -0.16 -1.18 16 5 C -0.13 -1.20 6.91 -24.67 -0.17 -1.37 16 6 C -0.11 -1.12 5.90 -25.00 -0.15 -1.27 16 7 C -0.05 -0.61 0.87 -154.54 -0.14 -0.75 16 8 C -0.14 -1.37 7.13 37.16 0.27 -1.10 16 9 C 0.47 7.31 6.50 36.00 0.23 7.55 16 10 O -0.51 -9.47 14.96 -18.75 -0.28 -9.75 16 11 O -0.35 -5.81 8.53 -39.25 -0.33 -6.14 16 12 C 0.08 1.48 4.32 37.16 0.16 1.64 16 13 C -0.06 -1.18 0.61 -154.51 -0.09 -1.27 16 14 C -0.13 -2.39 8.08 37.16 0.30 -2.09 16 15 C -0.13 -2.38 8.08 37.15 0.30 -2.08 16 16 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 17 C -0.51 -13.77 7.65 -34.44 -0.26 -14.04 16 18 H 0.06 1.59 5.68 -52.49 -0.30 1.30 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 21 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H 0.06 0.42 6.70 -51.93 -0.35 0.07 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.52 6.76 -51.93 -0.35 0.17 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.50 7.83 -51.93 -0.41 0.09 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.66 7.84 -51.93 -0.41 0.25 16 33 H 0.08 0.89 7.63 -51.93 -0.40 0.49 16 34 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.07 0.55 6.68 -51.93 -0.35 0.20 16 36 H 0.06 0.62 6.78 -51.92 -0.35 0.27 16 37 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 38 H 0.06 1.25 8.13 -51.93 -0.42 0.83 16 39 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 40 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 44 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 45 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 359.27 15.07 5.41 5.41 Total: -1.00 -30.12 359.27 -7.90 -38.02 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -8.51 Total: -2.09 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 0.09 Total: -15.90 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.62 Total: -15.89 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.12 -7.90 -38.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835386387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.315 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds