Wall clock time and date at job start Tue Mar 31 2020 05:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36929 * 120.00346 * 2 1 4 4 H 1.08005 * 120.00141 * 202.06413 * 3 2 1 5 5 C 1.38816 * 120.00080 * 22.05951 * 3 2 1 6 6 N 1.31617 * 119.99862 * 12.43302 * 5 3 2 7 7 Si 1.86801 * 120.00002 * 192.42726 * 5 3 2 8 8 H 1.48500 * 109.47239 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.46842 * 120.00495 * 7 5 3 10 10 H 1.48502 * 109.47069 * 239.99907 * 7 5 3 11 11 C 1.46501 * 119.99623 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.49656 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.49518 * 60.00166 * 11 2 1 14 14 C 1.53039 * 109.53630 * 178.65149 * 13 11 2 15 15 C 1.53199 * 109.31539 * 61.36150 * 14 13 11 16 16 N 1.46916 * 108.77396 * 305.36853 * 15 14 13 17 17 C 1.34777 * 120.62979 * 233.58470 * 16 15 14 18 18 O 1.21287 * 120.00319 * 179.97438 * 17 16 15 19 19 C 1.50699 * 119.99834 * 0.27227 * 17 16 15 20 20 H 1.09001 * 110.75409 * 59.02718 * 19 17 16 21 21 C 1.55307 * 110.84767 * 182.49913 * 19 17 16 22 22 C 1.55211 * 100.82804 * 152.18157 * 21 19 17 23 23 O 1.43647 * 105.25629 * 323.81625 * 22 21 19 24 24 C 1.43232 * 109.97320 * 24.28476 * 23 22 21 25 25 C 1.46924 * 118.74199 * 53.85842 * 16 15 14 26 26 H 1.08998 * 109.46727 * 274.30605 * 1 2 3 27 27 H 1.08998 * 109.46693 * 34.30320 * 1 2 3 28 28 H 1.08997 * 109.47411 * 154.30448 * 1 2 3 29 29 H 0.97000 * 120.00125 * 179.97438 * 6 5 3 30 30 H 1.08992 * 109.46306 * 58.63144 * 13 11 2 31 31 H 1.09005 * 109.46145 * 298.66545 * 13 11 2 32 32 H 1.09001 * 109.50136 * 301.41043 * 14 13 11 33 33 H 1.09000 * 109.50157 * 181.31685 * 14 13 11 34 34 H 1.09003 * 109.58445 * 185.57542 * 15 14 13 35 35 H 1.08999 * 109.57914 * 65.15355 * 15 14 13 36 36 H 1.09002 * 111.12367 * 270.24297 * 21 19 17 37 37 H 1.08999 * 111.12909 * 34.40182 * 21 19 17 38 38 H 1.08997 * 110.36975 * 204.79717 * 22 21 19 39 39 H 1.09001 * 110.20991 * 82.74832 * 22 21 19 40 40 H 1.09000 * 109.83460 * 238.77685 * 24 23 22 41 41 H 1.09005 * 109.83276 * 117.80109 * 24 23 22 42 42 H 1.08994 * 109.58631 * 65.92468 * 25 16 15 43 43 H 1.09000 * 109.58671 * 186.35483 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1705 1.2200 -0.3514 5 6 1.5320 2.3440 0.4515 6 7 0.3902 2.2701 1.1020 7 14 2.3213 4.0074 0.1360 8 1 3.5911 3.8192 -0.6106 9 1 1.3970 4.8499 -0.6648 10 1 2.6027 4.6756 1.4319 11 6 2.1975 -1.2688 0.0006 12 1 3.2692 -1.0702 0.0009 13 6 1.8281 -2.0723 -1.2485 14 6 2.6180 -3.3830 -1.2659 15 6 2.2508 -4.2124 -0.0313 16 7 2.4665 -3.3938 1.1694 17 6 3.2374 -3.8450 2.1787 18 8 3.4082 -3.1595 3.1646 19 6 3.8927 -5.1984 2.0793 20 1 4.5468 -5.2478 1.2087 21 6 4.6760 -5.5300 3.3787 22 6 4.6087 -7.0806 3.3720 23 8 3.3116 -7.4004 2.8441 24 6 2.8330 -6.3201 2.0346 25 6 1.8209 -2.0766 1.2519 26 1 -0.3633 0.0772 1.0248 27 1 -0.3633 0.8489 -0.5792 28 1 -0.3634 -0.9260 -0.4456 29 1 -0.0413 3.0794 1.4178 30 1 2.0692 -1.4912 -2.1385 31 1 0.7605 -2.2919 -1.2365 32 1 3.6858 -3.1646 -1.2530 33 1 2.3720 -3.9441 -2.1675 34 1 2.8817 -5.1001 0.0133 35 1 1.2033 -4.5084 -0.0885 36 1 5.7058 -5.1781 3.3173 37 1 4.1744 -5.1200 4.2553 38 1 4.7112 -7.4692 4.3852 39 1 5.3896 -7.4887 2.7302 40 1 1.8873 -5.9512 2.4317 41 1 2.6969 -6.6595 1.0077 42 1 0.7392 -2.2020 1.2973 43 1 2.1682 -1.5546 2.1435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027317822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:05 Heat of formation + Delta-G solvation = -54.806973 kcal Electronic energy + Delta-G solvation = -23440.640864 eV Core-core repulsion = 20100.597046 eV Total energy + Delta-G solvation = -3340.043818 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.60562 -38.84684 -37.34023 -35.14621 -32.75155 -32.14213 -31.27085 -29.83769 -28.47615 -26.02543 -25.45696 -23.67564 -23.04266 -22.16799 -21.60080 -19.46454 -18.69768 -17.44843 -16.81580 -16.60929 -16.25715 -15.27854 -15.13425 -14.80005 -14.51652 -14.16766 -13.79700 -13.62859 -13.50434 -13.32591 -12.80291 -12.62787 -12.46256 -12.10413 -11.89799 -11.66656 -11.50282 -11.22395 -11.11863 -11.02473 -10.83071 -10.64778 -10.42520 -10.35768 -10.18355 -9.91682 -9.79793 -9.75801 -9.53651 -8.60628 -8.35562 -6.77783 -5.73423 -3.19326 2.70798 3.09886 3.38142 3.45139 3.47210 3.63053 4.11673 4.45937 4.49233 4.64694 4.78825 4.92391 4.96107 5.01212 5.09987 5.25461 5.35857 5.43471 5.46915 5.49715 5.53188 5.57812 5.69092 5.73208 5.86956 5.96020 5.97983 6.09002 6.20238 6.34552 6.46923 6.64206 6.68299 6.75497 6.90160 6.95515 7.37470 7.61085 7.71099 7.80790 8.31634 8.39199 9.22353 9.84892 10.33070 11.31427 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.004129 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.111818 B = 6780.492623 C = 7216.797220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.103 3.897 16 N -0.604 5.604 17 C 0.520 3.480 18 O -0.536 6.536 19 C -0.147 4.147 20 H 0.109 0.891 21 C -0.136 4.136 22 C 0.050 3.950 23 O -0.382 6.382 24 C 0.064 3.936 25 C 0.098 3.902 26 H 0.028 0.972 27 H 0.044 0.956 28 H -0.001 1.001 29 H 0.252 0.748 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 -18.392 -2.171 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.385 4.385 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.020 4.020 16 N -0.338 5.338 17 C 0.306 3.694 18 O -0.412 6.412 19 C -0.168 4.168 20 H 0.127 0.873 21 C -0.174 4.174 22 C -0.026 4.026 23 O -0.302 6.302 24 C -0.013 4.013 25 C -0.026 4.026 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.017 0.983 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.366 -18.020 -1.546 18.865 hybrid contribution 0.397 1.216 -0.273 1.309 sum 5.763 -16.804 -1.820 17.857 Atomic orbital electron populations 1.20794 0.82526 0.95631 0.99318 1.43959 1.01896 1.00036 1.85480 1.19270 0.97875 0.85129 1.36273 0.91325 1.25024 0.97751 0.98539 0.98203 1.70079 1.18336 1.26992 1.39691 0.86173 0.78583 0.84220 0.77497 1.20333 1.21614 1.21676 1.20710 0.96426 0.86188 0.90697 0.91761 1.22093 0.99676 0.94940 1.00623 1.21910 1.01054 0.97331 0.96700 1.21870 1.01448 0.93646 0.85055 1.48301 1.48768 1.19345 1.17356 1.20128 0.78990 0.87326 0.82920 1.90718 1.61383 1.58108 1.31020 1.22910 0.98580 0.93916 1.01436 0.87273 1.23214 1.01590 0.95090 0.97507 1.23477 0.85275 0.94489 0.99363 1.88406 1.33905 1.40436 1.67421 1.23192 0.96649 0.85654 0.95785 1.22666 0.96627 0.80843 1.02453 0.95332 0.93680 0.98260 0.93752 0.91652 0.92201 0.91744 0.91161 0.90289 0.91273 0.89325 0.88819 0.89416 0.92009 0.90752 0.90439 0.91990 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 7.91 59.85 0.47 4.38 16 2 N -0.59 -14.61 2.82 -173.08 -0.49 -15.10 16 3 C -0.26 -7.03 9.60 -15.06 -0.14 -7.18 16 4 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 5 C 0.00 0.09 5.11 -17.43 -0.09 0.00 16 6 N -0.91 -26.48 10.63 55.49 0.59 -25.89 16 7 Si 0.91 22.00 29.57 -169.99 -5.03 16.97 16 8 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 11 C 0.17 3.40 2.75 -67.58 -0.19 3.21 16 12 H 0.06 1.37 7.86 -51.93 -0.41 0.96 16 13 C -0.13 -2.13 5.13 -26.69 -0.14 -2.27 16 14 C -0.13 -1.55 6.08 -26.61 -0.16 -1.71 16 15 C 0.10 1.14 5.74 -3.71 -0.02 1.12 16 16 N -0.60 -9.16 2.97 -172.51 -0.51 -9.67 16 17 C 0.52 8.10 6.94 -10.99 -0.08 8.03 16 18 O -0.54 -10.69 15.14 5.55 0.08 -10.61 16 19 C -0.15 -1.63 2.39 -89.82 -0.21 -1.84 16 20 H 0.11 0.99 7.68 -51.93 -0.40 0.59 16 21 C -0.14 -1.44 6.28 -24.34 -0.15 -1.59 16 22 C 0.05 0.45 7.78 38.33 0.30 0.75 16 23 O -0.38 -4.38 11.36 -35.23 -0.40 -4.78 16 24 C 0.06 0.66 6.25 37.88 0.24 0.90 16 25 C 0.10 1.87 5.81 -3.49 -0.02 1.85 16 26 H 0.03 0.75 7.41 -51.93 -0.39 0.37 16 27 H 0.04 1.18 7.20 -51.93 -0.37 0.80 16 28 H 0.00 -0.02 6.46 -51.93 -0.34 -0.36 16 29 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.96 6.72 -51.93 -0.35 0.61 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.67 4.48 -51.93 -0.23 0.43 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.18 7.42 -51.93 -0.39 0.80 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.84 7.81 -51.93 -0.41 0.44 16 41 H 0.08 0.63 6.89 -51.93 -0.36 0.27 16 42 H 0.06 1.19 7.53 -51.93 -0.39 0.80 16 43 H 0.09 2.09 7.00 -51.93 -0.36 1.73 16 LS Contribution 329.17 15.07 4.96 4.96 Total: -1.00 -32.17 329.17 -7.88 -40.05 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.89 Total: -1.59 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -0.19 Total: 5.64 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.41 Total: -50.65 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.32 Total: -15.39 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.17 -7.88 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027317822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.755 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds