Wall clock time and date at job start Tue Mar 31 2020 05:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36929 * 120.00346 * 2 1 4 4 H 1.08005 * 120.00141 * 202.06413 * 3 2 1 5 5 C 1.38816 * 120.00080 * 22.05951 * 3 2 1 6 6 N 1.31617 * 119.99862 * 12.43302 * 5 3 2 7 7 Si 1.86801 * 120.00002 * 192.42726 * 5 3 2 8 8 H 1.48500 * 109.47239 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.46842 * 120.00495 * 7 5 3 10 10 H 1.48502 * 109.47069 * 239.99907 * 7 5 3 11 11 C 1.46501 * 119.99623 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.49656 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.49518 * 60.00166 * 11 2 1 14 14 C 1.53039 * 109.53630 * 178.65149 * 13 11 2 15 15 C 1.53199 * 109.31539 * 61.36150 * 14 13 11 16 16 N 1.46916 * 108.77396 * 305.36853 * 15 14 13 17 17 C 1.34777 * 120.62979 * 233.58470 * 16 15 14 18 18 O 1.21287 * 120.00319 * 179.97438 * 17 16 15 19 19 C 1.50699 * 119.99834 * 0.27227 * 17 16 15 20 20 H 1.09001 * 110.75409 * 59.02718 * 19 17 16 21 21 C 1.55307 * 110.84767 * 182.49913 * 19 17 16 22 22 C 1.55211 * 100.82804 * 152.18157 * 21 19 17 23 23 O 1.43647 * 105.25629 * 323.81625 * 22 21 19 24 24 C 1.43232 * 109.97320 * 24.28476 * 23 22 21 25 25 C 1.46924 * 118.74199 * 53.85842 * 16 15 14 26 26 H 1.08998 * 109.46727 * 274.30605 * 1 2 3 27 27 H 1.08998 * 109.46693 * 34.30320 * 1 2 3 28 28 H 1.08997 * 109.47411 * 154.30448 * 1 2 3 29 29 H 0.97000 * 120.00125 * 179.97438 * 6 5 3 30 30 H 1.08992 * 109.46306 * 58.63144 * 13 11 2 31 31 H 1.09005 * 109.46145 * 298.66545 * 13 11 2 32 32 H 1.09001 * 109.50136 * 301.41043 * 14 13 11 33 33 H 1.09000 * 109.50157 * 181.31685 * 14 13 11 34 34 H 1.09003 * 109.58445 * 185.57542 * 15 14 13 35 35 H 1.08999 * 109.57914 * 65.15355 * 15 14 13 36 36 H 1.09002 * 111.12367 * 270.24297 * 21 19 17 37 37 H 1.08999 * 111.12909 * 34.40182 * 21 19 17 38 38 H 1.08997 * 110.36975 * 204.79717 * 22 21 19 39 39 H 1.09001 * 110.20991 * 82.74832 * 22 21 19 40 40 H 1.09000 * 109.83460 * 238.77685 * 24 23 22 41 41 H 1.09005 * 109.83276 * 117.80109 * 24 23 22 42 42 H 1.08994 * 109.58631 * 65.92468 * 25 16 15 43 43 H 1.09000 * 109.58671 * 186.35483 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1705 1.2200 -0.3514 5 6 1.5320 2.3440 0.4515 6 7 0.3902 2.2701 1.1020 7 14 2.3213 4.0074 0.1360 8 1 3.5911 3.8192 -0.6106 9 1 1.3970 4.8499 -0.6648 10 1 2.6027 4.6756 1.4319 11 6 2.1975 -1.2688 0.0006 12 1 3.2692 -1.0702 0.0009 13 6 1.8281 -2.0723 -1.2485 14 6 2.6180 -3.3830 -1.2659 15 6 2.2508 -4.2124 -0.0313 16 7 2.4665 -3.3938 1.1694 17 6 3.2374 -3.8450 2.1787 18 8 3.4082 -3.1595 3.1646 19 6 3.8927 -5.1984 2.0793 20 1 4.5468 -5.2478 1.2087 21 6 4.6760 -5.5300 3.3787 22 6 4.6087 -7.0806 3.3720 23 8 3.3116 -7.4004 2.8441 24 6 2.8330 -6.3201 2.0346 25 6 1.8209 -2.0766 1.2519 26 1 -0.3633 0.0772 1.0248 27 1 -0.3633 0.8489 -0.5792 28 1 -0.3634 -0.9260 -0.4456 29 1 -0.0413 3.0794 1.4178 30 1 2.0692 -1.4912 -2.1385 31 1 0.7605 -2.2919 -1.2365 32 1 3.6858 -3.1646 -1.2530 33 1 2.3720 -3.9441 -2.1675 34 1 2.8817 -5.1001 0.0133 35 1 1.2033 -4.5084 -0.0885 36 1 5.7058 -5.1781 3.3173 37 1 4.1744 -5.1200 4.2553 38 1 4.7112 -7.4692 4.3852 39 1 5.3896 -7.4887 2.7302 40 1 1.8873 -5.9512 2.4317 41 1 2.6969 -6.6595 1.0077 42 1 0.7392 -2.2020 1.2973 43 1 2.1682 -1.5546 2.1435 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027317822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:04 Heat of formation + Delta-G solvation = -76.737923 kcal Electronic energy + Delta-G solvation = -23441.591862 eV Core-core repulsion = 20100.597046 eV Total energy + Delta-G solvation = -3340.994816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.71810 -39.88789 -38.73801 -36.82446 -34.17811 -33.23199 -32.82945 -30.96553 -29.80666 -28.07772 -26.66855 -25.34250 -23.96553 -23.09075 -22.99114 -20.87246 -19.94958 -18.83586 -18.41577 -17.61423 -17.36563 -16.94895 -16.31263 -16.03872 -15.66303 -15.54513 -15.24984 -15.12981 -14.63811 -14.43389 -14.30483 -14.03146 -13.82258 -13.57132 -13.14484 -12.90252 -12.83999 -12.52929 -12.48057 -12.33585 -12.22848 -12.11369 -12.07295 -11.94387 -11.74062 -11.63920 -11.40330 -10.92229 -10.67810 -10.47857 -9.72894 -8.79428 -7.86346 -5.34560 1.42760 1.43943 1.50835 1.54598 1.90180 2.48337 2.84994 3.22230 3.27543 3.53764 3.61684 3.86359 3.94120 4.02902 4.07987 4.13367 4.17631 4.25859 4.29961 4.36497 4.56133 4.66432 4.72230 4.75887 4.77952 4.84472 4.88203 4.93061 4.93517 5.04331 5.13419 5.16982 5.25411 5.41541 5.47482 5.55545 5.60540 5.69844 5.94495 6.29433 6.41406 7.09493 7.12545 7.83800 8.25951 9.16636 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028273 B = 0.004129 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.111818 B = 6780.492623 C = 7216.797220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.265 4.265 4 H 0.068 0.932 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.969 3.031 8 H -0.266 1.266 9 H -0.287 1.287 10 H -0.295 1.295 11 C 0.167 3.833 12 H 0.045 0.955 13 C -0.124 4.124 14 C -0.122 4.122 15 C 0.097 3.903 16 N -0.603 5.603 17 C 0.512 3.488 18 O -0.592 6.592 19 C -0.137 4.137 20 H 0.144 0.856 21 C -0.140 4.140 22 C 0.054 3.946 23 O -0.400 6.400 24 C 0.067 3.933 25 C 0.113 3.887 26 H -0.003 1.003 27 H 0.018 0.982 28 H 0.036 0.964 29 H 0.248 0.752 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.113 0.887 42 H 0.058 0.942 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.765 -21.320 -4.399 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.332 5.332 3 C -0.396 4.396 4 H 0.085 0.915 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.797 3.203 8 H -0.191 1.191 9 H -0.213 1.213 10 H -0.222 1.222 11 C 0.059 3.941 12 H 0.063 0.937 13 C -0.163 4.163 14 C -0.161 4.161 15 C -0.024 4.024 16 N -0.335 5.335 17 C 0.301 3.699 18 O -0.472 6.472 19 C -0.158 4.158 20 H 0.162 0.838 21 C -0.178 4.178 22 C -0.022 4.022 23 O -0.320 6.320 24 C -0.010 4.010 25 C -0.012 4.012 26 H 0.015 0.985 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.131 0.869 42 H 0.077 0.923 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.632 -21.014 -3.817 22.364 hybrid contribution 0.039 2.071 0.456 2.121 sum 6.672 -18.943 -3.361 20.363 Atomic orbital electron populations 1.20485 0.82522 0.96232 0.97200 1.44191 1.02217 1.01074 1.85752 1.19585 0.97964 0.86598 1.35422 0.91453 1.25793 0.98517 1.01887 0.98533 1.70247 1.19746 1.27403 1.41081 0.85178 0.78139 0.79966 0.77015 1.19050 1.21340 1.22186 1.20880 0.94832 0.85177 0.93176 0.93703 1.21934 1.00632 0.96462 0.97267 1.21899 1.00274 0.95189 0.98707 1.22268 1.03575 0.93992 0.82553 1.48339 1.48100 1.18032 1.19011 1.21030 0.78279 0.88660 0.81889 1.90698 1.63220 1.60083 1.33247 1.22955 0.99010 0.90821 1.03012 0.83809 1.23224 1.01842 0.96569 0.96173 1.23603 0.85076 0.92895 1.00600 1.88388 1.35079 1.40685 1.67858 1.23256 0.95352 0.85039 0.97346 1.22072 0.96368 0.82962 0.99780 0.98506 0.96347 0.94535 0.94263 0.92479 0.91818 0.91681 0.87119 0.86360 0.89552 0.88129 0.91918 0.88616 0.89264 0.92482 0.86941 0.92345 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.96 7.91 127.77 1.01 9.97 16 2 N -0.61 -30.94 2.82 -701.51 -1.98 -32.91 16 3 C -0.27 -15.00 9.60 84.04 0.81 -14.20 16 4 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 5 C -0.05 -3.01 5.11 84.86 0.43 -2.57 16 6 N -0.94 -57.01 10.63 21.65 0.23 -56.78 16 7 Si 0.97 46.29 29.57 68.60 2.03 48.31 16 8 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 9 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 10 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 11 C 0.17 6.77 2.75 45.22 0.12 6.90 16 12 H 0.04 1.96 7.86 -2.39 -0.02 1.94 16 13 C -0.12 -3.68 5.13 30.62 0.16 -3.52 16 14 C -0.12 -2.34 6.08 30.67 0.19 -2.16 16 15 C 0.10 1.74 5.74 86.37 0.50 2.23 16 16 N -0.60 -17.55 2.97 -818.08 -2.43 -19.98 16 17 C 0.51 15.72 6.94 87.66 0.61 16.33 16 18 O -0.59 -24.78 15.14 -3.05 -0.05 -24.83 16 19 C -0.14 -2.65 2.39 -10.28 -0.02 -2.67 16 20 H 0.14 1.85 7.68 -2.39 -0.02 1.83 16 21 C -0.14 -2.74 6.28 32.15 0.20 -2.54 16 22 C 0.05 0.81 7.78 72.74 0.57 1.38 16 23 O -0.40 -7.91 11.36 -148.98 -1.69 -9.61 16 24 C 0.07 1.14 6.25 72.45 0.45 1.59 16 25 C 0.11 4.46 5.81 86.51 0.50 4.97 16 26 H 0.00 -0.19 7.41 -2.39 -0.02 -0.21 16 27 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 28 H 0.04 1.50 6.46 -2.39 -0.02 1.48 16 29 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.06 1.85 6.72 -2.38 -0.02 1.84 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 34 H 0.12 1.26 4.48 -2.39 -0.01 1.25 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.62 7.42 -2.39 -0.02 1.61 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 1.18 7.81 -2.39 -0.02 1.16 16 41 H 0.11 1.15 6.89 -2.38 -0.02 1.14 16 42 H 0.06 2.31 7.53 -2.39 -0.02 2.29 16 43 H 0.04 2.06 7.00 -2.39 -0.02 2.04 16 Total: -1.00 -75.89 329.17 2.63 -73.26 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.99 Total: 6.83 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 5.52 Total: 15.70 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -4.17 Total: -109.67 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -1.74 Total: -34.43 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -75.89 2.63 -73.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027317822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.479 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds